Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  162  of  214  ( 25680 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48007675--48007781
46
2.3
46
96
0
196
32
7
29
29
1.85
48007751--48007811
30
2.0
30
100
0
122
39
9
26
24
1.86
48007706--48007857
76
2.0
76
97
0
286
35
9
28
26
1.87
48007782--48007890
46
2.4
46
95
0
191
36
10
25
27
1.88
48010186--48010219
17
2.1
17
88
5
52
26
5
20
47
1.73
48012734--48012818
27
3.2
26
76
14
84
70
2
1
25
1.06
48012735--48012820
9
9.9
8
71
21
50
69
2
1
26
1.07
48012732--48012813
17
4.5
18
75
16
62
67
2
1
29
1.11
48013212--48013317
48
2.2
48
86
0
140
21
9
39
29
1.85
48020097--48020126
12
2.5
12
94
0
51
80
6
3
10
1.01
48020539--48020563
6
4.2
6
100
0
50
0
68
16
16
1.22
48020563--48020589
6
4.5
6
100
0
54
33
48
0
18
1.49
48022972--48023434
126
3.7
125
82
2
552
31
16
22
30
1.95
48022972--48023434
252
1.8
252
86
2
680
31
16
22
30
1.95
48028792--48028909
59
2.0
59
100
0
236
23
25
23
27
2.00
48032738--48032775
19
2.0
19
100
0
76
47
0
0
52
1.00
48033250--48033291
21
2.0
21
90
0
66
45
0
14
40
1.45
48038988--48039100
25
4.6
25
77
7
97
32
19
28
19
1.96
48042042--48042088
22
2.2
22
85
14
64
55
2
0
42
1.12
48049774--48049848
34
2.2
34
97
0
141
28
20
14
37
1.92
48055608--48055651
23
1.9
23
90
9
72
45
13
15
25
1.83
48064644--48064693
21
2.3
22
80
16
59
30
0
2
68
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48064819--48064857
17
2.2
18
86
13
55
12
7
10
69
1.37
48068333--48068367
17
2.1
17
89
10
54
82
2
0
14
0.77
48074675--48074744
6
10.5
6
75
18
50
38
0
2
58
1.13
48074674--48074724
15
3.6
15
76
10
54
37
0
3
58
1.16
48075861--48075962
17
5.7
17
69
17
64
61
0
2
34
1.17
48075864--48075934
20
3.8
20
75
7
60
60
1
2
35
1.20
48075864--48076057
9
21.3
9
68
21
86
61
1
1
35
1.14
48075916--48075976
26
2.3
26
80
0
68
62
1
1
34
1.15
48075971--48076051
19
4.4
19
75
10
71
61
1
0
37
1.04
48075991--48076057
17
3.8
17
76
6
62
67
1
0
31
1.00
48076444--48076578
58
2.4
55
80
6
135
35
2
5
55
1.39
48076549--48076587
20
2.0
20
85
5
53
38
2
0
58
1.12
48081319--48081533
21
10.3
21
77
5
177
16
20
16
46
1.84
48081318--48081516
84
2.4
83
82
6
224
17
20
15
46
1.84
48081985--48082044
25
2.3
26
78
16
63
21
10
26
41
1.85
48083907--48083949
21
2.0
21
86
0
59
39
16
0
44
1.48
48094289--48094474
77
2.4
77
82
1
212
46
9
10
33
1.69
48094289--48094498
77
2.7
76
80
3
206
46
9
9
35
1.68
48106827--48106887
28
2.2
28
78
0
68
31
11
6
50
1.64
48113024--48113050
2
13.5
2
100
0
54
0
51
0
48
1.00
48118199--48118229
10
3.2
10
90
9
55
38
12
9
38
1.77
48125046--48125097
24
2.2
24
89
0
77
55
9
1
32
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48127016--48127067
24
2.2
24
89
0
77
55
9
1
32
1.43
48130048--48130088
21
2.0
21
90
0
64
73
9
7
9
1.26
48131374--48131427
20
2.7
20
82
5
65
53
5
0
40
1.24
48131378--48131444
19
3.5
20
76
15
70
52
5
0
41
1.26
48133817--48133854
18
2.1
18
100
0
76
15
15
18
50
1.79
48135279--48135316
2
19.5
2
94
5
69
0
50
0
50
1.00
48135835--48135891
16
3.6
16
78
0
60
21
17
49
12
1.79
48152745--48152866
23
5.3
23
83
0
172
31
25
20
22
1.98
48152745--48152866
46
2.7
46
93
2
201
31
25
20
22
1.98
48153084--48153122
18
2.2
17
86
13
53
46
20
0
33
1.51
48157601--48157635
15
2.4
15
90
4
54
48
0
8
42
1.33
48160509--48160561
26
2.1
25
85
3
70
35
22
18
22
1.95
48163235--48163276
22
1.9
22
85
0
57
35
21
16
26
1.94
48167728--48167765
18
2.1
18
85
9
51
36
0
0
63
0.95
48169072--48169123
16
3.0
16
81
13
59
42
0
32
25
1.55
48169372--48169432
30
2.0
31
90
3
97
36
0
44
19
1.51
48169481--48169517
9
4.1
9
89
0
56
29
8
13
48
1.71
48175331--48175413
41
2.0
41
100
0
166
22
4
16
55
1.60
48179544--48179590
7
6.7
7
88
7
60
29
4
0
65
1.11
48184256--48184302
21
2.2
22
92
3
78
21
38
19
21
1.94
48190881--48190918
18
2.1
18
85
9
51
15
15
7
60
1.57
48190906--48191036
12
10.2
12
70
11
55
28
14
8
48
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48190949--48191028
25
3.2
25
80
7
74
27
15
10
47
1.77
48192597--48192655
9
6.4
9
79
11
57
42
23
10
23
1.85
48193030--48193477
246
1.8
246
98
0
869
40
6
16
36
1.74
48195403--48195429
14
1.9
14
100
0
54
48
0
22
29
1.51
48197384--48197418
18
1.9
18
88
0
52
42
11
11
34
1.77
48201651--48202321
342
2.0
343
94
0
1182
30
8
21
40
1.83
48204082--48204125
23
1.9
23
86
9
63
50
13
6
29
1.68
48204106--48204225
49
2.5
48
73
16
111
53
12
7
26
1.65
48204200--48204233
14
2.4
14
90
0
50
64
5
5
23
1.38
48205197--48205327
33
4.0
33
88
0
190
19
23
16
40
1.91
48212372--48212421
27
1.9
26
88
8
75
60
4
2
34
1.27
48216775--48216801
14
1.9
14
100
0
54
7
25
0
66
1.17
48226480--48226632
46
3.6
45
78
18
175
34
15
22
28
1.94
48226516--48226585
36
1.9
36
100
0
140
37
17
18
27
1.93
48227965--48227990
13
2.0
13
100
0
52
23
7
0
69
1.14
48227966--48228019
16
3.6
15
79
18
51
31
5
0
62
1.18
48229460--48229662
41
5.0
41
85
5
250
33
27
18
20
1.96
48230312--48230346
17
2.1
17
89
5
54
31
14
5
48
1.67
48251184--48251240
25
2.3
25
84
0
69
40
12
5
42
1.65
48251478--48251559
23
3.4
23
85
8
94
29
19
26
24
1.98
48251478--48251569
23
3.9
23
78
15
89
29
19
27
23
1.98
48257427--48257545
53
2.3
49
83
8
114
21
10
4
63
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48257376--48257545
54
3.3
49
77
14
132
22
11
3
62
1.43
48257904--48257948
20
2.2
20
88
0
63
42
2
6
48
1.41
48257901--48257940
20
2.0
20
95
0
71
42
0
7
50
1.30
48258927--48258967
10
4.1
10
77
22
50
31
17
0
51
1.46
48261642--48261698
24
2.4
24
82
5
62
35
0
8
56
1.31
48274251--48274288
8
4.6
8
93
3
58
65
0
7
26
1.19
48274250--48274294
16
2.6
17
82
10
65
62
0
8
28
1.25
48275119--48275176
22
2.6
22
84
7
73
43
17
3
36
1.66
48276781--48276823
18
2.3
19
84
15
54
41
0
4
53
1.21
48280407--48280436
13
2.3
13
94
0
51
80
6
3
10
1.01
48291101--48291342
126
1.9
125
94
0
421
29
15
22
32
1.95
48292818--48292854
7
5.4
7
84
15
51
67
0
0
32
0.91
48295075--48295101
4
6.8
4
100
0
54
25
0
22
51
1.48
48295006--48295095
47
1.9
46
84
6
119
48
1
12
37
1.48
48295127--48295197
8
9.1
8
76
11
58
53
1
8
36
1.40
48295134--48295210
10
7.2
11
75
12
63
57
1
5
36
1.30
48295147--48295208
22
2.9
22
92
4
101
59
0
6
33
1.23
48295120--48295210
30
2.9
31
81
12
96
56
1
7
35
1.35
48296893--48297467
46
12.5
46
87
2
757
28
26
16
27
1.97
48298559--48298672
43
2.6
44
80
6
126
25
28
14
30
1.95
48300575--48300611
17
2.1
18
90
5
58
45
0
24
29
1.53
48304685--48304715
4
7.8
4
92
0
53
25
0
19
54
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48304685--48304715
16
1.9
16
100
0
62
25
0
19
54
1.44
48304759--48304798
22
1.9
20
90
10
62
62
0
5
32
1.17
48307928--48307984
11
4.8
11
75
23
53
64
1
1
31
1.13
48307956--48307989
14
2.4
14
100
0
68
61
0
0
38
0.96
48308859--48308899
20
2.1
20
86
4
57
60
2
2
34
1.23
48309210--48309289
30
2.6
30
79
13
83
37
6
0
56
1.25
48312480--48312539
29
2.0
29
81
9
68
23
16
20
40
1.91
48313721--48313776
29
1.9
29
85
0
76
28
14
19
37
1.91
48313718--48313781
29
2.2
28
78
5
74
28
15
17
39
1.90
48317581--48317625
23
2.0
23
95
0
81
31
2
17
48
1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214