genome.fa.s25.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  197  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57624410--57624741	126	2.6	126	87	2	461	37	17	15	28	1.91
57626448--57626500	10	5.3	10	80	14	65	32	1	0	66	1.03
57626438--57626514	29	2.6	31	86	13	101	38	2	0	58	1.12
57626448--57626531	40	2.1	40	91	4	134	34	2	1	61	1.16
57626442--57626514	9	7.3	10	72	16	62	39	2	0	57	1.13
57626438--57626517	11	7.8	11	72	19	59	40	2	0	57	1.12
57628276--57628472	95	2.1	95	91	3	319	54	7	3	35	1.45
57629725--57629783	30	2.0	30	86	0	82	40	5	25	28	1.77
57630232--57630284	23	2.3	23	93	0	97	20	20	26	32	1.98
57630414--57630486	38	1.9	37	86	8	103	45	1	21	31	1.61
57635082--57635127	19	2.3	21	92	7	78	73	2	4	19	1.10
57638514--57638580	21	3.4	19	77	16	64	32	19	44	2	1.66
57638793--57638831	15	2.7	15	88	4	53	7	5	28	58	1.47
57638942--57638974	16	2.1	16	100	0	66	45	30	18	6	1.73
57639696--57639747	25	2.1	25	86	10	72	71	1	0	26	0.97
57640976--57641038	30	2.1	30	96	0	117	57	15	3	23	1.53
57645771--57645973	97	2.1	99	85	3	277	44	4	2	48	1.36
57645771--57645998	97	2.4	97	83	5	257	42	4	3	49	1.41
57651662--57651846	46	4.0	46	91	0	307	29	27	8	34	1.87
57655810--57656112	157	1.9	157	94	1	536	27	15	24	33	1.95
57658864--57658889	6	4.3	6	100	0	52	15	19	15	50	1.79
57668177--57668241	34	1.9	34	84	6	87	40	0	3	56	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57674837--57674930	48	2.0	48	97	0	179	44	4	4	46	1.42
57675181--57675213	16	2.1	16	100	0	66	36	6	36	21	1.78
57675565--57675599	18	2.0	17	88	5	52	54	0	0	45	0.99
57675425--57675744	120	2.7	120	98	0	615	50	5	0	43	1.31
57675685--57675719	18	2.0	17	88	5	52	54	0	0	45	0.99
57675718--57675760	16	2.8	16	92	3	70	41	16	0	41	1.48
57678193--57678218	5	5.2	5	100	0	52	0	0	80	19	0.71
57683092--57683132	21	2.0	21	85	0	55	31	21	26	19	1.97
57692304--57692332	14	2.0	15	93	6	51	48	20	3	27	1.66
57692546--57692656	41	2.8	40	78	9	120	34	23	18	23	1.96
57699566--57699619	23	2.4	23	87	6	76	59	7	1	31	1.36
57699569--57699639	3	23.3	3	74	8	63	61	5	1	30	1.27
57700106--57700143	11	3.2	12	88	11	60	47	0	52	0	1.00
57700623--57700647	8	3.1	8	100	0	50	24	12	52	12	1.72
57705375--57705534	25	6.6	25	77	11	131	38	18	23	19	1.93
57705386--57705522	50	2.8	46	80	10	148	37	18	24	19	1.93
57705375--57705534	72	2.2	71	81	10	175	38	18	23	19	1.93
57708168--57708198	12	2.6	12	94	0	53	87	0	12	0	0.55
57711518--57711629	42	2.7	42	82	8	122	23	17	26	32	1.97
57711926--57711970	17	2.6	18	76	16	51	44	0	20	35	1.51
57717115--57717305	36	5.0	36	83	13	240	28	19	13	37	1.90
57717026--57717341	82	3.9	81	82	14	350	28	21	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57717069--57717305	118	2.0	118	94	1	413	29	20	13	36	1.91
57720805--57720853	9	5.6	9	92	4	73	40	24	10	24	1.86
57720805--57720853	17	2.8	18	87	6	73	40	24	10	24	1.86
57737919--57738092	86	2.0	86	94	0	303	43	17	11	27	1.83
57743668--57743712	20	2.3	19	84	7	54	53	2	0	44	1.13
57746403--57746503	12	9.6	11	69	19	56	57	0	3	37	1.24
57746380--57746481	39	2.5	39	88	7	141	61	0	1	35	1.14
57746444--57746513	32	2.2	32	89	0	104	60	1	5	32	1.29
57746495--57746534	18	2.2	18	86	0	53	60	0	2	37	1.11
57759586--57759612	13	2.1	13	100	0	54	22	22	22	33	1.97
57764135--57764254	61	2.0	61	93	0	204	15	2	35	46	1.60
57771649--57771702	26	2.1	26	100	0	108	27	3	12	55	1.54
57772307--57772393	42	2.1	42	100	0	174	41	4	14	39	1.67
57777753--57777942	100	1.9	104	86	7	282	56	3	7	33	1.43
57794257--57794566	157	2.0	157	93	0	530	47	4	3	44	1.41
57794696--57794763	16	4.2	16	94	0	118	38	33	0	27	1.57
57797969--57797993	2	12.5	2	100	0	50	52	0	0	48	1.00
57800565--57800607	11	3.8	11	80	17	52	30	2	2	65	1.18
57800568--57800611	23	1.9	23	90	0	70	31	2	4	61	1.28
57803042--57803072	9	3.4	9	90	0	53	25	12	22	38	1.90
57803126--57803162	9	4.1	9	100	0	74	45	10	10	32	1.74
57804629--57804726	26	3.6	25	71	21	65	65	2	3	29	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57804680--57804763	31	2.9	29	75	10	82	63	0	1	35	1.03
57806626--57806654	5	5.8	5	100	0	58	41	0	0	58	0.98
57808732--57808772	12	3.5	11	87	12	55	68	0	2	29	1.03
57813562--57814097	180	3.0	180	98	0	1009	32	17	14	35	1.90
57820757--57820812	22	2.5	23	80	11	62	37	0	7	55	1.27
57821766--57821815	25	2.0	26	88	11	77	50	4	2	44	1.32
57823061--57823090	15	1.9	15	93	6	51	66	0	0	33	0.92
57826521--57826562	20	2.0	21	86	4	59	52	11	0	35	1.38
57826485--57826565	18	4.3	18	70	20	58	46	14	1	37	1.53
57826488--57826570	20	4.3	20	67	14	57	44	15	1	38	1.55
57827387--57827439	21	2.5	21	87	0	70	32	5	30	32	1.81
57827928--57827960	16	2.1	16	100	0	66	30	12	36	21	1.90
57834460--57834500	19	2.0	20	86	9	57	46	4	2	46	1.37
57834473--57834511	19	2.0	19	85	5	51	46	5	0	48	1.24
57842150--57842191	20	2.1	20	86	0	57	47	0	7	45	1.30
57844329--57844353	8	3.1	8	100	0	50	28	12	36	24	1.91
57844586--57844714	43	3.0	43	73	20	117	25	19	25	29	1.98
57850677--57850787	21	5.3	20	74	6	87	41	20	24	13	1.88
57850672--57850875	42	4.9	41	83	5	212	42	18	24	15	1.88
57850693--57850832	21	6.7	21	73	0	109	40	18	26	14	1.89
57850693--57850875	84	2.2	84	86	2	242	41	18	25	15	1.89
57850975--57851022	24	2.0	24	91	0	78	20	29	10	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57851079--57851163	44	1.9	45	82	2	109	47	12	1	38	1.50
57852913--57852955	10	4.2	10	77	16	52	65	0	0	34	0.93
57854209--57854239	16	1.9	16	93	0	53	22	0	3	74	0.96
57867970--57868011	20	2.1	20	86	0	57	47	0	7	45	1.30
57870050--57870074	8	3.1	8	100	0	50	28	12	36	24	1.91
57876345--57876455	21	5.3	20	74	6	87	41	20	24	13	1.88
57876340--57876543	42	4.9	41	83	5	212	42	18	24	15	1.88
57876361--57876500	21	6.7	21	73	0	109	40	18	26	14	1.89
57876361--57876543	84	2.2	84	86	2	242	41	18	25	15	1.89
57876643--57876690	24	2.0	24	91	0	78	20	29	10	39	1.86
57876748--57876834	45	1.9	46	83	2	113	45	12	1	40	1.50
57878602--57878648	11	4.1	11	78	10	58	65	2	0	31	1.04
57886255--57886299	23	2.0	23	86	4	65	44	4	15	35	1.67
57886267--57886309	22	1.9	23	85	4	61	39	4	13	41	1.66
57886267--57886312	23	2.1	23	84	8	60	39	4	15	41	1.67
57886719--57886755	3	12.3	3	88	11	58	35	0	0	64	0.94
57889719--57889957	101	2.4	101	87	0	327	29	23	15	32	1.95
57891826--57891884	29	2.0	29	86	0	82	55	5	1	37	1.32
57892874--57892913	12	3.1	14	75	17	50	42	0	0	57	0.98
57892865--57892912	25	1.9	25	83	8	62	47	0	0	52	1.00
57895540--57895614	30	2.5	31	80	6	84	42	8	2	46	1.47
57902436--57902481	3	15.3	3	100	0	92	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57902954--57902984	2	15.5	2	100	0	62	0	48	0	51	1.00
57906964--57907029	33	2.0	32	82	8	80	51	6	0	42	1.26
57908373--57908399	14	1.9	14	100	0	54	7	7	14	70	1.32
57912579--57912650	33	2.2	33	79	18	80	31	2	4	61	1.29
57912702--57912751	14	3.6	14	79	12	50	28	4	20	48	1.67
57914447--57914814	188	2.0	188	82	2	461	41	12	14	31	1.83
57915590--57915645	17	3.2	17	82	2	76	73	0	0	26	0.84
57915590--57915645	9	6.4	9	79	8	71	73	0	0	26	0.84
57915577--57915635	26	2.3	26	100	0	118	66	0	0	33	0.92
57915590--57915644	8	6.5	8	81	10	65	72	0	0	27	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214