genome.fa.s25.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  184  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54039661--54039710	3	16.7	3	100	0	100	68	0	0	32	0.90
54045903--54045941	11	3.6	11	82	6	53	28	2	0	69	1.02
54046166--54046473	107	2.8	110	89	5	468	29	15	19	35	1.93
54048033--54048279	125	2.0	125	80	6	286	31	17	15	35	1.91
54051884--54052073	103	1.9	102	87	3	283	36	16	5	41	1.71
54052240--54052269	14	2.1	15	93	6	53	33	0	6	60	1.23
54053299--54053344	15	3.1	15	74	20	51	43	0	4	52	1.21
54053923--54053983	27	2.2	28	80	11	65	73	1	0	24	0.92
54058447--54058489	18	2.4	18	80	0	59	44	0	4	51	1.22
54058922--54059019	51	1.9	51	81	8	119	24	29	2	43	1.65
54060598--54060665	30	2.3	30	79	5	75	29	41	16	13	1.86
54060749--54060791	18	2.4	18	88	0	59	18	27	9	44	1.80
54064332--54064617	124	2.3	124	94	0	491	30	22	17	30	1.96
54071031--54071170	68	2.1	68	100	0	280	36	13	8	41	1.75
54073615--54073647	16	2.0	17	88	5	50	51	0	0	48	1.00
54078335--54078482	57	2.5	59	85	9	194	30	20	25	22	1.99
54078604--54078729	66	1.9	66	98	0	243	18	17	37	26	1.93
54084708--54084740	6	5.7	6	92	3	50	57	0	33	9	1.30
54093930--54094006	38	2.0	38	100	0	154	23	23	7	45	1.78
54095215--54095280	31	2.1	31	83	5	80	42	12	3	42	1.57
54095578--54095650	27	2.7	28	87	8	107	21	26	31	20	1.98
54095841--54095865	12	2.1	12	100	0	50	24	36	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54097578--54097612	3	12.3	3	88	11	56	0	34	0	65	0.93
54097582--54097613	8	4.2	8	84	15	50	0	37	0	62	0.95
54097579--54097634	11	5.3	11	79	16	57	0	35	0	64	0.94
54097578--54097634	14	4.1	14	84	11	73	0	35	0	64	0.93
54097578--54097629	17	3.1	17	81	13	56	0	34	0	65	0.93
54098886--54098910	5	5.0	5	100	0	50	60	0	0	40	0.97
54102476--54102500	10	2.5	10	100	0	50	20	8	28	44	1.79
54102749--54102789	20	2.2	19	91	8	66	31	0	19	48	1.49
54106879--54107050	91	1.9	90	89	9	269	43	1	5	50	1.32
54107061--54107094	17	2.0	17	100	0	68	41	0	0	58	0.98
54107061--54107108	15	3.0	15	81	9	51	41	2	0	56	1.11
54107251--54107342	44	2.2	43	81	14	111	39	27	4	29	1.76
54107259--54107348	46	2.0	46	91	4	148	40	27	4	27	1.76
54107328--54107364	16	2.3	16	100	0	74	21	35	5	37	1.77
54109137--54109183	21	2.2	21	96	0	85	27	23	25	23	2.00
54116226--54116305	25	3.4	25	63	16	62	33	26	6	33	1.81
54120734--54120779	24	1.9	24	82	8	58	45	4	47	2	1.34
54127737--54127788	22	2.3	23	83	9	63	42	1	3	51	1.31
54130205--54130266	19	3.3	18	80	8	70	20	1	8	69	1.23
54130213--54130286	18	3.9	19	76	15	64	24	1	5	68	1.18
54130203--54130285	37	2.2	39	84	6	107	26	1	6	66	1.22
54132053--54132087	7	5.0	7	100	0	70	14	42	0	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54135876--54135911	15	2.5	15	91	8	58	52	5	0	41	1.24
54136831--54136868	14	2.7	15	88	8	53	50	2	5	42	1.39
54136860--54136898	20	2.0	20	85	5	53	35	0	7	56	1.28
54137720--54137756	18	2.1	18	100	0	74	51	21	5	21	1.68
54142695--54142734	5	8.2	5	88	5	64	20	2	0	77	0.88
54142695--54142731	19	1.9	19	94	0	65	18	2	0	78	0.87
54143570--54143604	16	2.1	18	89	10	56	51	0	48	0	1.00
54143867--54143925	26	2.3	26	88	5	84	22	44	28	5	1.74
54143886--54143925	8	4.8	8	82	11	53	22	47	27	2	1.64
54144475--54144522	18	2.8	17	84	6	69	31	16	10	41	1.82
54144598--54144691	35	2.6	35	83	5	125	37	13	10	38	1.80
54144620--54144677	17	3.3	17	76	13	64	36	13	10	39	1.79
54144767--54144815	17	2.9	17	84	6	55	28	10	8	53	1.63
54144775--54144865	17	5.2	16	76	15	83	30	8	9	50	1.66
54144796--54144833	19	2.0	20	94	5	69	23	5	10	60	1.50
54144779--54144852	36	2.0	37	82	7	89	27	8	9	55	1.60
54144845--54144923	19	4.1	20	85	9	119	37	11	10	40	1.75
54144738--54144942	53	3.7	53	72	16	141	33	10	10	45	1.72
54144845--54144942	38	2.5	38	85	9	119	36	10	10	42	1.73
54146334--54146371	18	2.2	18	81	9	53	52	0	0	47	1.00
54147443--54147493	6	8.2	6	77	14	50	43	3	0	52	1.19
54147498--54147597	50	2.0	49	84	1	128	33	5	5	57	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54159591--54159641	18	2.9	18	74	14	52	29	31	0	39	1.57
54175221--54175273	27	1.9	28	88	3	81	32	1	0	66	1.03
54178690--54178751	29	2.1	30	84	6	81	32	8	16	43	1.77
54201863--54201904	19	2.2	20	82	4	50	54	11	0	33	1.37
54202000--54202027	14	2.0	14	100	0	56	14	21	21	42	1.88
54203276--54203334	18	3.3	18	68	13	59	10	8	11	69	1.37
54203263--54203337	35	2.1	35	100	0	150	12	8	14	65	1.47
54214238--54214276	18	2.1	19	90	4	62	51	0	0	48	1.00
54214470--54214532	10	6.4	10	74	15	51	28	3	3	65	1.24
54214469--54214611	9	15.8	9	65	23	61	33	3	2	60	1.28
54214375--54214618	124	2.0	124	86	6	350	34	4	3	57	1.35
54214458--54214525	20	3.4	20	81	4	84	29	5	2	61	1.34
54214460--54214612	19	8.4	19	65	25	64	32	5	2	60	1.33
54214370--54214611	43	5.7	42	68	19	121	35	4	2	57	1.32
54214553--54214626	34	2.2	33	81	11	80	28	6	4	60	1.40
54215065--54215099	18	1.9	18	94	0	61	42	2	0	54	1.15
54234966--54235005	19	2.2	18	86	4	53	62	12	2	22	1.42
54238253--54238305	23	2.3	23	83	6	72	41	7	0	50	1.30
54240188--54240225	20	1.9	20	88	0	58	28	5	13	52	1.61
54240173--54240239	34	1.9	35	87	3	100	32	5	13	47	1.67
54242767--54242818	25	2.1	25	92	7	88	38	9	26	25	1.86
54243704--54243771	11	6.5	11	75	23	51	36	1	0	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54243661--54243718	22	2.5	22	80	5	71	32	1	0	65	1.03
54243695--54243776	39	2.1	38	93	2	137	34	1	0	64	1.01
54249396--54249441	22	2.1	22	84	4	58	30	10	0	58	1.32
54255751--54255838	41	2.2	40	89	2	131	25	18	20	36	1.95
54256873--54256916	17	2.6	17	92	3	72	29	0	20	50	1.49
54257667--54257988	46	7.0	46	93	0	538	36	8	25	29	1.86
54260761--54260807	20	2.3	20	85	0	67	21	12	36	29	1.91
54265885--54265923	11	3.7	10	83	10	51	74	0	25	0	0.82
54265878--54265919	17	2.5	17	80	7	50	73	0	26	0	0.83
54266801--54266931	41	3.3	40	78	5	117	26	18	20	34	1.96
54276633--54276670	20	1.9	20	89	10	60	26	2	2	68	1.16
54278696--54278734	17	2.3	18	83	16	57	20	12	0	66	1.24
54278699--54278737	16	2.5	15	88	12	60	23	12	0	64	1.28
54283916--54284017	21	5.0	21	75	2	82	45	15	22	16	1.85
54285438--54285500	33	2.0	33	84	6	85	44	7	14	33	1.74
54287707--54287755	20	2.5	21	84	15	61	34	4	10	51	1.55
54289620--54289677	21	2.8	21	76	7	55	36	13	12	37	1.82
54296858--54296898	20	2.0	20	95	0	73	60	19	12	7	1.54
54300911--54301241	167	2.0	162	93	2	563	31	30	10	26	1.91
54302785--54302844	31	1.9	31	82	0	75	20	21	11	46	1.82
54308454--54308534	39	2.1	39	88	0	117	49	8	18	23	1.75
54314676--54314713	19	2.0	19	100	0	76	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54321711--54321758	15	3.1	15	82	5	60	72	12	0	14	1.11
54328201--54328234	17	2.0	17	88	0	50	23	23	14	38	1.92
54330063--54330106	20	2.3	19	84	4	52	50	2	9	38	1.47
54332078--54332107	13	2.3	13	100	0	60	46	6	13	33	1.69
54333668--54333702	18	2.0	18	94	5	63	42	0	0	57	0.99
54333675--54333720	18	2.8	17	83	9	51	45	0	0	54	0.99
54333687--54333743	26	2.2	25	81	3	69	40	0	3	56	1.17
54333591--54333897	120	2.6	119	94	2	526	41	1	4	52	1.33
54333788--54333952	22	8.0	21	67	20	82	41	1	2	54	1.21
54333790--54333824	17	2.1	17	100	0	70	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214