genome.fa.s25.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  160  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47605051--47605138	28	3.1	28	82	6	88	30	25	22	21	1.99
47605276--47605325	26	1.9	26	95	0	91	44	24	20	12	1.85
47605500--47605810	27	11.5	27	81	7	301	23	16	17	43	1.88
47610634--47610757	32	3.9	32	83	0	140	41	17	17	23	1.90
47610903--47610960	24	2.4	24	82	0	80	46	24	6	22	1.76
47610983--47611224	27	9.0	27	79	4	222	25	18	19	36	1.94
47611314--47611351	19	2.0	19	100	0	76	15	31	26	26	1.96
47612004--47612145	32	4.5	32	73	4	90	40	17	17	23	1.90
47612019--47612142	32	3.9	32	75	8	117	40	16	17	25	1.90
47612326--47612374	24	2.0	24	88	0	71	42	22	8	26	1.81
47612411--47612697	27	10.6	27	83	3	308	24	17	20	37	1.93
47612417--47612686	109	2.5	108	83	5	346	23	17	21	37	1.94
47619114--47619173	28	2.1	28	90	0	93	31	28	21	18	1.97
47619495--47619555	27	2.3	27	85	0	77	19	16	26	37	1.93
47619536--47619867	27	12.3	27	85	3	400	22	16	18	43	1.88
47623493--47623587	42	2.3	42	88	0	136	27	25	9	37	1.87
47629122--47629341	28	7.8	29	73	8	166	49	7	18	24	1.73
47632295--47632424	64	2.0	65	93	1	226	33	16	13	36	1.89
47637347--47637384	13	2.9	13	85	11	51	52	2	13	31	1.54
47639089--47639127	19	2.1	19	90	0	60	12	2	33	51	1.54
47644723--47645051	27	12.2	27	83	6	328	44	20	17	17	1.87
47644723--47645051	81	4.1	80	81	8	375	44	20	17	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47645230--47645304	26	2.9	26	83	0	96	17	22	21	38	1.93
47653846--47653879	18	1.9	18	94	5	61	70	0	23	5	1.09
47669483--47669519	19	2.0	19	94	5	67	40	0	5	54	1.24
47669483--47669536	19	2.9	18	86	8	65	42	0	5	51	1.25
47670760--47670785	5	5.2	5	100	0	52	19	0	0	80	0.71
47670760--47670793	15	2.2	15	89	5	50	23	0	0	76	0.79
47670976--47671106	30	4.4	30	77	6	115	30	18	6	44	1.76
47671796--47671841	19	2.3	20	85	3	67	69	0	28	2	1.00
47671798--47671843	16	2.9	16	78	18	51	71	0	26	2	0.97
47671812--47671861	19	2.7	19	82	11	52	74	0	22	4	0.99
47672041--47672083	19	2.4	19	80	7	54	20	48	30	0	1.50
47672667--47672931	17	14.9	16	66	19	91	31	14	11	42	1.81
47672732--47672809	37	2.3	32	80	10	84	38	16	8	35	1.80
47672663--47672848	18	10.5	18	64	17	86	36	14	9	40	1.78
47672805--47672885	40	2.0	40	86	9	112	35	12	11	40	1.78
47681161--47681827	75	8.7	76	84	8	736	29	15	20	34	1.94
47681158--47681797	149	4.2	152	83	10	766	29	15	19	35	1.93
47681158--47681827	224	2.9	228	83	8	817	29	15	20	34	1.94
47681483--47681779	162	1.8	160	83	5	391	29	14	21	33	1.94
47682275--47682346	29	2.4	29	86	2	90	33	15	4	47	1.64
47682851--47682901	18	2.8	19	79	8	61	74	1	23	0	0.92
47683029--47683093	10	6.3	10	75	15	53	75	0	23	1	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47683028--47683090	19	3.2	20	80	13	69	73	0	25	1	0.93
47683049--47683094	12	4.0	12	81	15	53	78	0	21	0	0.76
47683030--47683075	16	2.9	16	78	18	51	71	0	26	2	0.97
47683412--47683448	16	2.3	16	90	9	58	81	2	16	0	0.81
47683411--47683453	16	2.5	17	82	17	54	81	2	16	0	0.79
47683410--47683460	16	3.0	16	76	18	50	78	1	19	0	0.85
47683915--47684169	17	14.5	17	69	16	148	29	12	12	45	1.79
47683975--47684078	50	2.1	51	84	12	135	31	11	11	45	1.76
47685970--47686003	16	2.1	16	88	0	50	50	14	17	17	1.79
47699380--47699915	112	4.8	113	87	8	784	29	18	23	28	1.98
47699380--47699898	218	2.3	219	90	6	807	30	18	23	28	1.97
47700014--47700050	19	2.0	19	89	5	58	24	0	5	70	1.08
47700952--47701028	7	11.3	7	81	5	95	6	0	54	38	1.26
47700953--47701023	20	3.5	19	87	11	97	5	0	54	39	1.24
47700954--47701040	21	4.2	21	86	5	90	6	0	49	43	1.29
47702869--47702904	15	2.4	15	90	0	54	36	0	0	63	0.94
47702879--47702941	27	2.3	26	78	19	67	30	3	0	66	1.07
47702935--47703149	77	2.8	77	88	10	300	47	4	5	42	1.46
47703093--47703184	37	2.6	35	76	11	91	51	1	5	42	1.32
47703472--47703507	15	2.3	16	90	4	56	55	8	11	25	1.62
47705097--47705160	7	9.5	6	83	14	65	42	51	0	6	1.27
47705091--47705169	14	5.6	14	81	4	97	41	51	0	6	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47705096--47705169	21	3.5	21	90	3	114	41	52	0	5	1.24
47705720--47705745	13	2.0	13	100	0	52	53	23	0	23	1.46
47706186--47706706	114	4.7	113	90	6	832	28	22	19	29	1.98
47732365--47733022	74	8.7	74	82	10	662	29	16	19	34	1.94
47732365--47732952	149	3.9	149	83	10	680	29	16	19	34	1.94
47733461--47733537	30	2.7	28	82	6	82	29	14	3	51	1.59
47733411--47733537	28	4.4	29	74	9	100	32	16	5	45	1.70
47734040--47734085	18	2.5	19	79	10	60	76	2	21	0	0.90
47734212--47734276	10	6.3	10	75	15	53	75	0	23	1	0.89
47734211--47734273	19	3.2	20	80	13	69	73	0	25	1	0.93
47734232--47734277	12	4.0	12	81	15	53	78	0	21	0	0.76
47734213--47734258	16	2.9	16	78	18	51	71	0	26	2	0.97
47734593--47734631	15	2.7	15	84	15	55	79	5	15	0	0.90
47735093--47735354	17	14.9	16	68	20	109	30	12	12	44	1.79
47735158--47735262	51	2.1	51	85	10	144	32	11	11	44	1.76
47735228--47735308	40	2.0	40	86	9	112	35	13	11	39	1.80
47737164--47737197	16	2.1	16	88	0	50	50	14	17	17	1.79
47739994--47740034	21	2.0	21	95	0	73	31	21	26	19	1.97
47741940--47741973	16	2.1	16	88	0	50	50	14	17	17	1.79
47750347--47751279	114	8.2	114	83	6	927	30	18	23	27	1.98
47750739--47751279	114	4.8	114	95	0	958	30	18	22	28	1.97
47751397--47751432	18	2.0	18	89	10	56	25	0	5	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47752342--47752421	7	11.3	7	86	1	106	6	0	52	41	1.27
47752347--47752433	21	4.1	21	88	5	106	6	0	47	45	1.29
47754017--47754053	16	2.3	16	95	0	65	27	10	8	54	1.63
47754113--47754251	67	2.1	67	95	2	253	36	4	13	45	1.64
47754375--47754832	76	6.1	76	98	0	877	40	7	5	47	1.53
47754920--47754962	16	2.7	16	92	0	68	48	16	2	32	1.58
47755003--47755210	9	23.8	9	69	13	130	45	21	1	31	1.62
47755048--47755169	62	2.0	61	80	6	138	48	21	0	29	1.56
47755070--47755210	25	5.4	25	71	13	88	46	21	1	31	1.60
47760754--47760823	21	3.3	21	86	4	88	41	20	35	2	1.67
47761166--47761414	34	6.8	37	85	12	304	23	20	20	36	1.95
47761166--47761415	108	2.3	110	87	9	350	23	20	20	36	1.95
47761482--47761567	1	86.0	1	95	0	154	1	1	0	97	0.18
47774239--47774308	21	3.3	21	86	4	88	41	20	35	2	1.67
47774669--47774953	43	6.7	42	89	4	394	22	22	21	34	1.97
47779141--47779370	92	2.6	89	85	6	277	37	16	12	33	1.86
47779858--47780010	77	2.0	77	96	0	279	28	2	35	33	1.71
47781342--47781866	27	19.5	27	85	1	586	34	18	20	25	1.96
47781903--47781961	24	2.5	24	77	5	66	20	5	23	50	1.67
47782086--47782136	26	2.0	26	88	0	75	15	23	27	33	1.95
47782132--47782320	32	5.9	31	83	3	189	22	20	18	38	1.94
47782135--47782320	64	2.9	64	85	0	237	22	20	18	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47782132--47782334	96	2.1	95	82	0	235	22	20	18	38	1.93
47782326--47782372	22	2.1	22	84	0	58	19	17	17	46	1.84
47783336--47783407	9	7.4	9	73	14	63	62	2	5	29	1.32
47783312--47783389	21	3.8	21	78	11	72	61	1	6	30	1.29
47783334--47783407	20	3.8	20	76	13	73	63	2	5	28	1.30
47783375--47783418	18	2.3	19	88	7	63	61	6	6	25	1.46
47783559--47783734	9	18.3	10	68	17	72	31	4	2	61	1.28
47783558--47783684	28	4.5	28	72	15	109	31	4	1	62	1.25
47783607--47783703	28	3.5	27	75	14	90	31	3	2	62	1.22
47783559--47783694	19	7.2	19	71	12	84	30	4	1	63	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214