genome.fa.s25.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  163  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48317621--48318299	28	24.3	28	82	8	696	32	1	21	44	1.61
48317537--48317692	62	2.4	63	87	8	208	32	1	20	45	1.62
48317642--48318299	86	8.0	82	77	14	560	31	1	21	45	1.61
48317626--48318299	114	6.1	109	81	9	662	32	1	21	44	1.61
48320445--48320478	15	2.3	15	90	5	52	67	5	0	26	1.13
48320666--48320717	22	2.4	22	90	3	79	32	0	30	36	1.58
48320688--48320747	30	2.0	30	96	0	111	35	0	31	33	1.58
48320685--48320752	11	6.6	10	72	24	61	36	0	29	33	1.58
48320718--48320766	22	2.2	22	89	7	73	38	0	26	34	1.57
48330311--48330456	37	4.0	37	93	1	242	24	21	16	36	1.94
48330420--48330688	46	5.6	46	84	10	340	28	22	14	34	1.93
48330463--48330682	52	4.3	52	85	8	299	27	22	14	35	1.93
48330420--48330688	98	2.7	98	93	0	457	28	22	14	34	1.93
48334727--48334781	27	2.1	26	86	10	76	23	10	23	41	1.86
48334727--48334773	9	5.3	9	94	2	78	21	12	23	42	1.87
48334939--48334963	12	2.1	12	100	0	50	16	24	36	24	1.94
48349284--48349329	12	4.0	12	78	18	53	71	0	2	26	0.97
48349307--48349369	27	2.3	26	81	10	74	65	0	1	33	1.03
48352730--48352779	26	2.0	26	88	4	75	52	6	0	42	1.26
48354680--48354726	16	2.9	17	75	6	53	27	29	2	40	1.68
48355519--48355567	26	1.9	25	91	4	80	0	30	16	53	1.43
48355519--48355581	33	2.0	33	87	6	94	1	28	19	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48358568--48358599	3	10.7	3	100	0	64	68	0	0	31	0.90
48359770--48359847	28	2.9	26	74	12	77	33	3	3	58	1.34
48359790--48359829	21	2.0	21	85	9	57	32	2	2	62	1.22
48363530--48363585	2	28.0	2	96	0	103	48	0	51	0	1.00
48366333--48366418	42	2.0	42	88	4	129	22	19	23	34	1.96
48366746--48366813	21	3.2	21	82	0	82	4	41	19	35	1.71
48372303--48372407	25	4.2	25	81	11	133	33	1	20	44	1.62
48372314--48372567	9	29.4	9	74	12	221	31	1	22	45	1.60
48372318--48372566	34	7.0	34	70	20	145	30	1	22	45	1.60
48372345--48372567	52	4.3	52	76	10	176	30	0	21	46	1.58
48372318--48372567	43	5.8	43	75	12	237	31	1	22	45	1.60
48372583--48372631	26	1.9	26	87	4	73	38	2	6	53	1.38
48372627--48372656	6	5.0	6	100	0	60	83	0	0	16	0.65
48372743--48372780	11	3.2	13	82	17	55	55	0	0	44	0.99
48372718--48372797	12	6.9	12	71	16	53	50	2	1	46	1.23
48373584--48373667	31	2.7	31	92	1	134	42	22	15	19	1.88
48375907--48375992	38	2.2	38	83	8	102	38	38	2	20	1.66
48376132--48376176	21	2.1	21	91	0	72	42	35	4	17	1.70
48376449--48376478	14	2.1	14	93	0	51	36	46	0	16	1.47
48376855--48377166	112	2.8	114	78	5	346	26	23	22	27	1.99
48376955--48377293	186	1.8	183	83	8	445	26	24	22	26	2.00
48377140--48377344	113	1.8	113	83	6	272	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48390642--48390685	19	2.4	19	81	7	56	75	0	18	6	1.02
48391270--48391322	25	2.1	25	89	6	81	26	22	18	32	1.97
48398427--48398789	199	1.8	199	85	0	519	36	13	20	28	1.91
48400890--48400949	30	2.0	31	86	3	86	40	0	38	21	1.54
48401163--48401199	9	4.1	9	85	0	56	32	10	10	45	1.74
48405347--48405399	16	3.3	16	76	10	63	35	24	5	33	1.79
48408166--48408192	3	9.0	3	100	0	54	66	0	0	33	0.92
48411070--48411140	35	2.0	35	100	0	142	43	8	19	28	1.80
48422343--48422488	73	2.0	73	98	0	283	43	10	8	36	1.71
48443833--48443927	37	2.5	37	84	5	120	38	17	17	25	1.92
48444674--48444811	72	2.0	68	85	8	188	50	5	3	41	1.42
48449524--48449614	21	4.3	21	75	5	85	15	21	16	46	1.84
48452491--48452609	52	2.3	52	86	9	165	42	5	22	29	1.77
48453515--48453560	22	2.1	22	84	8	58	52	13	6	28	1.65
48455979--48456027	18	2.7	18	87	0	80	16	38	26	18	1.91
48455979--48456063	36	2.5	32	81	7	98	14	35	27	23	1.93
48460211--48460249	20	2.0	20	90	10	62	15	23	5	56	1.59
48460994--48461067	37	2.0	37	100	0	148	29	35	5	29	1.80
48462711--48462753	21	2.0	21	90	0	68	13	16	25	44	1.85
48462844--48462963	62	2.0	61	84	1	159	31	23	23	21	1.98
48462906--48463092	42	4.3	43	78	7	157	31	28	17	22	1.97
48462911--48463048	44	3.2	43	84	4	170	28	28	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48463112--48463148	18	2.0	19	89	5	58	37	0	0	62	0.96
48464123--48464153	16	1.9	16	100	0	62	38	12	12	35	1.82
48465137--48465176	21	2.0	21	90	5	64	37	0	5	57	1.21
48467299--48467493	41	4.8	40	79	9	216	31	25	18	23	1.98
48467303--48467493	80	2.4	82	80	5	235	32	25	18	23	1.97
48467549--48467668	39	3.1	38	78	7	125	23	20	19	37	1.94
48478899--48478967	33	2.1	33	100	0	138	42	5	15	36	1.72
48479533--48479586	23	2.3	23	83	0	63	62	0	0	37	0.95
48487093--48487125	15	2.3	15	89	5	50	75	0	6	18	1.00
48489464--48489533	33	2.1	33	83	0	86	44	18	4	32	1.69
48489575--48489655	41	2.0	42	87	2	119	23	27	22	27	1.99
48491365--48491822	51	9.8	49	74	12	285	29	18	17	34	1.94
48491336--48491822	44	10.5	45	76	10	362	29	18	18	34	1.94
48491426--48491822	96	4.3	95	80	8	392	28	19	17	34	1.95
48491460--48491822	89	4.0	88	82	8	349	28	19	17	34	1.95
48492379--48492439	11	5.7	11	73	13	56	59	0	1	39	1.08
48492392--48492428	19	1.9	19	100	0	74	67	0	0	32	0.91
48492386--48492446	30	2.0	30	87	0	86	63	0	1	34	1.04
48496599--48496770	85	2.0	85	95	0	308	42	20	16	20	1.89
48496933--48496962	13	2.3	13	100	0	60	40	43	0	16	1.48
48497102--48497169	9	7.4	9	82	9	84	23	10	26	39	1.87
48497329--48497353	12	2.1	12	100	0	50	16	24	36	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48499731--48499764	16	2.2	15	94	5	59	64	0	8	26	1.22
48506296--48506336	17	2.3	19	79	8	50	70	0	4	24	1.06
48510941--48510993	20	2.7	20	81	0	70	47	11	9	32	1.71
48511046--48511079	18	1.9	18	94	5	61	61	2	5	29	1.34
48512427--48512464	18	2.2	18	85	4	51	44	5	0	50	1.24
48517191--48517230	21	1.9	21	94	0	71	25	12	10	52	1.70
48520918--48520952	3	11.7	3	100	0	70	65	0	0	34	0.93
48521388--48521439	24	2.2	24	85	0	68	48	9	5	36	1.60
48525771--48525817	24	2.0	24	87	8	69	48	6	6	38	1.54
48525783--48525833	24	2.1	24	81	0	57	50	5	3	39	1.45
48527948--48528013	24	2.8	24	88	4	73	22	6	22	48	1.72
48527958--48528013	24	2.4	24	90	3	96	26	3	25	44	1.70
48528415--48528461	23	2.0	23	83	0	58	61	8	0	29	1.25
48538361--48538410	25	2.0	25	96	0	91	24	18	16	42	1.89
48543736--48543773	19	2.0	19	89	0	58	39	7	13	39	1.73
48556829--48556860	15	2.1	15	100	0	64	34	18	18	28	1.95
48562522--48562547	3	8.7	3	100	0	52	69	0	0	30	0.89
48570877--48570916	20	2.0	20	90	9	64	25	17	27	30	1.97
48571094--48571136	3	14.3	3	100	0	86	0	32	0	67	0.91
48571658--48571724	3	23.3	3	76	8	59	2	29	0	67	1.06
48573050--48573092	18	2.4	16	82	17	50	41	13	0	44	1.44
48574047--48574080	17	1.9	18	94	5	61	17	44	26	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48576765--48576818	20	2.7	21	78	16	53	27	18	37	16	1.93
48578542--48578600	31	1.9	31	89	0	91	49	3	1	45	1.28
48582939--48582971	17	2.0	17	88	5	50	51	6	0	42	1.26
48584302--48584329	9	3.1	9	100	0	56	57	10	0	32	1.33
48584272--48584413	68	2.1	66	94	2	248	45	9	4	40	1.58
48584402--48584443	16	2.6	16	92	0	66	42	7	2	47	1.43
48584417--48584477	22	2.8	22	84	0	77	47	1	1	49	1.21
48584272--48584435	68	2.5	66	86	10	216	45	9	4	40	1.55
48590337--48590522	37	5.0	37	94	0	300	38	14	20	26	1.91
48590485--48590608	46	2.8	46	90	3	191	33	16	21	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214