genome.fa.s25.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  151  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45015549--45016662	147	7.5	148	92	1	1828	29	16	16	36	1.92
45015549--45016662	295	3.8	295	93	1	1846	29	16	16	36	1.92
45017097--45017167	14	4.9	14	77	14	65	35	42	0	22	1.54
45017112--45017160	7	6.9	7	76	4	53	32	46	0	20	1.51
45017123--45017168	22	2.1	22	83	0	56	39	43	0	17	1.49
45017425--45017479	15	3.7	15	76	11	60	34	47	0	18	1.49
45017425--45017458	8	4.6	7	86	13	50	32	50	0	17	1.47
45017474--45017522	14	3.4	14	83	5	62	34	38	0	26	1.57
45017675--45018210	114	4.7	114	88	3	749	27	26	21	24	1.99
45019640--45019693	27	2.0	27	82	7	65	18	0	31	50	1.48
45019673--45019736	21	3.0	21	84	8	76	17	0	37	45	1.48
45021840--45021865	10	2.6	10	100	0	52	26	11	19	42	1.85
45023241--45023378	44	3.2	44	87	1	197	29	18	26	25	1.98
45028362--45028415	26	2.1	26	83	10	67	12	22	24	40	1.89
45043952--45043991	19	2.2	19	86	4	55	22	0	0	77	0.77
45047551--45047603	19	2.8	20	83	13	67	30	22	5	41	1.77
45051939--45052215	43	6.5	43	86	1	324	27	31	16	24	1.97
45051939--45052215	129	2.2	130	85	3	364	27	31	16	24	1.97
45057391--45057419	15	2.0	15	93	6	51	34	34	0	31	1.58
45057821--45058016	41	4.8	41	90	0	284	29	31	21	17	1.97
45057992--45058114	65	1.9	65	94	0	219	34	24	21	19	1.97
45058119--45058178	31	1.9	31	96	0	111	15	16	25	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45062874--45062903	11	2.7	11	94	0	51	80	13	0	6	0.91
45067893--45067935	20	2.2	20	86	0	59	65	6	0	27	1.18
45070003--45070058	29	1.9	29	89	7	87	41	0	8	50	1.34
45075632--45075684	25	2.2	24	86	3	70	35	15	24	24	1.94
45077956--45078009	28	1.9	28	84	0	72	42	12	12	31	1.81
45082067--45082100	16	2.1	16	89	10	52	20	0	8	70	1.13
45082073--45082110	13	3.0	13	85	14	53	23	0	5	71	1.07
45101683--45101723	3	13.7	3	100	0	82	68	0	0	31	0.90
45103472--45103862	23	16.7	23	75	10	303	40	17	14	27	1.88
45103435--45103862	93	4.6	93	93	2	714	39	17	14	28	1.89
45103463--45103851	188	2.1	188	96	0	706	40	17	14	27	1.88
45104552--45104647	28	3.4	28	92	0	156	30	25	12	32	1.92
45106223--45106274	21	2.5	20	79	14	61	38	0	17	44	1.49
45106833--45106888	25	2.3	25	87	3	78	19	23	21	35	1.96
45106883--45106938	24	2.3	25	84	3	78	17	23	25	33	1.96
45112831--45112879	25	2.0	25	84	8	64	53	14	6	26	1.64
45113075--45113183	41	2.7	41	85	2	157	23	29	18	28	1.98
45113075--45113232	82	1.9	82	80	12	182	25	28	17	28	1.97
45120817--45120849	14	2.4	14	100	0	66	48	12	6	33	1.65
45124556--45124605	26	1.9	26	87	0	73	20	20	20	40	1.92
45124556--45124612	26	2.2	26	83	0	69	17	22	19	40	1.91
45124556--45124693	26	5.5	25	68	15	63	19	25	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45127421--45127499	26	3.0	26	85	3	97	45	20	2	31	1.64
45127481--45127528	20	2.4	20	75	0	51	41	18	0	39	1.51
45128245--45128271	4	6.8	4	100	0	54	77	0	0	22	0.76
45133489--45133665	23	7.4	23	66	21	89	40	16	16	25	1.89
45133512--45133646	25	5.5	25	71	7	125	42	15	16	25	1.87
45133487--45133665	48	3.7	48	93	1	306	41	16	16	25	1.89
45140875--45141075	48	4.2	48	90	2	298	40	15	17	26	1.90
45140922--45141056	25	5.5	25	70	7	116	41	14	16	27	1.87
45140947--45141075	23	5.4	23	67	10	98	39	15	17	27	1.90
45141679--45141832	43	3.7	42	74	12	138	26	28	16	28	1.97
45147016--45147068	19	2.5	22	85	11	67	3	18	3	73	1.14
45147018--45147071	23	2.3	23	75	6	56	3	16	3	75	1.08
45148301--45148365	22	2.8	24	77	11	73	32	13	15	38	1.87
45149342--45149380	15	2.6	15	87	0	51	38	0	7	53	1.30
45149947--45149987	16	2.5	17	81	14	50	39	0	21	39	1.54
45165755--45165786	6	5.3	6	100	0	64	0	15	0	84	0.63
45169501--45169544	19	2.2	20	84	4	63	34	4	4	56	1.40
45170745--45170791	23	2.0	23	100	0	94	38	31	17	12	1.87
45171519--45171753	119	2.0	119	93	1	400	39	10	17	32	1.84
45176349--45176460	56	2.0	56	100	0	224	30	3	23	42	1.71
45179895--45179938	11	3.7	11	77	16	52	36	2	0	61	1.09
45179895--45179948	25	2.1	26	89	3	83	35	1	0	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45181078--45181112	16	2.2	16	89	0	52	54	0	2	42	1.15
45187823--45188185	19	18.7	19	66	24	151	32	0	14	53	1.43
45187892--45188233	48	7.0	48	70	23	200	31	0	14	52	1.47
45187835--45187959	61	2.0	61	83	8	157	32	0	12	55	1.37
45187892--45187983	21	4.2	21	79	18	107	33	0	13	53	1.40
45187826--45188158	175	1.9	173	92	4	564	32	0	13	53	1.43
45187892--45188242	114	3.3	108	74	16	315	31	0	14	52	1.46
45187823--45188113	82	3.4	82	75	17	324	31	0	14	53	1.43
45188102--45188211	8	12.4	8	68	19	58	34	0	15	49	1.51
45188081--45188185	27	4.1	27	90	7	159	34	0	13	52	1.41
45188200--45188252	22	2.4	22	81	6	63	32	0	9	58	1.30
45188227--45188348	60	2.0	60	87	3	174	31	0	13	54	1.46
45188381--45188462	38	2.2	38	97	0	155	54	3	2	39	1.31
45188499--45188540	16	2.7	15	85	7	57	38	2	2	57	1.25
45188669--45188853	21	8.2	21	74	20	119	53	14	0	31	1.45
45188696--45188785	8	10.4	8	69	19	56	47	15	1	35	1.53
45188674--45188844	71	2.5	66	79	14	202	52	14	0	33	1.46
45188722--45188927	19	10.7	19	72	19	128	53	12	0	33	1.38
45188722--45188804	27	3.1	27	92	1	141	51	12	0	36	1.39
45188769--45188854	40	2.2	38	91	4	136	54	11	0	33	1.37
45189654--45189699	20	2.3	20	88	0	65	8	15	15	60	1.57
45189912--45190008	19	4.7	21	77	15	96	35	10	17	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45189911--45189982	19	3.7	19	87	7	108	34	12	16	36	1.87
45194728--45194885	43	3.7	43	86	6	205	20	19	27	32	1.97
45195944--45195987	24	1.9	24	90	9	74	36	0	2	61	1.09
45196084--45196111	9	3.1	9	100	0	56	57	10	0	32	1.33
45196054--45196254	59	3.1	68	84	13	298	45	8	5	40	1.58
45196243--45196284	16	2.6	16	92	0	66	42	7	2	47	1.43
45196258--45196315	22	2.6	23	83	5	75	43	1	1	53	1.21
45197766--45197886	63	1.9	63	84	0	161	39	15	15	28	1.89
45199610--45199726	51	2.3	51	93	0	198	29	22	12	35	1.91
45206588--45206630	20	2.1	20	86	4	59	48	6	18	25	1.73
45206651--45206708	20	2.9	20	80	10	64	36	1	18	43	1.61
45206661--45207316	40	16.3	39	68	15	207	39	5	14	40	1.70
45206830--45206885	20	2.8	20	86	0	76	42	7	10	39	1.67
45206800--45206894	20	4.8	20	77	0	73	40	5	12	42	1.65
45207038--45207173	59	2.3	59	83	3	157	38	5	11	44	1.63
45206994--45207320	20	16.4	20	71	5	151	37	6	14	40	1.72
45206994--45207320	60	5.5	61	69	11	174	37	6	14	40	1.72
45207384--45207485	20	5.1	20	76	7	82	37	4	18	39	1.73
45207378--45207485	40	2.7	40	76	0	108	37	4	17	39	1.71
45207519--45207695	20	8.9	19	75	12	97	40	4	16	38	1.69
45207518--45207700	40	4.6	39	78	8	154	39	4	16	39	1.68
45207519--45207700	60	3.0	60	78	6	190	40	4	16	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45207542--45207702	20	8.1	20	76	4	101	39	3	16	40	1.66
45214008--45214046	19	2.1	19	85	9	53	43	0	12	43	1.42
45214127--45214463	46	7.5	46	93	2	551	33	16	21	28	1.95
45214127--45214460	136	2.5	136	93	2	557	33	16	21	28	1.95
45217090--45217304	91	2.3	92	82	3	252	29	14	23	32	1.95
45217394--45217481	38	2.3	39	82	2	97	31	13	20	34	1.92
45225649--45225712	31	2.1	30	85	8	85	17	7	10	64	1.48
45233901--45233938	17	2.2	18	86	13	53	18	7	13	60	1.56
45237420--45237478	29	2.0	30	90	3	93	59	6	0	33	1.24
45240167--45240215	24	2.0	24	88	0	71	26	6	32	34	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214