genome.fa.s25.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  161  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47783607--47783714	56	1.9	58	84	7	150	31	4	1	62	1.26
47783751--47783796	19	2.4	19	85	3	56	32	2	2	63	1.19
47787067--47787091	13	1.9	13	100	0	50	24	8	0	68	1.16
47787167--47787201	16	2.2	16	89	0	52	22	8	2	65	1.34
47789514--47789575	31	2.0	31	100	0	124	29	6	25	38	1.81
47801414--47801533	61	2.0	61	95	1	215	33	10	8	48	1.67
47806034--47806189	82	1.9	82	93	0	267	17	12	20	48	1.80
47809920--47809967	22	2.2	21	80	20	55	41	0	0	58	0.98
47811179--47811220	19	2.2	19	91	8	68	30	2	9	57	1.44
47816862--47816908	14	3.5	14	74	8	53	48	4	0	46	1.21
47817093--47817139	22	2.1	22	84	7	60	46	0	8	44	1.33
47819813--47819838	6	4.3	6	100	0	52	46	19	0	34	1.50
47824186--47824230	23	2.0	23	90	0	72	40	17	8	33	1.81
47826732--47826763	16	2.0	16	100	0	64	25	31	25	18	1.98
47830784--47830867	43	2.0	43	83	9	109	19	19	29	32	1.96
47831630--47831667	16	2.4	16	86	4	51	36	0	15	47	1.46
47840484--47840614	64	2.0	64	100	0	262	29	12	21	35	1.91
47844969--47845058	25	3.6	25	72	11	69	17	24	18	38	1.92
47845018--47845207	25	7.7	25	72	10	117	16	26	21	35	1.95
47845200--47845254	25	2.2	25	83	0	65	25	20	21	32	1.97
47846098--47846152	23	2.4	23	79	14	60	58	3	0	38	1.16
47848016--47848075	28	2.1	28	82	11	70	46	18	15	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47854133--47854185	25	2.1	25	96	0	97	32	24	0	43	1.55
47858647--47858690	21	2.1	22	83	8	56	27	11	9	52	1.67
47861425--47861464	19	2.2	19	86	13	57	67	0	5	27	1.11
47880103--47880133	15	2.0	16	93	6	55	25	0	25	48	1.52
47880105--47880233	61	2.1	61	81	4	143	31	2	22	44	1.65
47880305--47880372	16	4.2	16	94	0	109	27	0	35	36	1.58
47880353--47880447	45	2.1	44	86	1	127	34	5	26	33	1.79
47880609--47880643	18	2.0	17	88	5	52	54	0	0	45	0.99
47880567--47880639	27	2.7	27	76	8	76	52	2	0	45	1.15
47880756--47880790	18	2.0	17	88	5	52	54	0	0	45	0.99
47880528--47880802	147	1.9	149	95	1	500	46	3	2	47	1.35
47880858--47880910	16	3.4	17	73	21	53	56	0	0	43	0.99
47880784--47880970	60	3.1	59	66	13	157	49	6	2	41	1.42
47880736--47881030	119	2.5	120	93	2	495	50	4	2	43	1.35
47884969--47885003	18	1.9	18	88	11	54	37	0	5	57	1.23
47889205--47889233	3	9.7	3	100	0	58	31	0	0	68	0.89
47889540--47889586	22	2.1	22	96	0	85	25	34	0	40	1.56
47889540--47889638	52	1.9	52	93	0	171	29	31	0	39	1.57
47889591--47889641	22	2.3	22	86	6	68	31	31	0	37	1.58
47892047--47892558	29	17.7	29	95	0	891	44	24	0	30	1.56
47892603--47892727	56	2.2	56	90	2	189	39	12	6	41	1.69
47896339--47896387	15	3.2	15	80	11	55	12	6	2	79	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47896322--47896387	31	2.1	33	83	16	86	15	9	1	74	1.14
47901073--47901114	18	2.3	18	84	8	50	66	4	7	21	1.35
47903022--47903447	44	9.6	44	84	3	559	29	24	14	31	1.94
47903022--47903447	89	4.8	87	88	2	564	29	24	14	31	1.94
47902994--47903447	133	3.4	130	84	4	530	29	25	14	31	1.94
47903393--47903792	132	3.0	131	88	2	426	28	23	17	30	1.97
47903504--47903814	44	7.1	44	65	5	126	27	23	18	30	1.97
47903437--47903812	132	2.8	132	93	0	599	27	23	17	30	1.97
47903708--47903909	108	1.9	107	86	4	289	27	25	17	30	1.97
47903924--47904292	44	8.3	45	75	4	320	29	23	17	30	1.97
47903924--47904305	88	4.3	89	90	1	554	29	22	17	30	1.97
47905405--47905472	7	9.7	7	84	12	95	13	17	0	69	1.20
47910231--47910272	18	2.3	18	84	8	50	66	4	7	21	1.35
47914511--47914539	9	3.2	9	100	0	58	79	0	0	20	0.74
47917416--47917537	43	2.8	44	86	1	165	17	19	34	28	1.94
47917412--47917557	43	3.4	42	80	4	139	23	21	30	24	1.99
47917521--47917721	43	4.7	43	79	6	192	28	31	18	21	1.97
47917521--47917721	86	2.3	85	81	1	231	28	31	18	21	1.97
47918085--47918140	21	2.7	21	82	0	58	7	42	14	35	1.73
47918106--47918150	21	2.1	21	87	0	63	4	42	15	37	1.67
47918120--47918286	66	2.5	66	83	3	203	13	27	18	40	1.88
47921984--47922334	9	41.2	9	69	18	118	39	1	13	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47922043--47922097	25	2.2	25	90	0	83	32	1	16	49	1.56
47921989--47922083	16	5.9	16	75	9	104	33	2	18	45	1.62
47922057--47922117	25	2.4	25	86	0	86	37	0	16	45	1.47
47922004--47922118	34	3.2	34	72	15	99	36	1	17	44	1.59
47922139--47922171	16	2.1	16	100	0	66	30	0	24	45	1.53
47922035--47922176	25	5.6	25	70	17	80	39	1	16	42	1.57
47922035--47922176	34	4.2	33	71	16	96	39	1	16	42	1.57
47922157--47922344	34	5.9	34	76	15	195	40	0	9	48	1.40
47922231--47922276	22	2.1	22	87	0	65	41	0	8	50	1.33
47922197--47922800	56	10.0	57	74	18	348	40	0	9	49	1.41
47922321--47922366	22	2.1	22	95	0	65	41	0	10	47	1.38
47922163--47922800	94	7.0	94	87	8	934	40	0	10	48	1.42
47922565--47922677	22	5.4	22	74	18	107	39	0	10	49	1.37
47922683--47922733	22	2.4	22	90	3	86	41	0	9	49	1.36
47923157--47923401	134	1.8	134	98	0	472	43	12	13	30	1.82
47924805--47924848	12	3.8	12	84	3	54	13	6	2	77	1.07
47925464--47925493	7	4.3	7	100	0	60	16	56	0	26	1.40
47925462--47925553	7	12.4	7	76	11	58	29	46	1	22	1.59
47926254--47926292	15	2.6	15	79	0	51	35	38	0	25	1.56
47926820--47927040	41	5.4	41	76	5	196	37	21	23	17	1.94
47926843--47927040	82	2.4	82	85	0	252	35	22	24	17	1.95
47928159--47928183	13	1.9	13	100	0	50	44	8	16	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47928421--47928472	26	2.0	26	100	0	104	30	19	23	26	1.98
47932483--47932871	88	4.4	89	66	11	226	28	17	22	30	1.97
47932452--47933267	44	18.7	44	66	14	183	29	18	22	30	1.97
47932421--47933354	132	7.1	132	92	0	1450	29	18	22	29	1.97
47932954--47933311	88	4.1	88	67	7	215	29	18	23	28	1.98
47935568--47935608	9	4.4	9	84	3	55	12	4	0	82	0.81
47936301--47936340	3	13.0	3	84	5	53	32	0	2	65	1.06
47937072--47937102	15	2.1	15	93	0	53	19	9	6	64	1.45
47937153--47937464	109	2.9	109	92	1	522	30	16	18	34	1.93
47938853--47938889	9	4.1	9	86	13	58	45	0	0	54	1.00
47939066--47939121	21	2.6	22	81	16	64	48	0	8	42	1.34
47939943--47940005	21	3.1	21	72	19	62	60	1	4	33	1.27
47939957--47940029	30	2.5	29	81	16	80	58	1	5	34	1.29
47939997--47940040	18	2.4	19	88	3	63	59	2	6	31	1.36
47940885--47940922	20	1.9	20	89	10	60	28	0	21	50	1.49
47941824--47941869	24	1.9	24	86	0	65	28	15	17	39	1.90
47955964--47956046	32	2.6	32	88	1	121	15	40	24	19	1.90
47967922--47967959	9	4.2	9	100	0	76	68	0	0	31	0.90
47968455--47968491	9	4.1	9	92	0	65	29	10	13	45	1.77
47968545--47968575	9	3.4	9	90	0	53	38	22	12	25	1.90
47969104--47969143	20	2.0	20	90	0	62	22	17	27	32	1.96
47973748--47973789	18	2.4	17	84	11	50	30	23	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47982168--47982202	12	2.9	12	82	0	52	22	51	20	5	1.68
47995573--47996003	44	9.9	44	79	3	417	33	16	20	30	1.94
47995574--47995939	127	2.8	130	80	3	398	33	16	18	30	1.94
47995573--47996189	88	7.0	88	71	12	431	33	16	19	29	1.94
47997603--47997642	21	1.9	21	90	10	64	22	0	0	77	0.77
47997603--47997642	16	2.5	17	92	8	66	22	0	0	77	0.77
47997704--47997744	3	13.7	3	84	0	55	29	4	2	63	1.28
47999627--47999722	41	2.4	40	91	1	147	28	15	21	34	1.94
48002380--48002438	21	3.0	20	80	9	77	30	25	15	28	1.96
48003234--48003311	35	2.2	34	80	6	84	61	0	2	35	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214