genome.fa.s25.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  47  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12838793--12838832	7	5.7	7	88	8	55	87	2	0	10	0.63
12838801--12838831	13	2.4	13	94	0	53	87	3	0	9	0.66
12838792--12838834	21	2.0	22	90	4	70	86	2	0	11	0.67
12839717--12841097	75	18.0	77	85	5	1608	28	17	21	33	1.96
12839696--12841095	153	9.2	152	85	5	1626	27	17	21	33	1.95
12842039--12842083	15	3.1	15	78	12	58	80	0	17	2	0.82
12842039--12842082	13	3.1	14	80	9	54	79	0	18	2	0.83
12842251--12842304	6	9.5	6	80	15	62	81	0	18	0	0.69
12842251--12842306	22	2.5	21	85	8	76	82	0	17	0	0.68
12842625--12842686	20	3.0	20	79	11	72	80	0	19	0	0.71
12842607--12842686	33	2.5	32	82	9	99	77	0	22	0	0.77
12842627--12842686	12	5.2	12	74	8	61	83	0	16	0	0.65
12843042--12843097	17	3.2	17	80	9	67	35	8	10	44	1.71
12843042--12843097	19	3.1	19	85	7	73	35	8	10	44	1.71
12844797--12844838	21	2.0	20	86	13	59	47	9	11	30	1.72
12844634--12845233	200	3.0	200	99	0	1191	39	15	12	32	1.85
12844997--12845038	21	2.0	20	86	13	59	47	9	11	30	1.72
12849095--12849146	25	2.0	26	85	10	72	25	1	23	50	1.60
12851739--12852052	16	19.0	16	64	25	77	45	16	2	35	1.61
12851776--12851816	13	2.8	15	85	14	59	46	19	0	34	1.50
12851870--12852073	9	23.8	9	68	21	109	47	17	2	31	1.63
12851888--12851956	19	3.8	20	76	20	87	49	20	0	30	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12851890--12851973	35	2.4	35	97	0	159	48	20	0	30	1.50
12851873--12852073	59	3.3	59	84	8	246	47	17	2	32	1.63
12857550--12857600	21	2.4	21	86	0	66	37	17	41	3	1.68
12857484--12857676	87	2.2	87	88	3	282	38	19	31	10	1.86
12857637--12857676	21	1.9	21	89	0	62	35	20	40	5	1.74
12857648--12857689	21	2.0	21	85	0	57	33	19	40	7	1.78
12857528--12857693	87	1.9	87	83	3	199	39	19	30	10	1.85
12858049--12858425	43	8.9	43	76	6	257	24	23	22	29	1.99
12858025--12858441	86	4.9	85	74	6	290	25	23	22	28	1.99
12871183--12871304	44	2.8	43	78	6	120	31	16	22	28	1.96
12873138--12873176	15	2.6	15	80	15	53	25	7	7	58	1.52
12875731--12875779	18	2.7	18	100	0	98	63	0	0	36	0.95
12879491--12879548	28	2.1	28	100	0	116	46	6	15	31	1.72
12886917--12887296	50	7.6	50	87	1	521	21	31	20	27	1.98
12886904--12887297	198	2.0	198	85	3	517	22	30	19	27	1.98
12887313--12887406	48	2.0	48	82	0	116	25	25	20	28	1.99
12890626--12890766	70	2.0	70	100	0	282	36	15	12	34	1.86
12895201--12895848	326	2.0	326	90	0	1010	41	19	5	33	1.76
12896664--12896797	31	4.4	31	85	4	191	45	17	5	30	1.73
12896664--12896820	62	2.5	62	86	4	183	45	17	7	29	1.76
12897383--12897411	11	2.7	11	94	5	51	68	0	3	27	1.05
12897650--12897691	17	2.5	17	80	7	50	40	16	4	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12901878--12901957	11	7.4	11	73	17	60	36	2	0	61	1.10
12901848--12901945	42	2.3	42	89	8	153	35	1	1	62	1.09
12901849--12901894	17	2.7	17	82	0	56	39	0	2	58	1.10
12901871--12901972	42	2.4	42	86	4	134	37	1	0	60	1.08
12901912--12901972	21	3.0	20	77	13	70	39	1	0	59	1.08
12901910--12901997	22	4.1	22	75	15	62	42	2	0	55	1.12
12901939--12901997	22	2.7	22	82	14	70	40	3	0	55	1.16
12902569--12902594	13	2.0	13	100	0	52	61	0	0	38	0.96
12904071--12904098	8	3.5	8	100	0	56	57	0	0	42	0.99
12918019--12918140	25	5.0	25	72	8	108	36	20	23	19	1.95
12922541--12922578	20	2.0	20	90	10	62	65	0	0	34	0.93
12926072--12926102	7	4.4	7	100	0	62	58	0	0	41	0.98
12929638--12929669	17	1.9	16	93	6	55	75	0	15	9	1.05
12932554--12932605	27	1.9	27	96	0	95	21	7	15	55	1.64
12938689--12938723	12	2.9	12	86	0	52	68	0	14	17	1.21
12938881--12938937	26	2.2	26	93	0	96	42	10	17	29	1.83
12941530--12941554	12	2.1	12	100	0	50	24	16	8	52	1.70
12948420--12948482	28	2.2	28	91	2	99	28	23	6	41	1.79
12950470--12950499	14	2.1	14	100	0	60	56	13	0	30	1.37
12953867--12954199	169	2.0	170	84	6	435	26	23	23	27	2.00
12954036--12954881	114	7.6	113	82	7	1025	27	20	25	26	1.99
12954062--12954881	217	3.7	217	80	10	923	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12954036--12954876	331	2.5	332	89	0	1281	27	20	25	26	1.99
12954280--12954825	218	2.5	216	84	5	689	28	20	25	25	1.99
12954611--12954881	115	2.4	114	91	1	425	25	21	26	26	1.99
12954780--12954943	74	2.2	73	88	3	231	25	20	25	29	1.99
12954953--12954988	9	4.0	9	89	10	56	33	0	0	66	0.92
12956118--12956155	17	2.2	17	100	0	76	10	13	10	65	1.47
12956863--12956935	23	3.2	23	92	7	114	17	8	24	49	1.74
12958130--12958235	25	4.2	25	79	14	121	50	5	6	37	1.52
12958123--12958192	23	3.0	23	79	12	88	51	7	8	32	1.60
12961879--12962046	47	3.6	45	70	19	132	45	2	3	47	1.35
12961805--12962012	91	2.3	91	88	0	308	45	3	4	46	1.39
12961843--12961987	44	3.2	43	69	19	116	46	2	3	48	1.31
12961927--12961987	28	2.2	28	85	5	81	45	0	3	50	1.17
12962162--12962216	25	2.2	24	81	15	60	43	0	1	54	1.10
12962350--12962447	45	2.2	45	83	1	117	32	26	5	35	1.78
12962428--12962479	16	3.2	16	88	0	77	34	34	1	28	1.69
12962518--12962608	45	2.0	44	82	2	110	29	5	28	36	1.80
12973888--12974025	39	3.7	38	90	5	185	23	28	22	26	1.99
12973888--12974009	39	3.3	39	93	5	200	23	29	21	25	1.99
12973888--12974061	78	2.3	73	81	13	185	22	28	21	26	1.99
12982034--12982216	39	4.6	39	83	9	189	24	26	22	26	2.00
12990233--12990257	11	2.3	11	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12993942--12994011	25	2.8	25	77	14	63	57	4	5	32	1.42
12995923--12995996	37	2.0	37	97	0	139	32	17	10	39	1.84
12999303--12999534	27	8.6	27	81	4	207	30	27	14	28	1.95
12999331--12999533	54	3.7	54	88	2	282	30	27	14	28	1.95
12999331--12999533	81	2.5	82	85	0	273	30	27	14	28	1.95
13006911--13006956	13	3.5	13	93	0	83	45	2	43	8	1.47
13006907--13006956	26	1.9	26	100	0	100	46	4	42	8	1.52
13011930--13012168	50	4.7	50	77	7	180	26	18	28	25	1.98
13015324--13015400	22	3.2	22	67	22	64	35	7	2	54	1.43
13018087--13018189	45	2.3	45	84	5	145	41	16	18	23	1.89
13018396--13018479	40	2.1	41	84	2	107	44	19	7	29	1.77
13023518--13023567	24	2.1	24	88	3	75	36	14	12	38	1.83
13023923--13023957	15	2.3	15	90	0	52	51	25	5	17	1.67
13032183--13032210	10	2.8	10	100	0	56	32	0	7	60	1.24
13033879--13033912	17	2.0	17	88	0	50	61	8	23	5	1.47
13033954--13033980	11	2.5	11	100	0	54	48	22	11	18	1.79
13036414--13036482	26	2.7	26	95	0	120	42	23	18	15	1.89
13043193--13043613	31	13.8	30	86	2	456	31	8	16	43	1.78
13043193--13043613	123	3.4	122	88	1	551	31	8	16	43	1.78
13043193--13043613	92	4.6	92	85	3	526	31	8	16	43	1.78
13044751--13044934	91	2.0	91	98	0	359	26	19	17	36	1.94
13045497--13045551	21	2.6	21	80	8	58	41	29	3	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13050271--13050334	25	2.6	23	73	9	56	46	17	14	21	1.83
13051572--13051608	13	2.8	13	91	0	56	56	16	0	27	1.40
13051586--13051619	13	2.6	13	90	0	50	61	17	2	17	1.46
13055814--13058111	472	4.9	472	91	0	3606	36	19	11	32	1.88
13055814--13058111	942	2.4	942	90	1	3644	36	19	11	32	1.88
13058402--13058531	49	2.6	49	79	6	138	23	24	20	31	1.98
13058492--13058590	50	2.0	50	85	0	135	19	28	24	28	1.98
13065176--13065221	7	6.6	7	94	0	65	32	28	6	32	1.83
13065169--13065229	21	3.0	21	85	2	79	34	24	4	36	1.77
13065169--13065221	14	3.8	14	87	0	70	35	26	5	32	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214