genome.fa.s25.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  120  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36407346--36407432	45	1.9	45	84	9	115	25	34	21	18	1.96
36409428--36409631	40	5.1	40	85	5	173	26	28	23	22	1.99
36409454--36409631	80	2.2	80	91	0	293	25	28	24	21	1.99
36413823--36413887	27	2.5	26	73	12	69	46	4	1	47	1.32
36414443--36414490	24	2.0	25	88	12	73	8	41	0	50	1.33
36422141--36422292	43	3.5	43	91	0	241	32	31	24	11	1.91
36431304--36431398	41	2.3	41	81	1	111	37	28	18	14	1.91
36446235--36446267	12	2.8	12	86	4	50	27	0	0	72	0.85
36447024--36447091	10	7.3	9	74	12	50	27	4	2	64	1.27
36447519--36447552	12	2.9	11	87	12	50	11	0	11	76	1.02
36452277--36452322	25	1.9	25	86	8	69	15	6	17	60	1.55
36457836--36457888	23	2.3	22	75	9	52	30	7	16	45	1.75
36466599--36466758	44	3.7	44	73	12	136	28	18	23	29	1.98
36466615--36466736	42	2.8	44	73	13	117	28	19	23	27	1.98
36469007--36469146	60	2.3	60	100	0	280	23	15	27	33	1.94
36486098--36486144	20	2.3	20	89	7	69	38	8	19	34	1.82
36486193--36486273	25	3.2	25	84	3	101	25	20	24	28	1.99
36486508--36486602	31	3.1	31	87	0	136	36	14	23	25	1.93
36495535--36495652	39	3.0	39	97	0	218	22	30	25	21	1.99
36499003--36499319	47	6.7	47	97	1	580	31	8	29	29	1.88
36499437--36499515	37	2.1	37	85	0	104	25	17	30	26	1.97
36501377--36501479	43	2.4	43	100	0	206	22	15	35	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36501461--36501534	29	2.6	29	89	4	105	25	16	32	25	1.96
36501845--36502200	40	8.9	40	83	2	369	25	21	27	25	1.99
36501845--36502195	120	2.9	120	83	3	413	25	22	27	25	2.00
36505709--36506121	47	8.7	47	96	0	727	30	8	29	30	1.87
36506239--36506317	37	2.1	37	90	0	122	24	18	31	25	1.98
36512325--36512403	37	2.1	37	90	0	122	25	31	18	24	1.98
36512589--36512822	49	5.0	42	97	2	243	29	29	9	32	1.88
36512522--36513044	47	10.8	48	90	5	754	29	29	8	32	1.87
36512522--36513044	96	5.4	94	88	7	742	29	29	8	32	1.87
36517340--36517524	40	4.7	40	86	6	216	24	22	27	26	2.00
36517392--36517556	80	2.1	79	84	5	208	26	20	26	26	1.99
36520381--36520498	39	3.0	39	97	0	218	22	30	25	21	1.99
36522797--36522846	26	2.0	26	84	4	66	48	0	0	52	1.00
36524718--36524873	79	2.0	80	92	1	260	48	5	15	30	1.68
36526411--36526493	15	5.5	15	73	21	84	19	32	22	25	1.97
36526402--36526498	30	3.2	30	100	0	194	21	34	22	21	1.97
36541419--36541452	17	2.0	17	100	0	68	17	11	29	41	1.85
36557607--36557758	27	5.6	27	91	2	232	30	28	14	26	1.95
36557607--36557758	55	2.8	54	89	2	232	30	28	14	26	1.95
36557607--36557758	82	1.9	82	91	0	250	30	28	14	26	1.95
36557609--36557786	55	3.2	54	84	4	205	31	28	13	26	1.94
36557609--36557786	82	2.1	84	83	6	220	31	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36560962--36561033	28	2.6	28	84	0	99	33	12	25	29	1.92
36562810--36562940	27	4.9	27	89	0	172	29	19	8	41	1.81
36562918--36563191	27	10.2	27	77	8	175	40	21	8	29	1.82
36562918--36563275	54	6.6	54	73	7	233	39	20	9	31	1.84
36562932--36563164	81	2.9	80	87	1	297	41	20	9	29	1.83
36563202--36563253	27	1.9	27	88	7	79	38	13	13	34	1.84
36563307--36563398	27	3.4	27	90	3	132	33	20	26	19	1.96
36564199--36564346	26	5.8	26	87	2	203	26	20	23	29	1.99
36564199--36564346	51	2.9	51	88	5	219	26	20	23	29	1.99
36564491--36564582	42	2.2	42	90	0	139	30	14	20	34	1.92
36564606--36564682	31	2.5	31	86	0	118	31	19	22	27	1.98
36569461--36569485	5	5.0	5	100	0	50	20	0	0	80	0.72
36570909--36571436	263	2.0	262	97	1	995	39	17	20	23	1.93
36574661--36574709	10	4.6	11	76	16	50	14	2	0	83	0.73
36574652--36574707	6	9.8	6	80	7	64	14	3	0	82	0.81
36574652--36574713	27	2.3	26	84	10	81	14	3	0	82	0.80
36574653--36574723	20	3.3	20	75	20	65	16	4	0	78	0.90
36574663--36574729	26	2.4	27	76	13	66	19	4	0	76	0.96
36579052--36579084	13	2.6	13	90	4	50	39	0	12	48	1.40
36582515--36582665	53	2.8	53	86	4	187	29	27	16	26	1.97
36586187--36586274	45	2.0	45	90	0	140	25	13	23	37	1.92
36587837--36587865	9	3.2	9	100	0	58	20	24	0	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36588034--36588062	9	3.2	9	100	0	58	55	0	24	20	1.44
36591915--36591948	17	1.9	18	94	5	61	20	44	23	11	1.84
36591915--36591955	18	2.3	18	87	8	57	21	43	21	12	1.85
36599882--36600050	40	4.2	40	91	2	252	26	28	20	24	1.99
36599882--36600106	80	2.8	80	84	4	267	24	27	22	24	2.00
36599884--36600106	119	1.9	120	81	6	274	24	27	22	25	2.00
36608191--36608456	47	5.7	47	77	8	292	28	25	20	25	1.99
36608144--36608452	93	3.3	93	93	0	537	28	26	20	24	1.99
36608145--36608407	46	5.7	46	75	10	257	28	25	21	24	1.99
36610828--36610863	17	2.1	17	89	0	54	86	0	5	8	0.72
36611043--36611087	23	2.0	23	83	16	58	66	6	8	17	1.40
36617227--36617404	40	4.5	40	87	3	236	23	23	28	24	2.00
36625207--36625370	40	4.1	40	93	1	267	21	23	29	25	1.99
36627044--36627221	59	3.0	59	100	0	356	34	15	18	32	1.92
36629134--36629227	46	2.0	46	93	0	161	30	10	22	36	1.88
36653848--36653932	42	2.0	42	93	4	145	20	23	35	21	1.96
36654958--36655000	20	2.2	20	83	8	52	16	18	2	62	1.43
36658438--36658514	25	3.1	25	86	3	93	40	19	18	22	1.92
36661808--36661960	43	3.6	43	92	0	252	31	32	24	11	1.91
36665228--36665330	51	2.0	51	98	0	197	34	11	22	31	1.90
36673205--36673295	25	3.6	25	81	0	83	38	17	18	25	1.92
36675759--36675828	30	2.3	30	87	4	97	21	22	34	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36677870--36678020	56	2.8	53	76	6	131	33	13	25	27	1.93
36678131--36678216	30	2.9	30	79	6	77	24	15	19	40	1.90
36679407--36679451	20	2.2	21	84	4	56	40	17	2	40	1.62
36681146--36681419	46	6.0	46	87	2	345	39	15	23	21	1.91
36681161--36681424	138	1.9	138	87	3	388	39	16	23	20	1.92
36681508--36681550	13	3.3	13	93	0	68	34	0	27	37	1.57
36692851--36693035	50	3.9	47	80	7	203	26	18	31	23	1.98
36692857--36693035	95	1.8	98	83	7	240	26	18	30	24	1.98
36706402--36706546	40	3.6	40	86	0	191	26	25	25	22	2.00
36711881--36711957	29	2.6	28	86	10	102	28	28	15	27	1.96
36719851--36719918	29	2.3	29	82	5	84	27	29	13	29	1.94
36720199--36720272	29	2.6	29	83	16	100	28	28	14	28	1.96
36719740--36720241	174	2.9	174	96	0	932	31	24	14	30	1.94
36722756--36722800	19	2.4	19	85	7	56	55	22	0	22	1.44
36723138--36723186	19	2.6	19	87	12	82	26	0	14	59	1.36
36725195--36725425	27	8.6	27	84	2	277	37	17	18	26	1.93
36725195--36725426	81	2.9	80	83	6	315	37	17	18	27	1.92
36725410--36725479	27	2.6	28	84	6	90	42	22	5	28	1.76
36725203--36725451	54	4.6	54	80	4	200	38	17	17	27	1.92
36725194--36725451	81	3.2	79	81	9	297	38	17	17	27	1.91
36725516--36725632	54	2.2	55	82	4	148	35	18	19	26	1.95
36726150--36726211	22	2.9	21	80	7	70	20	25	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36726569--36726667	6	16.3	6	70	17	71	18	18	13	50	1.78
36726569--36726658	37	2.5	36	85	1	108	17	18	12	51	1.76
36729483--36729514	11	2.6	13	80	19	50	59	0	0	40	0.97
36730555--36730659	53	2.0	53	100	0	210	40	9	11	39	1.74
36730569--36730652	24	3.1	27	66	27	79	40	9	11	38	1.75
36731204--36731260	25	2.2	27	78	12	75	33	7	17	42	1.76
36731211--36731259	26	1.9	25	87	4	71	32	8	18	40	1.80
36731230--36731296	35	1.9	34	81	3	80	38	4	10	46	1.59
36733246--36733306	17	3.6	18	91	4	76	11	11	1	75	1.12
36733333--36733403	8	8.2	8	72	20	54	11	5	4	78	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214