genome.fa.s25.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  118  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35794690--35794826	50	2.7	50	78	0	130	28	21	27	22	1.99
35802074--35802130	28	2.0	28	96	0	105	52	15	7	24	1.67
35804936--35805049	56	2.0	56	93	0	192	26	19	15	38	1.92
35807043--35807076	18	1.9	18	88	5	52	55	5	5	32	1.48
35823988--35824021	8	4.0	8	88	11	50	47	0	0	52	1.00
35824871--35824923	15	3.6	14	75	7	52	67	0	1	30	1.01
35824902--35824971	19	3.6	18	77	21	63	65	1	1	31	1.10
35824878--35824971	18	4.8	19	71	17	61	63	1	1	34	1.08
35826506--35826539	7	4.9	7	100	0	68	73	0	0	26	0.83
35827550--35827602	11	4.9	11	79	4	63	67	15	9	7	1.39
35827550--35827602	21	2.5	22	84	6	72	67	15	9	7	1.39
35827533--35827599	32	2.1	33	91	2	109	68	14	7	8	1.37
35828252--35828306	18	3.1	17	82	12	65	41	1	0	56	1.10
35828222--35828321	49	2.1	47	81	9	112	36	1	1	62	1.09
35828255--35828308	19	2.8	18	78	10	63	42	1	0	55	1.10
35828298--35828341	21	2.0	21	82	4	52	47	0	4	47	1.22
35831982--35832103	58	2.1	58	92	0	199	37	14	18	28	1.91
35835786--35835820	16	2.2	16	100	0	70	40	25	11	22	1.88
35837964--35838102	72	1.9	73	97	1	262	38	23	5	33	1.78
35841105--35841299	22	8.7	22	83	8	225	41	36	4	17	1.70
35841105--35841302	45	4.4	44	81	10	222	41	36	4	17	1.70
35841105--35841306	112	1.8	112	87	2	307	40	36	4	18	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35844980--35845149	23	7.6	23	76	12	131	19	15	24	41	1.90
35844977--35845148	46	3.8	45	74	17	151	19	15	23	41	1.89
35849530--35849718	91	2.1	91	85	2	254	34	26	13	24	1.93
35852988--35853040	21	2.6	21	90	3	81	37	7	15	39	1.75
35856428--35856479	20	2.5	21	87	6	70	44	25	23	7	1.79
35863226--35863303	28	2.8	28	86	3	113	29	19	24	26	1.98
35865345--35865590	27	9.1	27	73	9	144	34	19	28	18	1.95
35865345--35865590	81	3.0	80	73	10	223	34	19	28	18	1.95
35865350--35865590	54	4.5	54	77	6	200	34	19	28	18	1.95
35871669--35871764	46	2.1	46	98	0	183	41	10	17	30	1.83
35877360--35877411	24	2.2	24	89	0	77	55	9	1	32	1.43
35879329--35879380	24	2.2	24	89	0	77	55	9	1	32	1.43
35901928--35902024	42	2.3	42	83	3	115	21	27	27	22	1.99
35901956--35902213	116	2.2	116	88	0	372	28	24	22	24	1.99
35904139--35904177	20	2.0	20	85	10	53	25	10	2	61	1.41
35909791--35909997	27	7.6	27	93	3	207	30	28	14	26	1.95
35909791--35909997	55	3.8	55	96	0	360	30	28	14	26	1.95
35910425--35910725	150	2.0	150	98	0	575	32	27	9	30	1.88
35922637--35922668	10	3.2	10	100	0	64	62	0	28	9	1.26
35922766--35922969	51	4.0	51	76	6	207	25	15	29	29	1.96
35922777--35922961	101	1.8	102	87	3	275	24	16	28	31	1.96
35922965--35923063	46	2.2	44	82	8	112	24	18	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35926595--35926661	32	2.1	32	97	0	125	41	7	31	19	1.79
35931438--35931510	26	2.8	26	80	0	74	28	16	12	42	1.84
35935354--35935401	25	1.9	25	91	0	78	29	25	18	27	1.98
35935468--35935525	27	2.1	27	84	6	73	46	0	24	29	1.53
35951481--35951545	21	3.3	20	75	23	59	41	18	1	38	1.60
35952883--35952974	45	2.0	45	93	0	157	31	23	18	26	1.97
35952983--35953166	51	3.6	50	72	8	158	32	26	16	24	1.96
35952978--35953162	101	1.8	101	85	3	264	32	25	16	24	1.96
35960762--35960824	10	6.1	10	78	12	65	22	3	1	73	1.07
35964316--35964489	45	3.9	45	84	2	197	39	16	20	24	1.92
35964315--35964489	90	1.9	90	82	2	217	38	16	20	24	1.92
35968155--35968203	22	2.2	22	81	3	53	6	12	2	79	0.99
35968874--35968903	12	2.5	12	94	0	51	30	0	6	63	1.20
35968979--35969055	33	2.4	31	77	10	82	33	5	1	59	1.28
35969001--35969089	29	3.0	29	74	9	81	34	5	1	58	1.29
35969383--35969407	4	6.2	4	100	0	50	24	0	0	76	0.80
35969450--35969480	15	2.1	15	100	0	62	19	6	6	67	1.35
35969529--35969862	109	3.1	108	84	3	415	31	14	16	37	1.89
35973057--35973121	9	7.0	9	74	22	55	84	10	0	4	0.75
35974738--35975064	46	7.1	46	89	1	476	27	17	24	29	1.97
35974738--35976415	138	12.1	138	80	7	1170	27	16	25	30	1.97
35975041--35975087	23	2.0	23	87	0	67	25	17	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35974903--35975225	161	2.0	161	87	1	468	27	17	24	30	1.97
35975005--35975133	69	1.9	69	93	0	222	27	17	26	28	1.97
35975064--35975326	46	5.7	46	85	3	343	26	17	25	30	1.97
35974964--35975179	115	1.9	115	93	0	369	27	16	26	29	1.97
35974857--35975271	207	2.0	207	89	0	632	27	16	25	30	1.97
35975317--35975725	132	3.1	132	92	1	660	31	16	24	26	1.97
35975420--35975643	44	5.1	45	69	12	142	29	17	25	27	1.97
35975704--35976415	46	15.5	46	90	0	1102	25	15	27	31	1.96
35976410--35977105	132	5.3	131	87	2	910	31	17	23	27	1.97
35979150--35979471	109	3.0	109	88	1	470	31	16	17	35	1.92
35981128--35981178	20	2.5	20	81	12	68	52	0	25	21	1.47
35985173--35985203	6	5.2	6	100	0	62	16	16	0	67	1.23
35986841--35987192	175	2.0	176	97	0	661	40	14	13	31	1.84
35987251--35987327	32	2.3	34	79	16	90	48	0	2	49	1.15
35987627--35987729	51	2.0	51	100	0	206	28	9	13	48	1.74
35990355--35990395	21	2.0	21	85	0	55	31	2	4	60	1.30
35994602--35994648	21	2.3	21	85	10	62	31	0	12	55	1.38
35994631--35994795	58	2.9	57	82	7	183	43	1	3	51	1.30
35994961--35995000	16	2.5	17	84	12	57	32	17	5	45	1.70
35995178--35995217	22	1.9	22	90	10	66	12	2	32	52	1.52
36005119--36005163	20	2.2	20	88	0	63	42	11	8	37	1.72
36010106--36010231	62	2.1	58	81	7	137	40	3	5	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36011587--36011762	73	2.4	73	83	4	223	24	25	27	22	2.00
36011655--36012097	114	3.9	114	79	2	471	26	22	25	25	2.00
36011658--36012073	228	1.8	228	83	2	548	25	23	25	25	2.00
36011889--36012284	187	2.1	190	85	2	530	27	22	24	26	2.00
36012017--36012160	73	2.0	73	87	0	207	29	22	22	25	1.99
36012543--36012630	37	2.4	36	86	7	122	19	2	40	37	1.64
36012564--36012630	16	3.9	16	73	17	62	20	1	43	34	1.61
36012712--36012745	7	4.9	7	92	0	59	17	0	38	44	1.49
36012700--36012745	21	2.2	21	88	0	65	19	2	30	47	1.61
36012791--36012841	20	2.5	20	78	9	59	15	0	37	47	1.46
36013091--36013124	15	2.3	15	94	0	59	14	0	41	44	1.45
36013094--36013124	7	4.3	7	92	8	53	16	0	38	45	1.47
36013162--36013194	16	2.1	16	88	5	50	60	6	0	33	1.21
36013520--36014102	114	5.1	114	91	0	923	27	16	21	34	1.95
36014306--36014638	173	1.9	175	91	1	553	22	39	10	27	1.86
36015682--36015740	9	6.8	9	73	5	50	49	20	1	28	1.59
36015853--36016183	9	36.7	9	71	16	206	45	16	1	37	1.55
36015854--36015918	33	2.0	33	96	0	121	52	16	0	30	1.45
36015853--36016151	93	3.3	89	80	8	336	45	16	1	37	1.55
36018455--36018536	43	1.9	43	87	5	121	30	19	24	25	1.98
36018505--36018790	42	6.8	43	89	3	413	24	22	20	32	1.98
36018506--36018792	85	3.4	85	91	2	438	23	22	20	33	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36019749--36019794	14	3.0	16	75	18	53	54	4	0	41	1.20
36019749--36019830	29	2.8	30	77	17	82	52	6	1	40	1.34
36021652--36021811	10	16.2	10	68	18	68	63	6	3	27	1.34
36021652--36021820	9	17.3	9	71	14	70	63	5	2	27	1.32
36021655--36021820	19	8.6	19	65	22	53	63	6	3	27	1.32
36021711--36021820	57	1.9	58	83	5	143	64	6	2	26	1.31
36021711--36021820	29	3.9	28	73	3	85	64	6	2	26	1.31
36026896--36026985	44	2.0	44	93	0	153	41	11	22	25	1.86
36027009--36027255	50	4.9	50	85	2	316	26	20	29	23	1.99
36032822--36032911	44	2.0	44	95	0	162	43	11	23	22	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214