genome.fa.s25.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  128  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38966750--38966840	37	2.4	36	81	15	96	40	3	4	51	1.38
38978446--38978474	15	2.0	15	93	6	51	0	13	0	86	0.58
38997457--38997524	32	2.2	32	84	7	86	36	17	13	32	1.89
38997837--38997907	32	2.2	32	80	7	83	63	4	1	30	1.22
38997866--38997924	27	2.2	26	85	14	77	62	1	3	32	1.21
38997848--38997924	32	2.6	30	84	13	97	62	1	2	33	1.17
38997907--38997985	11	6.5	11	72	17	59	56	0	3	39	1.17
38997889--38997985	50	2.0	47	92	6	158	58	0	3	38	1.14
38997858--38997995	38	3.5	40	74	11	140	60	0	2	36	1.17
39001123--39001167	21	2.1	21	88	8	65	53	35	0	11	1.37
39001343--39001392	19	2.5	20	83	6	66	16	4	34	46	1.65
39001507--39001534	13	2.2	13	100	0	56	28	28	0	42	1.56
39003442--39003511	3	23.3	3	71	5	52	28	7	4	60	1.43
39020060--39020123	26	2.4	27	94	5	112	40	10	0	48	1.38
39020176--39020235	27	2.2	27	81	0	66	31	26	26	15	1.95
39020185--39020236	27	1.9	27	92	0	86	30	23	30	15	1.95
39020344--39020405	19	3.3	19	77	4	81	46	0	12	40	1.42
39020338--39020397	18	3.3	18	76	4	75	48	0	13	38	1.42
39020958--39021009	27	1.9	27	92	0	86	13	30	23	32	1.93
39020960--39021018	27	2.2	27	84	0	73	13	27	27	32	1.94
39021072--39021136	27	2.4	28	97	2	123	49	0	10	40	1.38
39024011--39024051	3	13.7	3	100	0	82	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39028060--39028106	24	2.0	24	86	0	67	21	27	14	36	1.93
39030609--39030638	8	3.8	8	100	0	60	53	13	0	33	1.40
39030878--39031001	22	5.9	21	72	16	96	31	30	0	37	1.63
39031193--39031248	24	2.3	23	77	19	60	28	0	5	66	1.14
39033367--39033441	23	3.2	24	79	5	82	46	26	0	26	1.53
39033494--39033545	23	2.3	23	96	0	95	48	25	0	26	1.52
39033387--39034428	122	8.7	115	85	9	1226	48	23	0	28	1.51
39033607--39033662	23	2.4	23	96	0	103	48	26	0	25	1.52
39033822--39033900	28	3.0	24	89	10	86	48	22	0	29	1.51
39033819--39033907	28	3.4	23	69	26	70	48	25	0	25	1.52
39034076--39034159	28	3.1	24	88	9	78	47	27	0	25	1.52
39034275--39034337	27	2.6	23	77	18	81	46	26	0	26	1.54
39033513--39034431	150	6.0	151	87	7	1237	48	24	0	27	1.52
39033406--39034441	61	17.1	61	79	14	1052	48	23	0	28	1.51
39033412--39034428	33	33.5	33	82	13	899	48	23	0	27	1.51
39037615--39037895	124	2.3	125	82	6	347	32	23	14	29	1.94
39039770--39039808	13	3.1	13	89	10	55	76	0	2	20	0.90
39041619--39042370	94	8.0	94	84	1	941	28	19	20	31	1.97
39044640--39044709	25	2.8	26	72	8	74	27	21	30	21	1.98
39044718--39044787	25	2.8	25	76	4	70	40	15	24	20	1.91
39044752--39044805	25	2.2	25	86	6	74	42	12	24	20	1.87
39056523--39056565	21	2.0	21	86	0	59	37	2	20	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39059751--39059889	25	5.5	25	73	13	99	19	23	19	38	1.94
39059937--39059998	25	2.4	25	76	7	63	24	25	19	30	1.98
39064945--39064978	12	2.8	13	86	13	54	50	0	0	50	1.00
39064952--39065016	22	2.9	22	78	14	71	49	0	4	46	1.22
39064948--39064991	12	3.9	12	80	19	51	50	0	2	47	1.13
39074171--39074203	16	2.1	16	94	0	57	39	27	6	27	1.80
39079384--39079417	18	1.9	17	88	5	50	38	32	26	2	1.71
39101502--39101702	106	1.9	106	97	0	384	30	18	19	30	1.96
39102552--39102608	22	2.6	23	78	18	75	64	3	7	24	1.34
39103320--39103344	13	1.9	13	100	0	50	68	0	8	24	1.16
39104064--39104800	132	5.6	132	85	3	1018	29	26	16	27	1.97
39104051--39104774	88	8.3	88	85	3	838	29	26	16	28	1.97
39117433--39117530	43	2.2	44	83	3	135	28	19	19	32	1.96
39117460--39117564	44	2.4	43	80	4	113	29	20	19	30	1.97
39126206--39126266	18	3.2	18	65	13	50	14	31	16	37	1.89
39126763--39126798	19	1.9	18	88	5	54	44	2	22	30	1.67
39130002--39130036	5	7.0	5	100	0	70	60	0	0	40	0.97
39134676--39134891	41	5.3	41	86	1	290	24	22	24	29	1.99
39135298--39135331	14	2.3	15	90	5	52	35	0	29	35	1.58
39135393--39135570	82	2.2	82	86	4	252	25	3	25	44	1.71
39136673--39136731	22	2.7	23	78	7	68	28	42	3	25	1.71
39136612--39136935	163	2.0	163	99	0	639	35	31	4	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39136836--39136894	22	2.7	23	78	7	68	28	42	3	25	1.71
39140663--39140710	22	2.0	23	84	11	62	54	2	2	41	1.24
39140735--39140939	43	4.8	43	88	0	250	22	17	30	29	1.96
39142242--39142285	21	2.0	22	86	4	63	36	4	13	45	1.64
39142475--39142519	23	2.0	23	81	0	54	22	0	15	62	1.33
39142802--39142878	37	2.1	37	80	11	86	37	7	2	51	1.45
39144619--39144669	18	2.5	20	81	15	61	56	0	1	41	1.10
39144592--39144691	42	2.4	42	81	9	107	54	0	2	44	1.11
39145096--39145138	23	1.9	22	86	13	61	51	0	11	37	1.39
39148370--39148479	54	2.0	54	89	3	168	25	44	1	28	1.64
39150140--39150806	114	5.9	111	79	6	572	32	18	22	26	1.97
39150254--39151037	208	3.5	226	81	8	827	32	18	22	27	1.97
39151256--39151326	14	5.0	14	69	16	56	22	1	35	40	1.63
39152468--39152514	22	2.1	22	96	0	85	27	8	23	40	1.83
39152854--39152969	36	3.2	36	70	16	114	29	6	18	46	1.72
39152821--39153021	71	2.8	71	96	1	368	25	4	18	50	1.67
39153157--39153186	14	2.1	14	100	0	60	26	13	6	53	1.64
39154610--39154649	11	3.7	11	90	3	64	35	10	27	27	1.89
39155992--39156290	17	16.6	17	70	24	161	43	11	1	42	1.51
39156009--39156172	40	3.7	40	73	24	157	43	10	1	43	1.50
39155983--39156132	57	2.6	57	95	2	266	44	11	1	42	1.48
39156012--39156323	97	3.2	97	93	4	518	42	10	2	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39156109--39156233	57	2.1	60	92	5	211	44	12	1	42	1.51
39156004--39156306	101	3.0	100	93	5	533	42	10	1	44	1.50
39156158--39156273	44	2.7	43	90	5	184	43	11	1	43	1.50
39156202--39156323	57	2.1	57	92	0	199	41	10	2	45	1.52
39156295--39156365	13	5.5	13	86	0	106	39	7	2	50	1.44
39156295--39156366	26	2.8	26	100	0	144	40	6	2	50	1.44
39156631--39156857	19	12.5	19	67	23	91	46	19	0	33	1.56
39156646--39156724	18	4.4	18	68	25	69	45	18	0	35	1.50
39156629--39157032	26	16.0	26	84	9	516	46	20	0	32	1.56
39156804--39156934	19	7.5	19	62	26	65	48	20	0	30	1.55
39157024--39157077	9	5.7	10	79	20	55	42	20	0	37	1.52
39156998--39157063	18	3.6	18	84	10	89	46	18	0	34	1.49
39156913--39157077	18	9.5	18	66	30	69	45	20	0	33	1.52
39162528--39162598	21	3.4	21	80	0	79	33	18	45	2	1.64
39162822--39162855	14	2.4	14	95	0	59	17	8	20	52	1.71
39162922--39163253	42	7.9	42	87	1	198	28	21	20	29	1.98
39162924--39163249	126	2.6	125	86	1	357	27	21	20	29	1.98
39163011--39163297	42	6.8	42	91	2	443	23	22	21	32	1.98
39162924--39163297	84	4.5	82	85	4	442	27	21	20	30	1.98
39163919--39163959	21	2.0	21	85	0	55	43	19	21	14	1.87
39166382--39166467	40	2.2	41	87	6	124	41	3	5	48	1.44
39168086--39168130	22	2.0	22	82	0	54	40	4	4	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39171089--39171129	8	5.1	8	81	0	55	65	2	0	31	1.05
39173537--39173573	19	2.0	19	89	5	58	40	5	2	51	1.39
39173556--39173600	22	2.0	22	82	0	54	40	4	4	51	1.42
39175788--39175886	25	4.0	25	78	0	81	21	26	17	35	1.95
39175846--39175901	24	2.3	25	90	3	87	17	23	19	39	1.92
39175814--39176012	25	8.0	25	77	7	145	22	25	18	34	1.96
39179575--39179613	20	2.0	20	85	10	53	33	10	0	56	1.33
39180306--39180348	22	2.0	22	86	9	61	60	0	0	39	0.97
39182904--39182937	5	7.0	5	90	6	52	44	0	0	55	0.99
39183843--39183967	43	2.9	43	75	7	119	21	20	28	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214