genome.fa.s25.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  123  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37384644--37384681	19	2.0	19	94	0	67	28	26	5	39	1.78
37390548--37390607	26	2.3	26	82	5	68	31	21	21	25	1.98
37390561--37390613	26	2.0	27	89	10	83	26	20	22	30	1.98
37391886--37391925	6	7.2	6	91	2	50	62	0	2	35	1.09
37392165--37392210	21	2.2	21	84	3	58	39	8	19	32	1.82
37402369--37402404	6	6.2	6	93	6	65	16	0	0	83	0.65
37402909--37403554	215	3.0	215	99	0	1283	38	8	17	35	1.80
37430691--37430761	20	3.5	20	75	3	70	23	21	21	33	1.97
37430694--37430798	41	2.6	40	80	4	120	23	20	20	35	1.96
37431687--37431729	22	2.0	22	81	9	52	13	11	11	62	1.54
37432737--37432762	5	5.2	5	100	0	52	42	0	0	57	0.98
37434173--37434231	26	2.3	25	91	5	100	16	27	6	49	1.71
37439332--37439433	53	1.9	53	81	0	123	26	25	25	22	2.00
37444793--37444838	19	2.3	21	82	17	62	15	0	13	71	1.14
37446597--37446671	25	3.0	25	83	9	82	32	18	21	28	1.97
37446624--37446701	24	3.2	24	79	15	97	34	12	21	30	1.91
37447826--37447890	27	2.5	26	73	12	69	43	6	1	49	1.37
37452672--37452845	89	2.0	89	92	0	294	35	20	15	28	1.93
37455505--37455538	16	2.2	15	89	5	50	44	0	0	55	0.99
37460115--37460199	42	2.0	42	93	0	143	34	5	16	43	1.72
37466164--37466202	20	2.0	20	85	10	53	2	7	15	74	1.15
37467464--37467493	14	2.1	14	93	0	51	6	10	6	76	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37469665--37469711	25	2.0	23	83	8	58	10	31	4	53	1.55
37472071--37472355	50	5.7	50	91	0	417	26	21	31	20	1.98
37482366--37482410	22	2.0	23	82	8	56	40	24	4	31	1.75
37487730--37487772	20	2.1	21	82	4	52	0	39	0	60	0.97
37487879--37487920	15	2.7	15	80	16	50	7	16	0	76	1.00
37490423--37490560	50	2.8	50	81	0	159	23	31	20	25	1.98
37492640--37492682	6	7.2	6	100	0	86	16	16	0	67	1.24
37495993--37496068	38	2.0	39	92	2	127	51	26	2	19	1.60
37496200--37496274	37	2.0	37	89	0	114	36	4	14	45	1.64
37505410--37505440	3	10.3	3	92	0	53	64	0	32	3	1.09
37511928--37511987	31	1.9	31	83	6	77	46	13	6	33	1.69
37517566--37517731	27	6.1	27	81	6	183	27	15	27	30	1.96
37517566--37517720	55	2.9	54	79	11	174	26	15	27	30	1.96
37534413--37534590	27	6.6	27	83	3	205	26	15	28	29	1.96
37534414--37534569	82	1.9	81	88	3	233	26	15	28	29	1.96
37534410--37534590	82	2.2	81	83	2	229	27	15	27	29	1.96
37542463--37542640	27	6.6	27	83	3	205	26	15	28	29	1.96
37542464--37542619	82	1.9	81	88	3	233	26	15	28	29	1.96
37542460--37542640	82	2.2	81	83	2	229	27	15	27	29	1.96
37545822--37545850	15	1.9	15	100	0	58	62	10	6	20	1.50
37555104--37555193	9	9.8	9	81	4	99	36	1	37	24	1.63
37555108--37555193	19	4.7	18	77	8	75	37	1	37	24	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37555134--37555193	28	2.1	28	87	0	84	35	1	40	23	1.65
37555108--37555193	37	2.3	37	82	5	111	37	1	37	24	1.63
37555574--37555625	26	2.0	26	85	7	70	44	0	3	51	1.19
37555609--37555654	21	2.1	22	84	11	60	41	0	2	56	1.11
37555589--37555648	20	3.0	21	80	9	63	45	0	1	53	1.10
37562669--37562748	40	2.0	40	85	4	108	30	22	22	25	1.99
37562866--37562992	40	3.2	39	81	6	130	29	19	25	25	1.99
37563179--37563215	14	2.5	15	95	4	67	18	0	45	35	1.50
37563282--37563440	64	2.5	64	79	11	155	21	0	35	42	1.58
37563338--37563417	21	3.7	22	74	17	78	20	0	40	40	1.52
37563459--37563527	28	2.4	28	83	13	88	18	2	39	39	1.66
37563481--37563578	7	13.9	7	73	14	76	25	1	33	39	1.63
37563675--37563941	125	2.1	125	83	6	326	34	14	21	29	1.93
37565650--37566382	123	5.9	122	71	16	434	43	8	2	45	1.47
37565867--37565919	20	2.6	21	78	3	63	41	11	0	47	1.39
37565798--37566032	97	2.4	100	92	2	395	42	8	1	46	1.45
37566039--37566113	12	6.2	12	83	14	100	42	6	0	50	1.28
37566039--37566113	27	3.1	24	83	14	100	42	6	0	50	1.28
37566105--37566296	100	1.9	100	97	0	366	44	7	1	46	1.39
37566453--37566531	9	8.8	9	73	5	52	45	15	1	37	1.54
37567748--37567943	49	3.9	50	78	9	193	26	20	29	22	1.99
37569865--37570042	27	6.6	27	82	3	196	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37569862--37570042	82	2.2	81	82	2	220	27	14	27	30	1.95
37577995--37578171	27	6.6	27	83	4	205	27	15	28	29	1.96
37577996--37578151	82	1.9	81	88	3	233	26	15	28	29	1.96
37589665--37589703	20	2.0	20	89	0	60	53	2	25	17	1.56
37590791--37590845	24	2.3	23	84	12	67	56	12	1	29	1.47
37590819--37590998	52	3.4	53	78	13	174	48	18	0	32	1.52
37590852--37591116	9	30.7	9	74	10	155	46	18	1	33	1.57
37590819--37591043	61	3.8	61	78	8	275	47	18	1	32	1.57
37590870--37590989	45	2.7	44	92	2	188	48	17	0	34	1.48
37602460--37602537	39	2.0	39	97	0	147	23	11	29	35	1.90
37604153--37604608	47	9.6	47	88	3	660	32	7	30	30	1.85
37604153--37604608	96	4.8	94	92	2	678	32	7	30	30	1.85
37604729--37604804	37	2.1	37	89	0	116	22	18	32	26	1.97
37607875--37607915	20	2.0	20	100	0	82	65	9	14	9	1.46
37608373--37608427	27	2.0	28	85	3	76	12	49	5	32	1.64
37610453--37610645	50	3.7	50	79	6	199	27	22	27	22	1.99
37610893--37610941	20	2.5	20	78	15	57	59	4	26	10	1.48
37617664--37617857	50	3.9	50	78	4	178	27	21	28	22	1.99
37618059--37618107	20	2.5	20	81	15	66	57	6	24	12	1.58
37628262--37628385	41	3.0	41	85	2	151	14	20	28	36	1.92
37637203--37637287	44	1.9	44	82	2	107	42	1	2	54	1.21
37647763--37647797	18	1.9	18	88	11	54	31	5	8	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37649770--37649833	30	2.1	31	82	8	78	40	17	9	32	1.81
37651856--37652001	56	2.8	53	82	6	163	28	19	27	24	1.98
37660098--37660255	75	2.1	75	83	0	199	27	28	14	29	1.95
37661986--37662028	22	2.0	22	82	17	54	13	11	9	65	1.48
37669661--37669691	15	2.1	15	93	0	53	38	9	12	38	1.77
37671866--37671899	17	2.0	17	100	0	68	23	29	5	41	1.78
37684208--37684247	20	1.9	22	90	10	66	40	2	0	57	1.12
37684338--37684426	27	3.3	27	93	0	142	26	23	30	19	1.98
37684435--37684643	21	10.2	21	68	19	113	29	0	12	56	1.40
37684456--37684602	61	2.4	61	93	1	242	29	0	12	57	1.40
37684577--37684638	19	3.2	19	91	8	106	30	0	14	54	1.40
37684634--37684749	60	1.9	60	89	0	178	34	1	12	51	1.49
37684871--37684907	16	2.4	16	90	4	58	37	2	5	54	1.38
37696560--37696593	10	3.4	10	92	8	52	23	8	0	67	1.18
37704155--37704189	16	2.2	16	100	0	70	14	28	20	37	1.91
37708328--37708802	44	10.1	45	65	18	159	32	18	20	28	1.96
37708262--37708783	142	3.7	142	92	0	857	32	18	21	28	1.96
37708261--37708783	283	1.8	283	93	0	902	32	18	21	28	1.96
37708636--37708834	98	2.0	98	90	1	310	33	16	20	29	1.94
37708912--37709042	50	2.6	50	81	0	136	34	25	16	24	1.95
37720815--37720999	50	3.7	50	82	2	196	22	26	23	27	2.00
37724476--37724523	20	2.4	20	86	6	62	39	10	2	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37729402--37729495	25	3.8	25	81	4	75	24	27	18	29	1.98
37730712--37730835	66	1.9	66	87	0	185	33	18	18	29	1.95
37731388--37731431	20	2.2	20	84	8	54	61	4	15	18	1.50
37732368--37732396	15	1.9	15	100	0	58	31	13	34	20	1.92
37739796--37739852	19	2.9	20	86	5	89	24	26	3	45	1.69
37741595--37741771	50	3.4	51	82	4	178	28	19	27	23	1.99
37741595--37741826	50	4.5	50	79	5	173	29	19	26	24	1.99
37742035--37742073	12	3.2	12	85	0	51	51	5	23	20	1.67
37745931--37746078	50	2.8	54	87	6	196	25	21	30	22	1.99
37748978--37749163	50	3.7	51	81	5	184	32	24	16	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214