genome.fa.s25.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  115  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34912532--34912569	17	2.3	16	83	16	51	73	0	0	26	0.83
34914495--34914535	18	2.2	19	91	4	66	58	0	0	41	0.98
34914503--34914535	5	7.0	5	86	13	52	60	0	0	39	0.97
34914503--34914535	9	3.5	10	88	12	52	60	0	0	39	0.97
34914871--34914904	2	17.0	2	100	0	68	50	0	0	50	1.00
34915171--34915203	15	2.1	16	88	11	50	60	0	6	33	1.21
34915458--34915525	24	2.9	24	72	16	61	52	1	0	45	1.09
34916508--34916688	75	2.3	75	83	8	229	25	6	12	56	1.58
34922311--34922351	22	1.9	22	85	5	57	29	9	2	58	1.43
34927388--34927624	46	5.1	46	86	4	325	42	17	13	27	1.86
34929788--34930285	47	10.6	47	89	6	758	28	29	9	32	1.88
34929788--34930285	145	3.5	143	92	4	773	28	29	9	32	1.88
34930183--34930264	41	2.0	41	100	0	164	26	29	9	34	1.88
34935324--34935375	23	2.3	22	75	21	54	9	23	1	65	1.32
34935369--34935407	18	2.2	18	85	0	51	12	23	2	61	1.43
34937935--34938065	40	3.2	40	87	1	172	32	26	15	25	1.95
34944407--34944687	46	6.1	46	86	2	386	41	17	14	26	1.88
34945383--34945518	41	3.3	40	85	7	166	33	25	16	25	1.96
34945404--34945518	40	2.8	42	88	3	155	32	27	16	23	1.96
34945383--34945539	41	3.9	39	82	5	154	32	24	15	26	1.96
34950712--34950796	44	1.9	45	90	4	138	43	2	3	50	1.32
34950713--34950795	23	3.7	23	68	14	64	43	2	3	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34953148--34953188	21	1.9	22	85	5	57	48	0	2	48	1.14
34968436--34968621	40	4.7	40	88	5	243	26	27	22	24	2.00
34976403--34976588	40	4.7	40	90	4	268	26	27	21	24	1.99
34978571--34978602	16	2.0	16	93	0	55	31	0	9	59	1.29
34982263--34982306	23	1.9	23	95	0	79	27	4	25	43	1.74
34982791--34982832	21	2.0	21	100	0	84	52	19	9	19	1.72
34989429--34989585	43	3.6	44	82	4	171	27	14	25	32	1.95
34989414--34989590	42	4.1	41	76	17	155	27	13	24	33	1.93
34989444--34989602	85	1.8	86	81	9	198	28	13	25	32	1.93
34989466--34989630	42	3.9	42	78	6	149	28	12	26	32	1.93
34992795--34992893	11	9.9	11	69	24	51	57	0	2	40	1.10
34992756--34992911	40	3.8	39	83	9	179	61	0	1	35	1.12
34992896--34992920	8	3.1	8	100	0	50	84	0	0	16	0.63
34993325--34993411	43	2.0	43	93	0	147	21	26	1	50	1.56
34994053--34994100	25	2.0	24	87	4	69	33	10	0	56	1.34
34994569--34994623	23	2.3	23	78	9	58	43	1	1	52	1.22
35001334--35001373	21	2.0	20	86	13	57	20	20	2	57	1.52
35013135--35013174	20	1.9	21	85	10	55	55	12	7	25	1.63
35019398--35019460	32	2.0	32	100	0	126	33	19	9	38	1.84
35028593--35028652	27	2.2	27	93	0	102	36	20	15	28	1.92
35045612--35045647	18	2.0	18	94	0	63	41	16	8	33	1.78
35046259--35046287	14	2.1	14	100	0	58	20	6	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35047824--35047850	14	1.9	14	100	0	54	44	11	7	37	1.68
35091963--35092063	52	1.9	53	91	2	168	31	7	27	32	1.86
35104706--35104891	50	3.7	50	82	3	207	30	21	24	23	1.99
35108025--35108052	14	2.0	14	100	0	56	28	7	7	57	1.52
35109976--35110144	56	3.3	49	80	7	142	28	21	26	23	1.99
35125610--35125635	12	2.2	12	100	0	52	50	7	0	42	1.31
35126114--35126291	27	6.6	27	83	3	205	26	15	28	29	1.96
35126115--35126270	82	1.9	81	88	3	233	26	15	28	29	1.96
35126111--35126291	82	2.2	81	83	2	229	27	15	27	29	1.96
35134228--35134405	27	6.6	27	83	3	205	26	15	28	29	1.96
35134229--35134384	82	1.9	81	88	3	233	26	15	28	29	1.96
35134225--35134405	82	2.2	81	83	2	229	27	15	27	29	1.96
35137466--35137504	17	2.5	15	84	12	51	5	0	25	69	1.09
35140371--35140443	29	2.5	29	93	0	119	43	13	9	32	1.77
35143928--35144038	40	2.8	42	82	6	133	25	23	28	22	1.99
35160414--35160465	26	2.0	26	100	0	104	19	11	30	38	1.87
35160669--35160712	20	2.1	22	91	8	74	18	4	22	54	1.61
35168498--35168628	51	2.6	51	83	2	156	24	16	27	32	1.96
35176189--35176427	40	6.0	40	86	0	316	15	31	17	35	1.91
35176189--35176413	20	11.2	20	67	9	118	14	32	17	35	1.91
35176982--35177010	12	2.4	12	100	0	58	27	41	24	6	1.80
35177970--35178013	21	2.0	21	86	8	61	40	15	9	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35178231--35178323	42	2.2	42	92	0	150	36	13	16	33	1.88
35182041--35182224	40	4.6	40	80	9	189	25	23	27	23	2.00
35182096--35182247	79	1.9	79	82	7	193	27	20	26	25	1.99
35186684--35186944	39	6.6	39	86	6	311	25	21	27	24	1.99
35186684--35186944	77	3.3	78	85	8	311	25	21	27	24	1.99
35186713--35186977	77	3.4	79	81	10	242	27	20	27	24	1.99
35203271--35203296	12	2.2	12	100	0	52	50	7	0	42	1.31
35203771--35203948	27	6.6	27	83	3	205	26	15	28	29	1.96
35203772--35203927	82	1.9	81	88	3	233	26	15	28	29	1.96
35203768--35203948	82	2.2	81	83	2	229	27	15	27	29	1.96
35209662--35209969	45	6.8	45	77	9	270	39	14	18	26	1.90
35209678--35209927	135	1.9	135	80	6	301	39	14	18	27	1.89
35210056--35210114	27	2.2	27	84	6	75	38	18	22	20	1.93
35212227--35212267	20	2.0	20	100	0	82	36	24	9	29	1.87
35226225--35226380	76	2.1	76	100	0	312	39	16	11	32	1.85
35226786--35226864	39	2.0	39	100	0	158	15	12	12	59	1.61
35233343--35233378	16	2.2	16	100	0	72	36	16	5	41	1.72
35237738--35237855	50	2.3	50	85	1	164	50	11	14	24	1.75
35237788--35238706	84	11.0	84	80	7	867	45	10	11	31	1.75
35237676--35237937	135	1.9	135	87	6	379	48	11	11	29	1.73
35237788--35238539	167	4.4	167	83	7	769	46	11	10	32	1.74
35237788--35238706	251	3.7	248	79	9	872	45	10	11	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35237919--35238561	172	3.8	172	78	12	450	45	11	11	32	1.75
35242492--35242531	17	2.4	17	82	0	53	65	2	0	32	1.06
35248356--35248420	30	2.2	30	85	0	94	18	30	29	21	1.97
35250042--35250073	7	4.6	7	100	0	64	43	12	28	15	1.83
35255679--35255735	26	2.2	26	90	0	87	36	12	12	38	1.80
35262595--35262749	40	3.9	40	88	3	240	42	24	16	16	1.88
35262579--35262759	80	2.3	80	84	2	258	43	25	16	14	1.85
35263661--35263744	42	2.0	42	95	0	150	36	10	8	44	1.70
35263723--35263775	21	2.7	19	77	11	54	26	9	0	64	1.24
35264077--35264173	30	3.2	30	75	2	106	28	26	15	28	1.96
35272798--35272840	21	2.0	21	90	0	68	53	6	0	39	1.28
35275680--35275721	21	2.0	21	85	4	57	11	19	26	42	1.85
35275764--35275968	43	4.8	43	90	4	310	26	33	19	20	1.97
35275984--35276015	14	2.1	16	88	11	50	43	6	0	50	1.27
35276238--35276328	43	2.1	43	89	2	139	43	9	9	36	1.71
35277383--35277407	2	12.5	2	100	0	50	52	48	0	0	1.00
35288077--35288116	14	2.9	14	88	3	55	27	22	17	32	1.96
35289804--35290027	49	4.4	50	78	8	168	24	25	21	28	1.99
35294221--35294261	7	5.9	7	100	0	82	43	0	0	56	0.99
35295480--35295553	29	2.5	31	86	8	100	22	13	16	47	1.81
35295505--35295578	29	2.5	29	82	4	85	25	14	13	45	1.82
35301086--35301164	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35301281--35301573	47	6.2	47	87	1	415	28	30	8	32	1.87
35301281--35301578	143	2.1	141	86	3	425	28	30	8	32	1.87
35302996--35303020	13	1.9	13	100	0	50	32	16	20	32	1.94
35310814--35310907	46	2.0	46	100	0	188	26	17	25	30	1.97
35311215--35311248	6	5.7	6	100	0	68	35	0	0	64	0.94
35311658--35311729	21	3.5	20	70	17	58	58	2	4	34	1.32
35311665--35311738	22	3.5	21	72	18	64	56	2	4	36	1.32
35311644--35311740	42	2.4	39	75	14	106	55	2	4	38	1.31
35311748--35311787	19	2.2	18	86	4	53	62	2	7	27	1.35
35311770--35311814	19	2.2	19	84	11	54	64	0	4	31	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214