genome.fa.s25.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  164  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48610493--48610530	13	3.0	13	84	3	51	63	0	2	34	1.09
48610972--48611019	25	2.0	24	84	12	62	33	2	0	64	1.05
48611203--48611248	16	2.8	16	80	3	56	23	4	4	67	1.27
48611291--48611321	16	1.9	16	93	0	53	45	3	0	51	1.17
48618759--48618877	51	2.4	51	88	1	177	56	5	1	36	1.31
48626341--48626380	21	1.9	21	89	0	62	37	25	10	27	1.88
48626537--48626592	22	2.5	22	85	5	69	21	1	32	44	1.63
48628359--48628411	17	3.1	17	80	0	61	20	16	7	54	1.66
48630446--48630513	30	2.3	30	84	5	84	47	5	19	27	1.72
48632944--48633258	46	6.8	46	94	0	506	37	15	24	22	1.93
48635664--48635712	17	2.9	17	84	0	71	28	18	4	48	1.66
48642294--48642351	30	1.9	30	86	6	82	41	6	24	27	1.80
48642689--48642930	50	4.8	50	91	1	378	25	22	31	20	1.98
48647691--48647739	15	3.3	15	86	13	66	46	4	6	42	1.47
48647712--48647745	15	2.3	15	89	0	50	47	8	2	41	1.50
48647709--48647817	36	3.1	36	75	17	111	46	8	4	40	1.54
48649001--48649033	5	6.6	5	89	10	50	21	0	0	78	0.75
48653324--48653413	44	2.0	44	89	0	135	37	8	3	50	1.50
48661011--48661035	13	1.9	13	100	0	50	24	44	0	32	1.54
48662016--48662070	28	2.0	28	100	0	110	32	21	20	25	1.97
48663227--48663259	14	2.5	13	90	9	50	75	0	24	0	0.80
48665071--48665138	30	2.3	30	97	0	127	23	26	36	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48667472--48667537	18	3.7	18	79	0	69	30	19	24	25	1.98
48668448--48668482	13	2.7	13	95	0	61	51	0	2	45	1.16
48669595--48669628	16	2.1	16	88	0	50	41	2	20	35	1.68
48680560--48681172	94	6.6	93	79	4	578	32	18	20	28	1.96
48680560--48681157	188	3.2	187	80	4	649	32	18	20	28	1.96
48680620--48681293	44	14.7	44	70	15	321	31	18	21	28	1.97
48681217--48681375	82	2.0	81	89	1	246	30	18	23	26	1.98
48681302--48681701	188	2.1	188	84	2	518	34	18	18	28	1.94
48681301--48681642	94	3.6	94	85	0	432	34	19	18	28	1.95
48681303--48681701	94	4.2	94	78	6	371	34	18	18	28	1.94
48682344--48682381	16	2.5	15	84	16	51	81	2	7	7	0.96
48682778--48682823	12	3.7	12	77	11	56	36	0	6	56	1.25
48683233--48683274	12	3.2	12	84	15	57	21	2	2	73	1.06
48683374--48683424	25	2.0	25	92	0	84	29	5	7	56	1.51
48686154--48686277	30	4.1	30	93	1	203	25	24	6	43	1.78
48686164--48686271	15	7.2	15	67	12	78	25	22	7	44	1.79
48690848--48690968	30	4.0	30	89	5	174	26	21	6	45	1.76
48690857--48690964	15	7.2	15	64	12	60	26	20	7	45	1.77
48694721--48694745	13	1.9	13	100	0	50	44	0	8	48	1.32
48698880--48698998	11	11.3	11	71	20	67	60	0	3	36	1.13
48698881--48698946	31	2.1	31	94	0	114	60	0	3	36	1.12
48698880--48698998	52	2.2	54	84	8	147	60	0	3	36	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48698930--48698987	28	2.0	29	90	6	91	63	0	1	34	1.04
48698941--48698974	17	2.0	17	94	0	59	67	0	0	32	0.91
48699818--48699869	24	2.2	24	82	0	59	51	5	5	36	1.50
48701791--48701842	24	2.2	24	89	0	77	53	7	3	34	1.48
48704806--48704870	31	2.1	31	88	0	94	58	1	3	36	1.23
48705810--48705932	12	9.8	12	71	11	77	26	14	8	50	1.71
48705810--48705928	25	4.8	24	74	13	89	26	14	8	51	1.70
48717127--48717154	6	4.7	6	100	0	56	17	67	14	0	1.22
48718844--48719155	158	2.0	158	91	2	511	21	25	22	31	1.98
48726181--48726219	16	2.5	16	91	4	62	25	0	0	74	0.82
48726425--48726474	22	2.1	23	82	10	57	26	6	8	60	1.48
48726652--48726684	15	2.2	15	94	0	57	24	0	12	63	1.28
48726958--48727154	98	2.0	98	94	0	349	28	10	22	38	1.87
48731650--48731690	6	6.8	6	82	17	50	90	9	0	0	0.46
48731653--48731691	8	4.8	8	87	6	60	89	10	0	0	0.48
48731650--48731696	14	3.6	13	81	18	62	89	8	0	2	0.57
48731651--48731691	17	2.3	18	87	4	66	90	9	0	0	0.46
48731652--48731696	17	2.7	16	86	10	63	88	8	0	2	0.58
48731650--48731696	11	3.9	11	86	13	58	89	8	0	2	0.57
48732815--48732872	30	1.9	30	89	0	89	41	3	24	31	1.71
48733084--48733115	13	2.5	13	94	0	55	31	0	12	56	1.37
48733210--48733451	50	4.7	50	86	4	297	26	24	29	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48733210--48733459	100	2.4	103	88	6	364	26	24	29	20	1.99
48734793--48734906	55	2.1	55	95	1	203	28	18	6	47	1.72
48735798--48735919	44	2.8	44	81	3	131	29	20	20	29	1.98
48735788--48736472	217	3.2	216	89	3	964	28	20	23	27	1.99
48735927--48736471	44	12.5	43	73	12	325	28	20	24	26	1.99
48736134--48736427	89	3.4	84	76	10	238	27	21	24	26	1.99
48737846--48737887	19	2.2	19	91	0	66	26	0	0	73	0.83
48737846--48737887	16	2.7	15	85	10	57	26	0	0	73	0.83
48738090--48738150	26	2.2	27	80	11	70	27	4	6	60	1.42
48738323--48738355	15	2.2	15	94	0	57	24	0	12	63	1.28
48738628--48738824	98	2.0	98	93	0	340	28	9	23	37	1.87
48738987--48739048	21	3.0	21	76	9	83	43	16	6	33	1.73
48741328--48741384	4	13.5	4	83	10	53	21	0	8	70	1.14
48741335--48741383	8	5.7	9	81	13	59	18	0	8	73	1.07
48743397--48743553	42	3.7	42	76	0	116	42	14	24	18	1.88
48743424--48743494	21	3.4	21	72	0	61	40	16	25	16	1.90
48746045--48746153	25	4.4	25	73	5	78	30	22	25	22	1.99
48748627--48748659	10	3.2	10	95	4	57	18	9	0	72	1.10
48749343--48749372	13	2.3	13	100	0	60	40	26	10	23	1.86
48754759--48754867	25	4.4	24	77	3	110	27	23	27	21	1.99
48754759--48754867	50	2.2	49	83	4	130	27	23	27	21	1.99
48754861--48754928	25	2.8	24	78	10	66	38	17	26	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48762169--48762228	30	2.0	30	87	6	86	51	10	6	31	1.61
48764476--48764500	11	2.3	11	100	0	50	56	8	0	36	1.29
48765242--48765285	16	2.8	17	80	13	58	4	15	9	70	1.30
48765950--48765976	13	2.1	13	100	0	54	22	22	0	55	1.44
48772815--48772883	21	3.2	22	75	8	70	56	2	0	40	1.14
48772990--48773039	26	1.9	26	95	0	91	42	2	0	56	1.11
48773004--48773041	19	2.1	19	90	5	60	39	0	0	60	0.97
48774179--48774505	48	7.0	48	82	3	310	33	17	21	27	1.96
48774548--48774894	34	10.2	34	69	11	176	39	16	14	29	1.87
48774555--48774791	68	3.5	68	76	4	210	40	16	14	29	1.88
48774639--48774864	68	3.3	68	79	6	215	40	15	15	28	1.88
48774616--48774860	102	2.4	102	80	4	253	39	15	15	28	1.89
48774708--48774894	68	2.8	68	81	4	216	39	16	13	30	1.87
48775325--48775349	13	1.9	13	100	0	50	8	36	32	24	1.84
48776962--48777014	26	2.1	26	82	10	65	28	1	3	66	1.20
48783154--48783296	50	2.9	50	72	14	123	37	19	25	18	1.94
48783206--48783262	25	2.3	25	84	6	71	35	21	22	21	1.96
48783223--48783294	25	2.9	25	83	4	74	40	19	25	15	1.90
48792991--48793017	3	9.0	3	100	0	54	33	33	0	33	1.58
48799248--48799304	20	2.8	22	85	15	79	49	5	0	45	1.24
48801573--48801602	13	2.4	12	89	10	51	30	3	23	43	1.70
48802877--48802996	37	3.2	37	68	17	102	36	5	20	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48802861--48803023	76	2.1	77	83	6	206	36	6	19	38	1.76
48803218--48803317	41	2.4	41	94	0	173	28	21	25	26	1.99
48807934--48808174	50	4.8	50	83	1	279	28	22	27	21	1.99
48808654--48809112	23	19.6	23	71	9	320	41	15	15	26	1.87
48808654--48809112	47	9.8	47	74	6	299	41	15	15	26	1.87
48808622--48808895	142	1.9	143	88	2	417	42	16	14	26	1.86
48808652--48808895	70	3.5	70	86	4	346	43	14	15	26	1.86
48808869--48809127	70	3.7	70	87	4	387	42	15	15	26	1.87
48808786--48808997	117	1.8	116	89	1	334	43	14	15	26	1.85
48809824--48809921	28	3.5	28	90	0	142	32	25	11	30	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214