genome.fa.s25.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  211  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62362303--62362344	23	1.9	23	85	9	61	38	0	9	52	1.34
62376024--62376048	10	2.5	10	100	0	50	60	0	0	40	0.97
62380174--62380229	27	2.1	27	83	6	71	23	5	7	64	1.40
62380172--62380229	26	2.2	26	85	11	75	24	5	6	63	1.40
62382428--62382485	28	2.1	28	96	0	107	32	8	17	41	1.80
62391284--62391329	6	7.7	6	90	0	65	26	17	52	4	1.63
62391284--62391337	12	4.5	12	88	0	63	24	16	53	5	1.64
62392301--62392346	24	1.9	24	95	0	83	28	13	32	26	1.93
62392315--62392534	72	3.1	72	90	0	359	30	26	23	20	1.99
62392696--62392736	6	6.8	6	97	0	64	26	34	0	39	1.57
62393861--62393900	14	2.9	13	82	10	53	20	7	32	40	1.80
62398818--62398917	50	2.0	50	86	3	139	38	12	19	31	1.88
62400104--62400134	15	2.1	15	100	0	62	32	0	35	32	1.58
62404381--62404416	16	2.2	16	90	9	56	2	8	2	86	0.77
62404378--62404414	18	2.0	19	85	15	51	2	8	2	86	0.76
62405708--62405759	2	26.0	2	100	0	104	50	0	50	0	1.00
62414273--62414318	24	2.0	24	82	4	58	36	0	21	41	1.54
62415378--62415416	16	2.4	16	91	0	60	35	0	0	64	0.94
62422899--62422981	43	1.9	43	100	0	166	44	22	4	27	1.73
62431395--62431565	58	3.1	57	82	12	230	32	15	25	26	1.96
62431446--62431564	50	2.4	50	92	1	202	31	14	26	26	1.95
62432912--62432957	18	2.5	19	82	10	60	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62436866--62436948	43	1.9	43	87	0	121	51	13	6	28	1.64
62440384--62440444	15	3.6	15	71	25	50	47	0	27	24	1.52
62440396--62440460	20	3.4	20	70	25	68	40	0	27	32	1.57
62440390--62440461	36	2.0	36	100	0	144	44	0	25	30	1.54
62443225--62443262	20	1.9	20	88	0	58	50	7	7	34	1.61
62446273--62446684	125	3.3	124	89	2	612	33	16	19	30	1.94
62449708--62449829	48	2.5	48	95	1	217	42	9	2	45	1.48
62449943--62449982	21	1.9	21	84	0	53	7	20	42	30	1.79
62452049--62452093	19	2.3	19	88	7	63	51	0	0	48	1.00
62452117--62452214	11	9.3	11	68	16	64	44	2	29	23	1.64
62452093--62452192	51	2.0	51	88	4	148	45	2	27	26	1.65
62452154--62452214	22	2.8	22	85	9	81	44	1	31	22	1.63
62452152--62452214	33	1.9	33	87	12	94	44	1	30	23	1.63
62459993--62460080	18	4.9	18	84	0	122	31	12	25	30	1.92
62459993--62460081	36	2.5	36	92	0	142	31	12	24	31	1.92
62473933--62474291	52	7.1	51	85	8	477	34	14	22	28	1.93
62473919--62474280	98	3.6	98	94	2	598	34	14	22	28	1.94
62473925--62474328	150	2.8	144	83	10	511	35	14	22	27	1.93
62474255--62474400	37	4.0	37	91	1	242	36	15	22	25	1.94
62476149--62476191	23	1.9	22	85	4	59	53	0	6	39	1.28
62481516--62481545	12	2.5	12	94	0	51	40	13	26	20	1.89
62482556--62482599	22	2.0	23	86	8	65	54	4	2	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62484302--62484330	14	2.0	15	93	6	51	75	0	3	20	0.94
62490441--62490484	21	2.2	21	92	8	74	31	0	0	68	0.90
62494088--62494141	29	1.9	28	85	7	74	24	14	7	53	1.66
62494150--62494213	29	2.2	29	100	0	128	46	12	7	32	1.70
62495186--62495219	15	2.3	15	84	0	50	0	50	38	11	1.39
62495221--62495272	21	2.4	22	84	12	72	61	3	0	34	1.14
62513784--62513876	18	5.2	18	88	0	132	33	16	22	27	1.95
62513784--62513876	36	2.6	36	89	0	150	33	16	22	27	1.95
62517353--62517530	89	2.0	89	91	0	284	36	8	14	41	1.76
62518294--62518365	5	14.8	5	74	21	64	38	1	4	55	1.28
62518323--62518365	19	2.3	19	92	8	70	41	2	0	55	1.12
62518375--62518408	17	2.0	17	94	0	59	79	0	17	2	0.86
62518375--62518408	9	3.9	9	84	7	52	79	0	17	2	0.86
62519373--62519495	44	2.7	45	82	5	140	33	14	23	28	1.94
62522057--62522095	17	2.3	17	86	0	51	2	20	7	69	1.26
62522112--62522146	17	2.0	18	94	5	63	0	57	0	42	0.99
62525045--62525086	18	2.4	18	80	4	50	59	0	2	38	1.10
62525193--62525231	20	2.0	20	89	0	60	48	12	10	28	1.74
62525473--62525526	18	3.0	16	86	13	54	38	1	1	57	1.20
62525488--62525526	18	2.2	17	95	4	69	41	0	0	58	0.98
62525680--62525734	21	2.6	21	85	8	76	27	38	7	27	1.83
62525819--62525846	13	2.2	13	100	0	56	21	7	25	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62527724--62527795	5	14.8	5	74	21	64	38	1	4	55	1.28
62527753--62527795	19	2.3	19	92	8	70	41	2	0	55	1.12
62527805--62527838	17	2.0	17	94	0	59	79	0	17	2	0.86
62527805--62527838	9	3.9	9	84	7	52	79	0	17	2	0.86
62528803--62528925	44	2.7	45	82	5	140	33	14	23	28	1.94
62535107--62535148	18	2.3	18	95	0	75	50	4	2	42	1.36
62537468--62537518	19	2.8	18	79	11	59	60	9	3	25	1.45
62537827--62537875	10	4.8	10	80	11	55	44	0	6	48	1.27
62537827--62537875	22	2.4	19	86	10	62	44	0	6	48	1.27
62537989--62538029	20	2.0	20	85	0	55	31	2	2	63	1.20
62539977--62540001	4	6.2	4	100	0	50	28	48	0	24	1.52
62550025--62550052	3	9.3	3	100	0	56	0	32	0	67	0.91
62557162--62557650	249	2.0	249	98	0	942	29	19	13	36	1.90
62565865--62565919	27	2.0	27	82	0	65	36	16	10	36	1.84
62579465--62579500	19	1.9	19	88	5	56	50	22	8	19	1.74
62587601--62587634	13	2.5	14	90	4	52	61	0	0	38	0.96
62588721--62588769	21	2.3	21	89	10	73	69	2	0	28	1.00
62590551--62590575	8	3.1	8	100	0	50	12	24	12	52	1.72
62595797--62595848	26	2.1	26	85	7	72	40	1	3	53	1.30
62599539--62599592	15	3.7	15	80	5	65	53	9	1	35	1.44
62605457--62605670	106	2.0	106	100	0	428	45	1	17	34	1.60
62614636--62614682	3	15.7	3	100	0	94	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62616606--62616641	18	2.0	18	94	0	63	69	5	0	25	1.10
62620646--62620685	19	2.1	19	86	9	55	22	17	12	47	1.81
62629368--62629406	14	2.7	15	88	8	62	41	0	0	58	0.98
62631626--62631672	23	2.0	23	87	0	67	63	4	0	31	1.13
62631648--62631882	19	12.6	19	65	20	68	58	2	1	37	1.20
62631612--62631877	28	9.7	27	68	19	87	59	3	0	36	1.18
62631612--62631914	10	31.9	9	67	17	109	59	3	1	35	1.22
62631612--62631800	9	19.8	10	70	20	72	62	2	0	34	1.13
62632971--62633230	134	1.9	134	89	0	403	35	15	13	35	1.86
62633744--62633816	9	7.9	9	73	11	58	38	0	5	56	1.23
62633783--62633829	18	2.7	17	78	15	51	27	4	8	59	1.45
62633741--62633816	19	4.2	17	70	20	64	39	0	5	55	1.23
62637989--62638079	37	2.5	37	92	0	155	26	30	21	20	1.98
62639046--62639088	22	2.0	21	90	4	68	27	6	0	65	1.18
62639050--62639094	22	2.0	22	86	0	63	31	6	0	62	1.21
62650000--62650041	22	2.0	21	85	4	57	26	4	14	54	1.59
62659124--62659158	3	11.7	3	88	11	54	65	0	34	0	0.93
62663763--62663812	21	2.4	21	80	6	57	70	10	2	18	1.25
62665007--62665031	13	1.9	13	100	0	50	48	8	24	20	1.76
62666126--62666251	30	4.0	29	74	21	110	65	0	0	34	0.99
62666163--62666283	9	12.6	9	67	19	50	66	0	2	31	1.05
62666130--62666223	38	2.5	36	81	11	116	64	0	1	34	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62666152--62666283	39	3.6	39	76	19	167	65	0	2	32	1.05
62666152--62666286	38	3.7	38	79	16	169	65	0	2	31	1.04
62666139--62666286	68	2.2	66	92	3	242	66	0	2	31	1.03
62669659--62669702	22	2.0	22	82	8	54	45	2	6	45	1.42
62673985--62674035	15	3.2	15	78	16	50	19	1	3	74	1.07
62677090--62677205	46	2.6	46	90	4	184	26	24	16	32	1.96
62678863--62678912	3	17.3	3	79	8	59	66	4	0	30	1.10
62678863--62678909	18	2.7	18	87	6	71	65	4	0	29	1.11
62690315--62690379	25	2.5	26	80	9	80	67	6	3	23	1.27
62690406--62690537	27	5.0	27	73	7	112	59	0	6	33	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214