genome.fa.s25.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  138  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41814973--41815248	134	2.1	134	94	1	482	29	22	19	27	1.98
41814773--41815205	229	1.9	229	94	0	758	28	22	20	27	1.99
41815272--41815405	42	3.1	42	62	19	105	23	23	26	26	2.00
41815196--41815459	86	3.1	86	92	0	420	26	24	22	26	2.00
41819564--41819607	19	2.3	20	84	7	56	40	11	20	27	1.86
41821651--41821677	14	1.9	14	100	0	54	74	0	3	22	0.98
41825291--41825328	19	2.0	19	94	0	67	47	7	5	39	1.55
41826680--41826731	26	2.0	26	81	7	61	46	0	3	50	1.20
41826799--41826863	27	2.4	27	97	0	121	27	23	33	15	1.95
41827099--41827124	12	2.2	12	100	0	52	38	0	15	46	1.46
41827255--41827466	27	8.7	25	83	13	236	31	0	14	53	1.47
41827224--41827511	49	6.0	48	78	17	232	31	1	14	52	1.49
41827354--41827492	8	16.4	8	65	19	59	33	1	15	49	1.53
41827191--41827445	19	13.5	19	72	18	169	31	1	13	53	1.47
41827296--41827466	75	2.3	76	97	1	326	32	1	14	52	1.49
41827296--41827511	75	2.9	74	91	5	294	31	1	15	51	1.52
41827659--41827779	38	3.2	38	97	1	224	55	4	2	38	1.32
41829020--41829079	22	2.7	23	82	10	79	1	31	3	63	1.20
41831021--41831256	101	2.4	97	84	6	275	36	16	18	27	1.93
41831161--41831725	111	4.9	112	83	10	685	32	15	16	35	1.90
41831348--41831715	117	3.0	124	87	6	486	30	16	17	35	1.91
41831761--41832147	109	3.6	107	90	4	577	29	16	14	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41834686--41834724	11	3.5	11	82	6	51	74	2	2	20	1.06
41834698--41834733	17	2.2	17	90	5	56	77	2	0	19	0.88
41836184--41836658	89	5.3	88	71	11	320	30	20	17	32	1.95
41836178--41836661	45	10.8	44	74	9	352	29	20	17	33	1.95
41846531--41846570	21	2.0	20	85	5	53	62	0	15	22	1.32
41855453--41855536	26	3.2	26	84	0	114	17	25	22	34	1.96
41855577--41855631	24	2.3	24	83	0	65	14	27	25	32	1.95
41858688--41858784	13	6.8	13	70	23	54	31	6	4	57	1.42
41858688--41858794	3	34.0	3	75	14	65	33	5	3	57	1.40
41859155--41859673	125	4.2	125	89	0	772	29	16	21	31	1.96
41860215--41860246	16	2.0	16	100	0	64	31	50	6	12	1.65
41861689--41863324	21	76.2	21	82	8	1608	25	0	27	46	1.53
41861689--41863324	63	25.4	63	83	7	1819	25	0	27	46	1.53
41862342--41862402	27	2.2	27	94	2	104	21	0	27	50	1.49
41863158--41863209	27	1.9	27	88	7	79	21	0	32	46	1.52
41863315--41863393	38	2.1	38	97	0	149	11	0	32	55	1.35
41863392--41863430	19	2.2	19	86	9	55	46	0	0	53	1.00
41864624--41864649	7	3.7	7	100	0	52	57	15	0	26	1.38
41864817--41864855	20	2.0	20	85	10	53	53	7	2	35	1.43
41865844--41865886	11	3.8	12	80	20	56	39	0	32	27	1.57
41866016--41866115	42	2.4	41	76	3	103	17	30	30	23	1.96
41866317--41866381	34	1.9	33	84	12	87	41	9	0	49	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41866311--41866377	18	3.8	18	70	20	61	43	8	0	47	1.34
41866366--41866501	53	2.6	53	81	6	134	34	7	1	56	1.36
41866449--41866478	12	2.5	12	94	0	51	50	10	0	40	1.36
41866874--41867240	189	1.9	188	87	1	538	29	18	16	36	1.92
41869578--41869620	17	2.5	17	77	7	52	76	2	2	18	1.00
41875820--41875854	14	2.5	15	86	13	56	31	11	0	57	1.34
41875828--41875853	7	3.7	7	100	0	52	26	11	0	61	1.30
41876647--41876705	29	2.1	29	87	3	84	45	13	18	22	1.84
41879302--41879341	20	2.0	20	90	0	62	50	12	10	27	1.72
41879290--41879356	34	1.9	35	90	3	109	46	13	8	31	1.74
41881353--41881715	104	3.5	104	81	1	404	34	15	19	30	1.93
41888278--41888324	17	2.9	16	81	12	51	2	23	51	23	1.59
41888458--41888526	9	8.2	9	77	18	60	0	24	0	75	0.81
41888493--41888529	3	12.7	3	83	16	51	0	27	0	72	0.84
41888459--41888526	8	8.2	8	80	16	61	0	25	0	75	0.81
41888461--41888532	20	3.7	21	77	17	75	0	26	0	73	0.83
41888459--41888530	15	4.9	16	79	16	68	0	25	0	75	0.81
41888601--41888678	28	2.8	29	83	11	101	0	32	0	67	0.90
41888617--41888670	16	3.6	16	82	7	60	0	29	0	70	0.88
41888590--41888673	35	2.4	34	79	11	91	0	30	1	67	0.98
41888854--41888905	26	2.0	26	84	0	68	5	17	55	21	1.62
41889154--41889238	28	3.0	29	81	10	86	49	4	15	30	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41889185--41889238	28	1.9	28	92	0	90	50	0	14	35	1.44
41890678--41890702	12	2.1	12	100	0	50	68	0	8	24	1.16
41891221--41891260	12	3.1	12	89	10	53	70	7	12	10	1.35
41896437--41896478	17	2.6	17	85	14	54	21	7	2	69	1.25
41908578--41908708	44	3.0	44	77	0	118	29	16	22	30	1.96
41908700--41908845	44	3.2	44	69	19	127	32	20	21	26	1.98
41908663--41908874	94	2.3	94	85	4	277	32	19	19	27	1.97
41908705--41908879	50	3.6	50	69	14	150	32	21	19	26	1.97
41908902--41909060	44	3.6	44	81	1	167	32	23	18	26	1.97
41912310--41912463	63	2.4	63	92	0	245	18	19	25	36	1.95
41912310--41912501	63	3.0	61	83	7	206	21	19	24	34	1.96
41913120--41913167	15	3.0	17	74	20	50	39	0	22	37	1.55
41922236--41922274	17	2.3	17	95	0	69	41	12	7	38	1.72
41923509--41923945	44	9.9	44	90	3	691	32	11	21	34	1.89
41924785--41924822	20	1.9	20	88	0	58	5	18	5	71	1.25
41925174--41925208	3	11.7	3	93	0	61	31	2	0	65	1.07
41927164--41927638	104	4.6	104	82	7	509	35	16	19	28	1.94
41927155--41927638	208	2.3	208	83	3	573	35	16	19	28	1.93
41927472--41927689	55	4.1	55	71	10	211	41	14	19	24	1.88
41927376--41927640	102	2.6	102	90	3	343	38	16	20	24	1.93
41931892--41931934	3	14.3	3	90	0	68	62	0	4	32	1.15
41934878--41934912	14	2.5	14	100	0	70	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41934896--41934932	18	2.0	19	94	5	67	40	0	0	59	0.97
41934872--41934912	14	3.2	13	87	12	59	39	0	0	60	0.96
41941648--41941712	32	2.0	32	93	0	112	40	12	13	33	1.82
41941677--41941769	45	2.1	45	95	0	168	35	17	15	32	1.91
41946618--41946669	16	3.2	16	86	0	68	42	1	21	34	1.64
41946600--41946669	32	2.2	32	84	0	86	42	2	21	32	1.67
41946651--41946756	44	2.5	40	73	19	99	33	3	25	37	1.74
41946847--41946972	58	2.2	58	89	2	191	53	2	0	44	1.13
41946834--41947000	58	2.9	56	83	8	178	53	2	1	41	1.24
41950905--41950996	47	2.0	47	97	0	175	48	6	4	40	1.49
41955424--41955479	23	2.3	24	79	17	62	39	0	10	50	1.37
41957816--41957849	17	1.9	18	94	5	61	52	0	0	47	1.00
41959684--41959780	45	2.1	45	81	5	106	22	13	19	44	1.86
41960902--41960939	19	2.1	18	90	5	58	47	2	5	44	1.39
41961002--41961041	3	13.3	3	94	0	71	65	2	0	32	1.06
41961777--41961813	5	7.6	5	82	17	51	78	0	2	18	0.87
41962587--41962916	49	6.9	49	65	14	161	20	20	26	32	1.97
41962449--41962916	96	4.9	95	85	4	541	21	21	24	32	1.98
41973887--41973953	35	1.9	34	87	3	98	73	4	0	22	1.01
41973905--41973943	20	2.0	20	85	10	53	74	5	0	20	1.01
41973900--41973959	9	6.8	9	73	3	59	81	3	0	15	0.81
41973934--41973962	10	3.0	10	95	5	51	89	0	0	10	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41974071--41974105	11	3.2	11	88	11	54	0	54	0	45	0.99
41974571--41974638	3	22.3	3	73	8	57	30	0	7	61	1.23
41974578--41974649	23	3.1	23	82	11	67	31	1	11	55	1.43
41974739--41974777	3	13.0	3	88	0	60	30	2	0	66	1.05
41975025--41975102	17	4.3	18	76	13	72	33	3	2	60	1.28
41975456--41975551	18	5.1	19	67	20	58	36	11	1	51	1.45
41975457--41975551	38	2.6	36	78	8	93	36	11	1	50	1.46
41987872--41988333	133	3.5	134	78	7	416	30	20	22	26	1.98
41987827--41988334	44	11.6	44	75	9	355	31	20	21	26	1.98
41989246--41989311	34	1.9	34	87	6	98	72	4	0	22	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214