genome.fa.s25.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  174  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51121240--51121280	9	4.7	9	84	6	57	2	4	7	85	0.81
51121239--51121271	17	1.9	17	100	0	66	3	6	6	84	0.84
51121237--51121282	9	5.0	9	81	5	56	2	4	8	84	0.83
51121281--51121339	27	2.2	26	85	8	82	54	0	5	40	1.23
51121742--51121793	20	2.5	21	79	14	63	40	0	5	53	1.25
51122498--51122559	27	2.2	28	85	5	90	24	24	6	45	1.76
51133638--51133705	22	3.1	22	72	8	66	60	14	10	14	1.59
51134892--51135006	61	1.9	61	85	0	158	37	6	15	40	1.75
51136277--51136329	23	2.3	23	93	0	97	32	26	20	20	1.98
51141764--51142017	21	11.3	22	66	22	102	31	1	11	54	1.48
51141764--51141833	20	3.4	20	84	5	86	30	2	8	58	1.42
51141719--51141934	103	2.0	107	83	8	273	32	1	11	54	1.47
51141866--51141961	27	3.8	25	78	16	110	33	1	12	53	1.46
51142155--51142235	37	2.2	37	95	2	144	55	2	2	39	1.26
51145393--51145434	21	2.0	22	90	4	68	0	28	2	69	1.01
51145395--51145444	18	2.6	18	84	9	55	2	28	2	68	1.12
51145521--51145584	27	2.4	27	78	0	74	26	32	25	15	1.95
51146230--51146341	56	2.0	56	100	0	224	19	21	19	39	1.93
51147313--51147358	17	2.8	17	75	18	53	47	0	0	52	1.00
51151530--51151580	21	2.4	21	87	6	68	60	1	1	35	1.19
51154333--51154427	39	2.4	39	96	0	172	4	20	38	36	1.72
51154387--51154478	24	3.7	24	78	8	94	6	18	42	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51155885--51155970	19	4.5	19	68	18	54	46	1	0	52	1.08
51162943--51163131	39	4.8	38	70	15	118	33	4	12	49	1.60
51165946--51166001	8	7.1	8	79	4	69	26	1	23	48	1.61
51168151--51168450	157	1.9	156	87	6	441	32	10	8	48	1.68
51168401--51168618	120	1.8	119	88	3	330	33	8	5	51	1.57
51168501--51168999	152	3.3	151	79	9	600	30	10	6	52	1.61
51168219--51168769	272	2.0	273	89	3	851	32	10	6	50	1.63
51169328--51169377	19	2.6	19	75	15	57	0	38	0	62	0.96
51169354--51169400	14	3.3	14	81	3	58	0	34	0	65	0.93
51169533--51169607	5	15.4	5	71	18	52	62	0	36	1	1.04
51169529--51169590	10	5.6	11	75	21	58	59	0	38	1	1.07
51169548--51169618	20	3.5	20	84	5	90	66	0	32	1	1.01
51169533--51169607	24	3.3	24	75	17	79	62	0	36	1	1.04
51169942--51170795	154	5.6	151	80	11	944	52	7	10	29	1.62
51170404--51170800	138	2.8	140	80	14	400	51	6	12	29	1.64
51169950--51170800	305	2.9	294	87	6	1230	52	7	10	29	1.63
51174148--51174317	43	4.0	42	78	14	188	22	18	28	31	1.97
51174160--51174317	84	1.9	84	84	10	216	22	18	28	30	1.98
51174477--51174508	16	1.9	17	93	6	57	40	0	21	37	1.54
51177115--51177316	39	5.3	38	69	14	155	50	10	4	34	1.57
51177115--51177316	37	5.3	38	70	18	125	50	10	4	34	1.57
51177188--51177234	23	2.0	23	84	8	60	59	14	2	23	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51177899--51177950	21	2.4	22	84	12	63	71	15	5	7	1.29
51177903--51177950	24	2.0	24	88	4	71	70	16	6	6	1.28
51180396--51180449	16	3.4	16	75	7	56	51	0	0	48	1.00
51180397--51180457	30	1.9	32	87	9	90	50	0	0	49	1.00
51180385--51180457	30	2.4	31	80	14	89	47	1	0	50	1.09
51180417--51180460	22	2.0	22	86	4	61	50	0	0	50	1.00
51181086--51181128	18	2.2	20	88	8	63	39	0	0	60	0.97
51181181--51181228	14	3.9	13	74	23	50	47	0	0	52	1.00
51181174--51181231	23	2.5	23	86	8	73	44	0	0	55	0.99
51181206--51181239	15	2.3	15	90	5	52	38	0	0	61	0.96
51181261--51181311	22	2.3	23	89	3	77	50	0	0	49	1.00
51181333--51181374	21	2.0	22	90	4	68	50	0	0	50	1.00
51181333--51181381	21	2.3	21	85	3	62	48	2	2	46	1.25
51181401--51181450	22	2.3	22	86	6	66	58	2	0	40	1.10
51181446--51181490	24	1.9	23	86	4	63	80	4	6	8	1.03
51195833--51195865	11	2.8	12	81	9	50	69	0	0	30	0.88
51197088--51197181	44	2.1	44	90	0	143	30	10	19	39	1.85
51199056--51199112	14	4.2	13	75	20	55	40	26	7	26	1.81
51199338--51199419	43	1.9	43	85	9	114	31	29	19	19	1.96
51205234--51205290	28	2.2	26	81	15	64	28	8	3	59	1.44
51207434--51207465	6	5.3	6	100	0	64	15	50	0	34	1.45
51210024--51210067	21	2.1	21	95	0	79	25	27	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51220074--51220099	9	2.9	9	100	0	52	69	0	19	11	1.18
51238632--51238693	11	5.6	11	78	3	63	24	32	1	41	1.64
51238630--51238705	22	3.4	22	79	16	86	25	30	1	43	1.63
51238670--51238766	51	1.9	51	82	4	124	25	25	4	44	1.72
51239997--51240032	16	2.2	17	90	5	56	33	0	0	66	0.92
51240979--51241003	12	2.1	12	100	0	50	48	16	24	12	1.79
51247812--51247844	6	5.7	6	92	3	50	18	3	0	78	0.87
51257431--51257465	19	1.9	18	88	11	54	51	2	0	45	1.16
51257435--51257473	18	2.2	18	86	9	53	51	2	0	46	1.14
51263636--51263673	19	2.1	19	85	5	51	57	15	2	23	1.51
51265289--51265324	18	2.0	18	94	0	63	22	19	11	47	1.80
51274413--51274439	13	2.1	13	100	0	54	22	0	7	70	1.12
51274754--51274797	23	1.9	23	86	9	63	36	2	0	61	1.09
51283079--51283126	21	2.2	22	85	3	62	58	6	6	29	1.47
51283182--51283396	112	1.9	112	93	1	369	50	8	6	33	1.60
51286544--51286913	184	2.1	174	82	6	436	34	18	22	24	1.96
51287618--51287672	22	2.5	22	96	0	101	50	9	30	9	1.65
51289197--51289231	18	1.9	18	88	0	52	48	17	8	25	1.75
51289591--51289621	16	1.9	16	100	0	62	22	32	0	45	1.53
51289608--51289653	20	2.2	21	85	11	60	17	34	0	47	1.48
51304031--51304091	31	2.0	31	87	6	88	47	8	8	36	1.63
51304863--51304904	22	1.9	22	90	0	66	38	0	26	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51308335--51308365	10	3.1	10	100	0	62	22	0	0	77	0.77
51308746--51308774	6	4.8	6	100	0	58	34	0	0	65	0.93
51311280--51311346	32	2.1	32	91	0	107	19	28	38	13	1.89
51323865--51323910	16	2.9	16	83	0	56	17	2	8	71	1.21
51323863--51323911	20	2.5	20	80	6	64	16	4	10	69	1.32
51324463--51324684	107	2.1	106	88	3	322	31	18	16	33	1.93
51328106--51328160	20	2.7	20	71	20	51	47	0	5	47	1.25
51328963--51329246	153	1.9	149	82	5	356	44	12	11	31	1.78
51329423--51329448	6	4.3	6	100	0	52	15	50	34	0	1.45
51335278--51335352	28	2.7	27	79	4	78	58	2	1	37	1.20
51345878--51345909	14	2.3	14	100	0	64	31	46	15	6	1.71
51351001--51351032	14	2.3	14	100	0	64	31	46	15	6	1.71
51356513--51356680	40	4.2	40	82	8	148	27	27	20	24	1.99
51356550--51356680	40	3.3	40	89	2	201	28	27	20	23	1.99
51356513--51356733	80	2.8	80	78	11	220	27	26	21	24	1.99
51364457--51364624	40	4.2	40	82	8	148	27	27	20	24	1.99
51364494--51364624	40	3.3	40	89	2	201	28	27	20	23	1.99
51364457--51364677	80	2.8	80	78	11	220	27	26	21	24	1.99
51377926--51378039	7	16.1	7	77	16	94	78	0	1	20	0.85
51377869--51378040	6	27.8	6	72	14	61	75	0	3	20	1.00
51377848--51378039	33	6.1	30	70	20	117	75	1	3	19	1.04
51381739--51381784	5	9.2	5	85	0	65	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51381734--51381771	20	1.9	19	94	5	67	52	2	0	44	1.14
51383485--51383575	23	4.0	23	88	0	137	31	25	21	20	1.98
51383484--51383574	46	2.0	46	93	0	155	30	25	21	21	1.99
51399844--51399889	24	1.9	24	86	0	65	10	26	17	45	1.81
51405481--51405659	88	2.0	88	91	2	288	45	12	13	27	1.80
51414270--51414551	125	2.3	125	87	4	399	31	15	21	31	1.94
51417747--51418805	29	36.4	29	86	3	1398	33	1	21	43	1.62
51419084--51419139	24	2.3	24	96	0	103	19	17	33	28	1.95
51419991--51420022	7	4.6	7	100	0	64	59	12	0	28	1.34
51420978--51421011	15	2.3	15	90	5	52	67	5	0	26	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214