genome.fa.s25.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  93  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26749414--26749491	38	2.1	38	97	0	147	24	16	25	33	1.96
26751808--26751877	30	2.3	30	92	0	122	18	32	32	15	1.93
26753409--26753447	20	2.0	20	100	0	78	30	10	20	38	1.86
26759596--26759775	39	4.6	39	89	0	261	32	2	20	45	1.63
26763051--26763116	21	2.9	24	70	21	68	30	12	12	45	1.78
26763311--26763356	10	4.9	9	86	7	65	56	19	0	23	1.42
26763311--26763356	19	2.4	19	85	7	67	56	19	0	23	1.42
26763459--26763497	19	2.1	19	95	0	69	51	10	10	28	1.68
26763478--26763551	35	2.1	35	92	0	121	40	16	9	33	1.80
26763629--26763669	20	2.0	21	85	4	57	39	14	14	31	1.87
26772060--26772113	25	2.2	25	83	12	67	55	0	3	40	1.17
26772117--26772177	30	2.2	26	80	13	70	49	9	9	31	1.69
26776530--26776701	49	3.5	49	74	12	181	23	18	20	36	1.95
26776516--26776899	50	7.6	49	76	8	242	22	25	22	29	1.99
26776516--26776737	99	2.2	99	97	0	417	23	22	20	33	1.97
26779996--26780171	56	3.1	56	97	0	325	45	9	22	22	1.81
26781299--26781523	40	5.7	40	85	5	287	24	21	28	25	1.99
26781299--26781556	119	2.2	119	81	6	283	25	21	27	25	1.99
26787413--26787760	150	2.3	154	81	6	388	22	28	22	26	1.99
26787414--26787760	50	6.8	50	81	5	342	22	28	22	26	1.99
26788097--26788154	30	1.9	30	85	0	80	31	22	6	39	1.80
26798382--26798442	23	2.7	23	97	0	113	11	8	22	57	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26798409--26798475	35	1.9	35	96	0	125	13	8	19	58	1.61
26798384--26798456	12	6.2	12	70	17	64	10	8	23	57	1.59
26799414--26799440	11	2.5	11	100	0	54	29	0	0	70	0.88
26799533--26799571	16	2.5	16	87	4	53	25	5	0	69	1.09
26799666--26799698	16	2.1	16	100	0	66	24	0	0	75	0.80
26799300--26799929	131	5.0	127	90	5	986	44	5	3	47	1.41
26799796--26799829	16	2.1	16	100	0	68	23	0	0	76	0.79
26799300--26799929	258	2.5	253	92	2	1014	44	5	3	47	1.41
26801559--26801630	30	2.4	30	85	0	90	27	34	8	29	1.86
26803729--26803833	49	2.1	49	91	0	165	29	8	10	51	1.66
26805212--26805522	120	2.6	120	95	2	563	42	2	3	51	1.32
26805423--26805538	17	7.0	17	67	16	64	39	1	2	56	1.23
26805358--26805538	41	4.5	39	66	20	104	41	2	3	52	1.32
26805504--26805538	18	2.0	17	88	5	52	42	2	0	54	1.15
26805324--26805377	26	2.1	26	79	3	65	40	1	1	55	1.21
26805696--26805803	46	2.4	44	84	3	126	38	27	5	27	1.79
26817861--26817897	17	2.2	17	90	0	56	27	13	8	51	1.69
26821644--26821711	35	1.9	35	91	5	111	19	19	19	42	1.89
26822357--26822447	29	3.1	29	95	0	155	37	15	27	19	1.92
26826224--26826408	51	3.6	51	75	3	151	23	16	27	33	1.95
26826412--26826506	45	2.1	45	86	0	136	25	16	24	33	1.96
26831642--26831761	25	4.8	25	85	4	136	24	21	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26835012--26835157	43	3.4	43	73	10	147	36	22	16	23	1.94
26834967--26835203	84	2.8	84	82	6	284	35	23	16	25	1.95
26834969--26835198	42	5.5	42	72	14	170	36	22	16	25	1.94
26841036--26841122	25	3.5	25	76	9	88	27	18	19	34	1.95
26859279--26859696	136	3.1	135	90	3	642	40	8	6	45	1.59
26859758--26859790	17	1.9	17	93	0	57	45	9	0	45	1.35
26862469--26862653	40	4.6	39	83	5	203	24	22	27	24	2.00
26862469--26862653	79	2.3	81	83	7	227	24	22	27	24	2.00
26862470--26862686	79	2.7	79	79	7	183	26	22	27	24	2.00
26870405--26870589	40	4.7	40	78	6	189	26	22	25	25	2.00
26872340--26872825	46	10.6	46	90	3	705	22	23	14	39	1.90
26886661--26886801	72	2.0	72	97	0	264	36	14	21	27	1.92
26889067--26889091	12	2.1	12	100	0	50	8	16	40	36	1.77
26889947--26889976	16	1.9	16	93	6	53	50	20	0	30	1.49
26892636--26893289	325	2.0	325	97	0	1227	24	25	12	37	1.90
26893284--26893397	45	2.5	45	88	0	156	21	20	14	42	1.88
26898536--26898565	14	2.2	14	94	5	53	66	0	13	20	1.24
26899436--26899648	25	8.6	25	74	8	175	16	27	19	36	1.94
26899458--26899648	74	2.6	74	80	2	195	16	27	19	36	1.94
26899450--26899625	49	3.6	50	76	12	143	16	26	19	36	1.93
26899557--26899682	49	2.5	50	81	6	132	19	24	19	36	1.95
26900981--26901020	20	2.0	21	90	5	64	30	7	15	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26914803--26914896	47	2.0	47	97	0	179	32	11	12	42	1.79
26918034--26918094	30	2.0	30	96	0	113	52	9	14	22	1.71
26920144--26920522	50	7.5	50	84	3	233	24	29	19	27	1.98
26920180--26920519	50	6.7	50	84	3	385	23	30	19	26	1.98
26924444--26924476	10	3.3	10	91	0	57	33	30	0	36	1.58
26924476--26924605	43	3.0	42	79	4	145	33	14	22	29	1.94
26932134--26932311	27	6.6	27	84	7	209	30	28	14	26	1.95
26932155--26932309	82	1.9	80	88	6	231	30	27	14	27	1.95
26940454--26940750	29	10.2	29	85	0	396	36	12	28	23	1.91
26940454--26940748	58	5.1	58	91	0	446	36	12	28	23	1.91
26952772--26952948	27	6.5	27	81	3	169	26	15	27	29	1.96
26952772--26952927	82	1.9	81	85	3	215	27	16	26	29	1.96
26952764--26952948	82	2.3	81	78	2	210	27	15	27	30	1.96
26956965--26957149	101	1.8	102	87	3	275	23	17	26	32	1.97
26956961--26957147	51	3.7	50	73	4	178	24	17	26	32	1.97
26957153--26957247	45	2.1	45	92	0	154	27	18	23	30	1.98
26963016--26963110	45	2.1	45	94	0	163	28	18	22	30	1.97
26967269--26967323	23	2.4	23	96	0	101	30	12	25	30	1.93
26971165--26971232	33	2.1	33	86	5	93	10	25	5	58	1.53
26971206--26971253	18	2.6	19	84	12	57	8	27	4	60	1.44
26976157--26976481	29	11.2	29	82	0	380	36	14	27	22	1.92
26976152--26976473	116	2.8	116	92	0	509	36	14	27	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26982450--26982704	43	6.0	43	74	13	217	35	23	16	23	1.95
26982457--26982744	42	6.8	41	75	11	242	35	24	17	23	1.95
26982457--26982744	85	3.4	85	87	0	407	35	24	17	23	1.95
26982719--26982770	26	2.0	26	100	0	104	30	30	19	19	1.96
26990066--26990290	42	5.3	42	74	10	181	35	24	16	23	1.95
26990056--26990292	85	2.8	85	86	0	305	34	24	17	24	1.96
26990270--26990344	26	2.9	26	98	2	143	30	34	18	16	1.93
26995156--26995246	48	1.9	47	86	6	130	37	24	16	21	1.94
26995217--26995268	21	2.4	22	84	9	63	44	25	9	21	1.82
26996136--26996195	30	2.0	30	93	0	102	55	16	6	21	1.64
27003276--27003320	21	2.0	22	83	8	56	73	4	15	6	1.21
27008039--27008108	35	2.0	35	94	0	122	27	15	11	45	1.80
27011389--27011583	50	3.9	50	79	4	180	23	26	22	28	1.99
27014542--27014575	16	2.3	15	90	10	52	29	20	5	44	1.75
27018896--27018932	18	2.0	19	89	5	58	75	2	16	5	1.10
27026916--27027068	50	2.9	50	84	5	180	25	18	30	24	1.98
27027343--27027381	20	2.0	20	90	10	62	56	5	23	15	1.59
27028916--27028980	25	2.6	25	90	0	94	29	20	23	27	1.98
27050332--27050385	22	2.5	21	82	14	65	29	3	0	66	1.09
27050339--27050385	23	2.1	22	88	11	69	31	4	0	63	1.13
27050332--27050390	23	2.8	21	78	16	59	30	3	0	66	1.08
27052802--27052978	50	3.5	51	71	8	164	24	19	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27053116--27053580	44	10.1	44	69	14	177	26	20	20	32	1.97
27053055--27053483	142	3.0	142	90	0	687	27	20	19	32	1.97
27053390--27053592	88	2.3	88	93	2	338	25	22	22	30	1.99
27088746--27088784	20	2.0	20	84	0	51	17	0	35	46	1.49
27099023--27099057	15	2.3	15	90	0	52	28	8	0	62	1.24
27115711--27115911	51	4.0	51	78	5	228	30	27	16	24	1.97
27115711--27115906	102	1.9	102	84	3	261	31	27	17	24	1.97
27115711--27115941	101	2.3	102	78	6	247	30	27	16	25	1.97
27122763--27122801	12	3.2	12	85	0	51	20	23	5	51	1.67
27123070--27123239	50	3.4	50	89	4	254	20	28	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214