genome.fa.s25.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  144  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43277092--43277126	18	2.0	17	88	5	52	54	0	0	45	0.99
43276955--43278063	120	9.2	120	97	0	1927	48	4	2	44	1.36
43277212--43277246	18	2.0	17	88	5	52	54	0	0	45	0.99
43277332--43277366	18	2.0	17	88	5	52	54	0	0	45	0.99
43277452--43277486	18	2.0	17	88	5	52	54	0	0	45	0.99
43277692--43277726	18	2.0	17	88	5	52	54	0	0	45	0.99
43277930--43277966	16	2.2	17	86	13	51	54	0	2	43	1.14
43282280--43282304	11	2.3	11	100	0	50	72	0	0	28	0.86
43282407--43282463	14	4.1	14	81	6	71	70	5	3	21	1.22
43288057--43288115	31	1.9	31	89	0	91	30	10	11	47	1.73
43291916--43291951	16	2.2	16	100	0	72	25	33	0	41	1.55
43293135--43293742	125	4.8	126	85	5	748	29	15	23	31	1.95
43296950--43297858	22	42.0	22	79	5	933	25	0	29	44	1.58
43296949--43297861	65	14.1	64	85	4	940	25	0	30	44	1.58
43297270--43297304	15	2.3	15	85	0	52	17	0	40	42	1.49
43298132--43298171	21	1.9	21	85	10	55	12	20	37	30	1.89
43298434--43298473	18	2.2	18	90	0	62	42	7	30	20	1.79
43301948--43301983	4	9.0	4	100	0	72	50	25	0	25	1.50
43303167--43303202	18	2.0	19	89	10	58	30	0	0	69	0.89
43305489--43305761	131	2.1	131	93	0	465	34	13	13	38	1.84
43307564--43307968	137	3.0	136	87	2	548	27	20	19	32	1.97
43307905--43308084	89	2.0	87	84	4	227	28	22	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43307433--43308143	44	15.8	44	69	13	347	27	20	19	31	1.97
43309020--43309062	9	5.0	9	84	15	56	11	6	0	81	0.87
43309020--43309062	17	2.4	18	82	17	63	11	6	0	81	0.87
43313149--43313188	19	2.2	19	90	4	64	65	15	5	15	1.44
43313715--43313987	131	2.1	131	92	0	456	34	13	13	38	1.84
43314161--43314196	18	2.0	18	89	10	56	52	8	16	22	1.70
43315205--43315248	5	8.8	5	85	9	63	75	2	0	22	0.92
43315207--43315255	24	2.0	24	88	7	73	73	4	2	20	1.10
43332221--43332271	21	2.4	21	100	0	102	17	0	49	33	1.47
43332585--43333077	251	2.0	250	85	5	665	30	16	19	33	1.94
43334112--43334157	22	2.1	22	95	0	83	41	2	13	43	1.55
43335263--43335303	19	2.2	19	95	0	73	48	9	0	41	1.36
43335339--43335372	17	1.9	18	88	5	52	38	5	0	55	1.24
43335466--43335490	12	2.1	12	100	0	50	44	16	8	32	1.76
43335487--43335530	19	2.3	19	92	0	70	47	11	2	38	1.52
43335526--43335849	9	36.2	9	74	13	267	45	16	0	36	1.53
43335601--43335680	25	3.1	25	82	10	106	46	12	1	40	1.50
43335580--43335640	32	1.9	32	83	6	79	52	13	0	34	1.40
43335601--43335672	28	2.8	25	89	6	99	48	12	1	37	1.50
43339398--43339766	104	3.6	104	88	1	535	20	19	28	31	1.97
43343936--43344004	21	3.3	21	83	0	75	33	18	42	5	1.75
43344426--43344508	42	2.0	43	90	2	132	32	21	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43344439--43344561	42	3.0	42	80	13	105	26	21	18	32	1.97
43344653--43344696	22	2.0	23	86	4	63	47	25	18	9	1.77
43356565--43356614	23	2.2	23	85	0	64	42	18	14	26	1.87
43358545--43358581	18	2.2	18	85	9	51	43	5	0	51	1.24
43359689--43359743	6	9.0	6	86	11	76	50	0	0	49	1.00
43362630--43362668	13	2.7	14	81	18	53	76	5	0	17	0.96
43362630--43362665	7	5.0	7	90	6	54	80	2	0	16	0.83
43364000--43364024	9	2.8	9	100	0	50	72	0	0	28	0.86
43374190--43374227	15	2.4	16	91	4	60	76	0	21	2	0.91
43375100--43375202	37	2.7	38	80	11	111	27	17	25	30	1.97
43378047--43378153	25	4.3	25	86	1	144	15	24	22	37	1.93
43385153--43385259	25	4.3	25	86	1	144	15	24	22	37	1.93
43392343--43392409	30	2.3	30	82	10	84	28	8	7	55	1.58
43393677--43393712	3	12.0	3	100	0	72	0	33	0	66	0.92
43397460--43397763	109	2.8	109	82	3	330	44	19	15	21	1.87
43397460--43397663	109	1.9	109	91	0	336	41	19	18	21	1.91
43399990--43400036	4	11.8	4	93	0	76	25	2	0	72	0.96
43400998--43401056	31	1.9	31	86	6	84	40	3	11	44	1.58
43401061--43401142	31	2.6	32	71	9	80	37	6	14	41	1.71
43403815--43403970	77	2.0	78	89	1	242	32	9	10	47	1.71
43403932--43404045	58	2.0	58	87	5	169	49	7	9	34	1.63
43410798--43410865	22	3.1	21	81	8	82	30	27	1	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43410837--43410895	30	2.0	30	93	0	100	30	35	0	33	1.58
43410867--43410908	22	1.9	22	90	0	66	33	33	0	33	1.58
43410964--43411012	19	2.7	18	78	6	53	32	0	0	67	0.91
43410951--43411005	27	2.0	29	89	7	87	36	0	1	61	1.06
43410952--43411012	28	2.1	29	85	8	81	36	0	1	62	1.05
43411102--43411157	24	2.3	23	77	19	60	28	0	5	66	1.14
43413271--43413345	23	3.2	24	83	5	91	48	26	0	25	1.52
43413310--43413893	33	18.9	32	79	13	499	48	22	0	27	1.52
43413293--43413891	28	19.8	28	76	16	445	49	23	0	27	1.52
43413355--43413456	43	2.6	38	78	17	116	49	22	0	28	1.50
43413366--43413458	43	2.2	43	92	1	152	49	20	0	30	1.49
43413437--43413520	23	3.4	23	80	15	105	46	26	1	26	1.60
43413402--43413891	122	4.1	121	87	8	666	48	23	0	28	1.53
43413423--43413893	33	15.9	28	83	11	502	48	23	0	28	1.53
43417421--43417465	23	2.0	23	95	0	81	51	11	4	33	1.58
43417527--43417561	18	1.9	18	88	0	52	74	5	2	17	1.14
43418070--43418104	10	3.4	10	96	4	61	40	11	20	28	1.87
43419608--43419651	19	2.3	19	84	7	54	59	0	4	36	1.18
43419685--43419750	23	2.8	22	80	17	71	45	3	1	50	1.26
43419685--43419773	22	3.9	24	77	13	82	40	4	1	53	1.28
43419732--43419784	22	2.5	22	93	3	90	26	5	0	67	1.12
43421850--43421886	18	2.1	18	94	0	65	0	56	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43421946--43421995	25	2.0	25	92	0	82	4	32	4	60	1.34
43422183--43422208	11	2.4	11	100	0	52	23	0	15	61	1.33
43424490--43424528	20	2.0	20	94	0	69	48	0	2	48	1.15
43424627--43424666	20	2.0	20	85	0	53	50	10	10	30	1.69
43426024--43426055	16	2.0	16	100	0	64	50	31	0	18	1.48
43427760--43427845	29	2.9	29	82	3	91	38	20	16	24	1.93
43430356--43430396	16	2.6	16	81	14	50	17	24	0	58	1.38
43431854--43431885	10	3.1	11	86	13	50	25	0	6	68	1.12
43432543--43432572	15	2.0	15	100	0	60	20	20	20	40	1.92
43437299--43437390	43	2.1	43	93	0	157	29	16	8	45	1.77
43441425--43441484	29	2.0	30	83	3	77	41	3	8	46	1.50
43444885--43444918	16	2.1	16	88	0	50	50	11	11	26	1.73
43450993--43451017	12	2.1	12	100	0	50	24	36	24	16	1.94
43451177--43451256	9	8.8	9	82	8	90	40	26	10	23	1.86
43451403--43451432	13	2.3	13	100	0	60	16	0	43	40	1.48
43453948--43454027	31	2.7	29	84	9	92	40	10	10	40	1.72
43455287--43455352	32	2.1	32	100	0	132	37	12	9	40	1.74
43472116--43472174	12	4.6	13	78	18	52	59	3	0	37	1.14
43472139--43472173	15	2.3	16	90	9	56	60	5	0	34	1.21
43472116--43472166	3	16.7	3	76	11	50	58	1	0	39	1.09
43481964--43482001	19	2.0	19	100	0	76	26	26	15	31	1.96
43489022--43489064	19	2.3	19	88	8	61	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43489022--43489064	18	2.2	20	84	15	56	44	0	0	55	0.99
43490072--43490104	13	2.4	14	85	5	50	27	30	6	36	1.81
43503401--43503851	44	10.5	44	70	14	223	30	21	21	26	1.98
43503620--43503863	87	2.9	83	86	6	328	29	21	23	25	1.99
43509589--43509855	124	2.1	125	94	0	464	34	17	19	28	1.95
43509831--43509877	14	3.4	14	82	5	69	25	19	25	29	1.98
43509839--43509879	13	3.1	13	79	6	55	26	17	26	29	1.97
43509876--43509960	21	4.0	21	93	3	152	23	0	31	44	1.54
43509982--43510006	12	2.1	12	100	0	50	60	0	0	40	0.97
43510518--43510560	18	2.4	18	88	0	59	44	9	27	18	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214