genome.fa.s25.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  155  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46084593--46085014	77	5.5	77	76	12	404	34	22	14	28	1.94
46084725--46085014	158	1.8	158	88	3	449	33	22	15	28	1.94
46084866--46085006	72	2.0	72	91	2	230	39	24	14	21	1.91
46085160--46085499	72	4.5	73	85	6	405	33	20	15	31	1.93
46085160--46085499	74	4.5	74	85	6	416	33	20	15	31	1.93
46085160--46085517	146	2.4	148	81	7	422	35	19	14	30	1.92
46093971--46094018	16	3.1	15	90	6	69	64	2	2	31	1.16
46093967--46094022	24	2.3	24	81	6	69	66	1	1	30	1.12
46093967--46094018	8	6.5	8	82	8	61	65	1	1	30	1.14
46094139--46094195	19	2.8	20	73	7	62	56	5	7	31	1.49
46094174--46094238	25	2.8	24	83	6	80	52	6	7	33	1.55
46094227--46094293	29	2.3	29	84	5	82	58	4	4	32	1.38
46094188--46094333	76	1.9	77	83	4	188	54	4	6	34	1.46
46094168--46094385	23	9.0	25	71	15	120	55	4	5	34	1.43
46094227--46094305	29	2.7	29	80	9	72	56	3	5	34	1.39
46094867--46095011	30	4.8	30	87	1	186	20	4	48	26	1.68
46097402--46097565	82	2.0	80	95	2	292	43	21	16	18	1.88
46098355--46098389	17	2.0	18	88	5	54	45	14	5	34	1.68
46099022--46099106	35	2.4	35	78	5	91	34	18	4	42	1.72
46103093--46103138	22	2.1	22	88	8	67	58	0	4	36	1.18
46103150--46103199	17	2.9	17	85	11	66	60	0	4	36	1.16
46105865--46105938	14	5.2	14	76	9	69	29	13	1	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46105895--46105958	29	2.1	29	85	5	83	29	14	0	56	1.39
46105901--46105937	15	2.5	15	91	4	58	32	10	0	56	1.34
46105901--46105944	22	2.0	22	86	0	61	31	15	0	52	1.44
46112807--46112882	24	3.1	24	84	5	100	15	26	23	34	1.95
46115755--46115829	36	2.1	36	100	0	150	22	16	10	50	1.75
46117169--46117491	158	2.0	158	93	1	549	38	11	16	33	1.85
46118413--46118560	75	2.0	75	89	2	226	33	6	13	47	1.67
46120818--46120870	4	13.2	4	91	0	70	24	7	24	43	1.80
46121228--46121288	31	2.0	31	83	6	79	42	6	3	47	1.45
46124229--46124254	9	2.9	9	100	0	52	53	0	34	11	1.37
46124578--46124616	6	6.5	6	100	0	78	0	33	17	48	1.48
46124724--46124758	15	2.3	15	90	0	52	14	60	11	14	1.60
46128624--46128798	95	1.9	93	80	11	205	47	5	2	45	1.37
46129151--46129180	15	1.9	16	93	6	53	33	0	3	63	1.11
46129494--46129562	35	2.0	35	82	5	86	36	5	4	53	1.45
46130884--46130922	3	12.7	3	83	5	51	38	0	0	61	0.96
46131185--46131223	16	2.4	16	82	0	51	35	10	2	51	1.50
46143144--46143217	24	3.1	24	82	7	89	16	25	24	33	1.95
46145825--46145899	36	2.1	36	100	0	150	22	16	10	50	1.75
46147236--46147560	158	2.1	158	93	1	553	38	11	16	33	1.85
46148478--46148625	75	2.0	75	89	2	226	33	6	13	47	1.67
46150885--46150937	4	13.2	4	91	0	70	24	7	24	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46151296--46151356	31	2.0	31	83	6	79	42	6	3	47	1.45
46154306--46154331	9	2.9	9	100	0	52	53	0	34	11	1.37
46154655--46154693	6	6.5	6	100	0	78	0	33	17	48	1.48
46154801--46154835	15	2.3	15	90	0	52	14	60	11	14	1.60
46158991--46159058	24	2.9	23	70	18	59	29	4	5	60	1.40
46159731--46159799	35	2.0	35	82	5	86	36	5	4	53	1.45
46161131--46161167	3	12.3	3	88	0	56	37	0	0	62	0.96
46161321--46161373	26	2.0	26	82	7	63	32	11	1	54	1.47
46161321--46161376	27	2.1	27	83	6	69	32	12	1	53	1.49
46161444--46161482	16	2.4	16	82	0	51	35	10	2	51	1.50
46165533--46165569	17	2.1	18	90	5	58	29	24	0	45	1.53
46170325--46170574	46	5.4	46	93	0	394	26	16	27	30	1.97
46170610--46171217	44	13.8	44	65	14	180	31	18	23	26	1.97
46170547--46171369	132	6.2	132	93	0	1360	31	18	22	26	1.97
46172818--46172851	3	11.3	3	87	0	50	38	0	0	61	0.96
46173005--46173061	28	2.1	27	83	3	69	33	12	1	52	1.49
46174840--46174881	20	2.2	19	87	8	59	50	7	7	35	1.57
46178547--46178581	12	2.9	12	82	0	52	54	14	5	25	1.62
46181715--46181752	3	12.7	3	100	0	76	31	0	0	68	0.90
46186081--46186109	3	9.7	3	100	0	58	31	0	0	68	0.89
46186110--46186295	73	2.5	73	99	0	363	27	6	24	40	1.80
46192025--46192052	5	5.6	5	100	0	56	82	0	0	17	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46194182--46194233	24	2.2	24	89	0	77	55	9	1	32	1.43
46196152--46196203	24	2.2	24	89	0	77	55	9	1	32	1.43
46199479--46199571	18	5.2	18	93	0	159	26	24	17	31	1.97
46199479--46199571	36	2.6	36	98	0	177	26	24	17	31	1.97
46220473--46220515	18	2.5	17	76	3	50	34	0	2	62	1.08
46221397--46221766	183	2.0	183	97	0	704	39	7	15	36	1.77
46223083--46223122	3	13.7	3	94	5	73	70	0	0	30	0.88
46224264--46224446	75	2.4	75	81	3	208	26	24	23	26	2.00
46229228--46229317	39	2.2	41	88	3	130	53	5	2	38	1.37
46230840--46230898	31	1.9	31	83	13	77	38	0	3	57	1.15
46230835--46230905	21	3.7	20	71	15	60	39	0	2	57	1.13
46232003--46232052	20	2.5	21	80	9	59	54	4	0	42	1.19
46238742--46238839	42	2.2	44	85	5	128	38	15	14	31	1.87
46238981--46239012	13	2.4	14	85	15	50	56	0	0	43	0.99
46239058--46239123	21	2.9	22	76	14	71	46	1	0	51	1.10
46239058--46239131	37	2.0	37	84	5	96	47	1	0	51	1.09
46239141--46239187	16	2.9	16	84	12	60	55	0	0	44	0.99
46239220--46239276	15	3.5	15	71	17	51	50	3	0	45	1.18
46243887--46245987	44	47.6	44	67	13	296	29	20	18	31	1.96
46243875--46244072	98	2.0	98	89	3	301	29	21	16	32	1.95
46244253--46244659	85	4.8	85	70	11	292	30	19	17	31	1.96
46244164--46245502	129	10.2	130	83	7	1563	29	20	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46244586--46244933	186	1.9	186	86	4	497	29	21	17	32	1.96
46245041--46245451	85	4.8	85	70	11	291	30	20	17	31	1.96
46243893--46246033	792	2.7	792	94	2	3581	29	20	18	31	1.96
46245670--46245910	46	5.4	46	70	16	159	29	21	19	29	1.98
46245557--46246036	175	2.7	174	90	1	764	28	21	18	31	1.97
46245564--46246035	87	5.4	86	72	10	395	28	21	18	31	1.97
46247265--46247311	7	7.0	7	80	9	62	14	17	2	65	1.36
46247265--46247311	13	3.5	13	80	13	60	14	17	2	65	1.36
46247269--46247307	20	2.0	20	94	0	69	15	17	2	64	1.41
46256499--46256594	35	2.7	35	80	12	97	70	8	8	12	1.32
46257447--46257475	14	2.0	15	93	6	51	75	0	10	13	1.04
46258668--46259653	128	7.7	128	93	0	1621	31	19	24	24	1.98
46259747--46259905	44	3.6	44	78	7	119	30	18	25	25	1.98
46271778--46271835	20	2.8	20	80	12	62	12	6	10	70	1.33
46275394--46275450	30	1.9	30	85	7	80	19	10	7	63	1.49
46283217--46283302	41	2.1	41	100	0	172	48	11	17	22	1.79
46288504--46289036	22	24.6	21	69	17	175	48	29	0	21	1.55
46288592--46289037	22	20.8	22	75	7	312	48	29	0	21	1.55
46288919--46289044	7	17.1	7	69	21	62	49	26	0	23	1.56
46288991--46289044	8	7.1	8	78	16	53	50	24	0	25	1.50
46292246--46292812	125	4.5	126	84	4	698	30	22	17	29	1.96
46292246--46292780	251	2.1	250	91	1	849	30	22	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46303598--46303638	18	2.3	19	80	20	52	70	2	0	26	0.99
46303864--46303916	20	2.7	20	82	8	63	24	1	0	73	0.93
46314397--46314437	16	2.5	15	88	11	55	53	2	0	43	1.13
46314423--46314865	215	2.1	213	90	5	698	42	6	7	42	1.59
46320563--46320598	17	2.1	17	94	0	63	22	25	8	44	1.80
46320819--46321095	41	6.8	41	84	4	337	19	20	31	29	1.97
46326789--46327073	43	6.7	43	83	0	284	23	15	32	29	1.95
46326789--46327073	86	3.3	86	84	3	324	23	15	32	29	1.95
46326795--46327062	129	2.1	128	81	4	315	23	14	32	29	1.95
46329284--46329341	28	2.0	29	87	9	84	65	1	15	17	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214