genome.fa.s25.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  62  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17593867--17594275	54	7.6	53	81	8	400	21	19	17	41	1.90
17593852--17594265	81	5.1	81	79	9	411	21	19	16	42	1.89
17597405--17597462	25	2.3	25	90	0	89	32	24	17	25	1.96
17597416--17597473	25	2.3	25	90	0	89	34	24	17	24	1.96
17603406--17603470	32	2.0	32	87	0	94	18	21	16	43	1.88
17614674--17614712	6	6.5	6	93	0	69	53	0	28	17	1.44
17614862--17614916	25	2.2	26	90	3	85	38	9	20	32	1.84
17616463--17616522	30	2.0	29	93	3	102	38	8	18	35	1.81
17618025--17618102	25	3.2	25	77	1	77	28	23	17	30	1.97
17622450--17622505	24	2.3	24	90	0	94	39	16	21	23	1.92
17636125--17636188	18	3.6	17	71	20	51	17	4	0	78	0.92
17636133--17636196	27	2.4	25	77	10	65	18	6	0	75	1.01
17636457--17636516	21	2.8	21	82	10	68	10	6	25	58	1.55
17639964--17639996	13	2.5	13	95	0	57	33	0	18	48	1.48
17648517--17648604	38	2.3	38	92	2	140	45	19	7	27	1.78
17650560--17650589	15	2.0	15	93	0	51	56	6	6	30	1.51
17663322--17663374	17	3.1	17	86	0	79	22	22	3	50	1.64
17664447--17664478	11	2.9	11	100	0	64	46	25	0	28	1.53
17667958--17668007	17	2.9	17	87	0	82	24	24	6	46	1.75
17669462--17669506	19	2.3	21	77	14	51	22	42	0	35	1.54
17669479--17669537	30	1.9	31	86	3	84	22	40	1	35	1.64
17682703--17682757	27	2.0	28	92	3	94	36	10	30	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17694410--17694475	33	2.0	33	85	5	89	27	22	25	24	2.00
17694862--17695166	27	11.3	27	86	2	371	20	19	16	43	1.88
17697743--17697841	39	2.5	39	88	0	144	46	19	3	31	1.65
17701740--17701787	24	2.0	24	100	0	96	25	4	25	45	1.71
17704176--17704291	42	2.8	42	83	6	130	45	20	14	18	1.85
17720480--17720550	15	5.1	14	77	8	65	32	2	0	64	1.08
17720497--17720579	13	6.7	12	72	17	55	32	4	0	62	1.16
17720482--17720569	41	2.2	41	97	2	169	32	4	0	62	1.15
17729675--17729758	12	7.9	11	71	21	72	57	0	2	40	1.12
17729691--17729809	40	2.9	39	90	6	175	62	0	3	34	1.12
17735510--17735548	18	2.2	17	86	4	51	0	2	30	66	1.05
17735518--17735560	6	7.3	6	87	12	63	0	2	27	69	1.00
17744316--17744348	12	2.8	12	90	9	50	6	21	51	21	1.69
17750190--17750487	120	2.5	120	97	0	560	43	1	5	49	1.33
17750241--17750429	59	3.2	59	72	11	213	42	0	4	52	1.24
17750729--17750789	16	3.8	16	84	0	77	24	32	3	39	1.72
17752728--17752770	21	2.0	21	95	0	77	53	13	16	16	1.73
17760419--17760450	13	2.5	13	100	0	64	37	6	15	40	1.73
17760452--17760501	20	2.5	20	81	15	68	56	4	24	16	1.57
17770992--17771048	23	2.5	23	88	0	78	15	15	17	50	1.78
17784673--17784776	49	2.1	49	89	0	154	49	10	8	31	1.68
17788045--17788161	44	2.6	45	71	18	127	47	10	12	29	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17813220--17813257	13	2.8	14	80	19	53	65	0	5	28	1.14
17813849--17813892	17	2.6	17	85	3	63	47	0	11	40	1.39
17813821--17813919	33	3.2	33	68	23	79	51	2	12	34	1.51
17814379--17814447	19	3.5	19	88	7	111	34	11	11	42	1.78
17814889--17815005	44	2.7	44	82	2	146	28	22	18	30	1.97
17814982--17815086	44	2.5	43	82	4	124	30	20	20	28	1.98
17814974--17815086	41	2.7	41	81	4	127	28	22	20	29	1.98
17814974--17815117	44	3.3	44	79	4	116	27	22	20	29	1.98
17815297--17815621	88	3.7	89	80	6	315	23	24	24	27	2.00
17815394--17815622	44	5.2	45	68	13	134	21	25	24	28	1.99
17821827--17821914	30	2.8	33	80	14	91	59	5	2	32	1.34
17821926--17821975	24	2.1	24	85	7	66	64	0	8	28	1.22
17822054--17822097	17	2.6	17	85	3	63	47	0	11	40	1.39
17822223--17822264	3	14.0	3	94	0	75	66	2	0	30	1.04
17822257--17822305	21	2.3	21	86	6	64	71	2	2	24	1.07
17822594--17822663	19	3.5	20	92	7	117	35	14	11	38	1.82
17832275--17832319	18	2.5	18	82	7	56	40	17	4	37	1.70
17835521--17835596	33	2.3	33	88	6	111	23	26	26	23	2.00
17841874--17841925	27	1.9	27	92	0	86	42	17	17	23	1.89
17841877--17841938	27	2.3	27	82	0	79	46	20	12	19	1.83
17847525--17847595	36	2.0	36	97	0	133	35	16	14	33	1.89
17853997--17854107	44	2.5	44	83	2	134	29	18	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17854301--17854400	51	2.0	51	85	0	137	26	27	18	29	1.98
17854544--17854677	43	3.0	45	69	4	119	28	27	17	26	1.98
17854544--17854716	88	2.0	88	92	0	292	28	27	17	26	1.98
17854569--17854708	44	3.2	44	73	4	156	29	27	18	25	1.98
17874406--17874523	58	2.0	58	98	0	227	37	21	10	31	1.87
17890225--17890427	40	5.1	39	85	4	271	35	19	27	17	1.94
17890226--17890371	20	7.3	20	62	9	64	35	18	29	16	1.93
17890323--17890391	20	3.5	20	71	0	57	34	20	31	13	1.91
17890207--17890434	80	2.8	80	84	2	235	36	18	27	17	1.94
17895529--17895567	22	1.9	21	85	15	55	23	0	7	69	1.14
17898258--17898377	62	1.9	62	100	0	240	40	16	5	37	1.73
17900897--17901099	59	3.4	59	92	1	336	52	8	4	33	1.53
17903038--17903063	11	2.4	11	100	0	52	73	0	7	19	1.07
17903011--17903056	20	2.3	20	75	17	51	67	0	2	30	1.03
17909638--17909670	14	2.3	15	89	5	50	3	18	0	78	0.87
17910216--17910242	6	4.5	6	100	0	54	14	0	48	37	1.45
17911328--17911387	29	2.1	27	81	6	66	30	11	15	43	1.82
17911655--17912038	127	3.1	126	90	2	567	28	15	21	33	1.95
17915243--17915300	7	8.4	7	94	1	73	22	0	41	36	1.54
17915243--17915300	14	4.2	14	91	2	82	22	0	41	36	1.54
17915243--17915300	21	2.8	21	89	2	91	22	0	41	36	1.54
17915265--17915307	21	2.0	21	81	0	50	32	0	34	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17915286--17915895	29	21.2	29	86	4	713	29	1	25	43	1.63
17915688--17915911	28	8.5	24	71	20	139	29	3	22	44	1.68
17915865--17915925	19	3.0	19	83	9	59	31	3	18	47	1.64
17918060--17918093	15	2.3	15	90	5	52	67	5	2	23	1.26
17918290--17918331	22	1.9	22	90	0	66	33	0	33	33	1.58
17918333--17918409	22	3.6	21	84	6	93	37	1	27	33	1.65
17928503--17928600	41	2.4	41	89	0	160	24	26	21	27	1.99
17929259--17929309	12	4.2	12	76	14	50	43	7	3	45	1.51
17931870--17931894	4	6.2	4	100	0	50	52	24	0	24	1.48
17936125--17936357	41	5.6	40	81	8	286	36	26	16	20	1.93
17936121--17936360	84	2.9	84	96	0	444	36	26	16	20	1.94
17939007--17939066	30	2.0	31	86	3	86	20	36	0	43	1.52
17939325--17939371	17	2.8	17	79	20	62	36	2	6	55	1.37
17943574--17943614	16	2.5	16	88	11	57	41	2	2	53	1.27
17944220--17944260	16	2.5	16	88	11	57	41	2	2	53	1.27
17943154--17944451	646	2.0	646	98	0	2483	34	14	12	38	1.83
17950102--17950143	21	2.1	19	86	8	57	16	4	9	69	1.33
17954261--17954303	22	2.0	22	100	0	86	20	9	27	41	1.83
17954334--17954432	39	2.5	39	80	3	101	30	3	20	46	1.65
17958824--17958856	11	2.9	12	86	13	52	6	18	0	75	1.00
17958821--17958863	12	3.9	11	82	17	54	6	16	0	76	0.99
17958860--17958915	28	2.0	29	89	3	87	21	5	8	64	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17964471--17964563	32	2.9	32	77	0	96	37	22	20	19	1.94
17964738--17964819	24	3.4	24	79	3	85	48	20	7	23	1.74
17964755--17964848	24	3.9	24	77	5	84	44	23	8	23	1.80
17964885--17965088	27	7.6	27	80	3	133	23	19	20	37	1.94
17964885--17965088	54	3.8	54	82	2	241	23	19	20	37	1.94
17964884--17965088	107	1.9	108	89	3	324	22	19	20	37	1.94
17964865--17965088	80	2.8	80	80	5	247	23	20	19	36	1.95
17964943--17965106	80	2.0	80	82	6	199	24	18	20	36	1.95
17966147--17966181	17	2.0	17	88	5	52	14	2	5	77	1.07
17966988--17967041	24	2.2	24	86	0	81	31	5	3	59	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214