genome.fa.s25.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  153  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45539820--45539856	2	18.5	2	100	0	74	0	48	0	51	1.00
45550099--45550150	24	2.2	24	92	0	86	55	7	1	34	1.39
45552068--45552119	24	2.2	24	92	0	86	57	9	0	32	1.31
45568713--45568756	22	1.9	24	81	9	56	63	4	4	27	1.33
45568954--45569003	18	2.8	18	80	14	59	32	4	0	64	1.12
45576954--45577012	28	2.1	28	100	0	118	37	35	3	23	1.72
45577727--45577768	16	2.7	16	81	3	50	57	0	0	42	0.99
45587794--45587846	28	1.9	28	84	3	72	60	7	1	30	1.35
45589306--45589430	43	2.9	43	91	1	198	36	20	16	25	1.94
45589308--45589464	43	3.7	42	86	4	154	35	19	16	28	1.94
45589848--45589893	21	2.2	21	88	0	65	6	43	15	34	1.72
45594711--45594788	9	9.1	9	71	10	65	30	2	23	43	1.67
45594717--45594766	25	2.0	25	84	0	64	32	0	22	46	1.52
45594711--45594787	34	2.3	34	84	4	93	31	2	23	42	1.68
45596423--45596473	19	2.7	19	100	0	102	49	0	5	45	1.26
45596614--45596662	25	1.9	26	87	4	73	22	2	4	71	1.13
45596624--45596669	13	3.7	12	82	8	56	26	2	0	71	0.97
45597341--45597417	38	2.0	38	100	0	154	38	5	2	53	1.37
45598081--45598111	15	2.1	15	93	0	53	35	45	0	19	1.51
45598499--45598746	73	3.4	73	85	2	363	23	25	23	27	2.00
45598645--45599087	114	3.9	114	88	1	647	25	25	22	26	2.00
45598986--45599130	74	2.0	74	88	0	218	25	23	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45602033--45602129	47	2.1	47	100	0	194	51	4	12	31	1.58
45611168--45611225	21	2.8	21	69	26	59	46	1	1	50	1.22
45615874--45615912	6	6.5	6	96	0	69	0	64	17	17	1.30
45620503--45620527	2	12.5	2	100	0	50	52	0	48	0	1.00
45622750--45622978	126	1.8	128	83	4	286	52	10	13	22	1.71
45624126--45624166	19	2.2	19	86	0	55	48	2	2	46	1.28
45624639--45624680	20	2.0	20	86	4	57	69	0	4	26	1.08
45625099--45625123	7	3.6	7	100	0	50	48	0	0	52	1.00
45625093--45625131	14	2.8	14	76	0	51	56	0	5	38	1.22
45632511--45632559	16	3.0	16	75	3	53	73	0	14	12	1.10
45633358--45633395	18	2.2	18	90	9	62	21	5	2	71	1.19
45638060--45638098	18	2.2	18	95	4	71	61	5	7	25	1.44
45638059--45638098	17	2.2	19	86	13	66	62	5	7	25	1.42
45644017--45644046	12	2.6	12	94	5	53	73	13	0	13	1.10
45646362--45646394	15	2.2	15	100	0	66	24	6	18	51	1.68
45646663--45646694	13	2.3	15	89	10	50	43	0	0	56	0.99
45651266--45651389	57	2.2	57	94	1	214	44	4	21	29	1.71
45651266--45651403	56	2.4	57	90	1	188	42	3	23	30	1.71
45665494--45665540	23	1.9	26	83	12	64	48	8	10	31	1.68
45676403--45676826	210	2.0	211	90	2	665	33	15	20	31	1.93
45680076--45680111	18	2.0	18	88	0	54	25	2	19	52	1.59
45680113--45680430	55	5.8	55	79	7	286	27	7	15	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45680194--45680357	58	2.9	57	83	8	187	28	9	15	46	1.76
45680099--45680421	113	2.9	110	76	8	334	27	7	16	48	1.73
45681705--45681770	28	2.2	29	79	15	73	51	3	0	45	1.16
45685908--45685942	15	2.4	14	90	4	52	42	8	0	48	1.33
45686831--45686895	25	2.5	26	80	7	78	26	21	27	24	1.99
45687031--45687110	26	3.1	26	78	5	83	36	18	27	17	1.94
45687203--45687265	25	2.6	25	82	7	76	36	20	23	19	1.95
45689416--45689460	18	2.5	18	85	0	63	55	4	0	40	1.20
45689420--45689460	12	3.4	12	86	0	55	53	4	0	41	1.22
45690182--45690221	19	2.2	19	90	4	64	15	12	0	72	1.12
45690373--45690432	5	12.2	5	76	16	54	56	1	0	41	1.09
45694164--45694275	24	4.8	24	73	11	74	36	4	3	55	1.37
45694219--45694284	23	2.8	24	80	15	84	34	6	3	56	1.40
45694299--45694355	24	2.4	24	77	16	64	28	7	8	56	1.56
45695034--45695068	18	2.0	17	88	5	52	17	5	17	60	1.55
45703142--45703175	15	2.1	16	84	15	52	32	0	0	67	0.91
45703147--45703175	15	1.9	15	100	0	58	34	0	0	65	0.93
45704365--45704613	42	5.9	42	84	6	292	30	21	22	26	1.99
45710619--45710664	7	6.0	7	90	9	56	30	0	17	52	1.45
45710626--45710766	9	16.4	9	75	15	113	36	1	19	43	1.60
45710619--45710748	32	3.9	33	75	16	124	36	1	20	42	1.61
45710752--45710777	13	2.0	13	100	0	52	30	0	15	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45711013--45711048	16	2.2	16	90	0	54	36	0	16	47	1.47
45711022--45711105	25	3.4	25	76	3	89	33	2	21	42	1.66
45710949--45711105	9	18.6	9	67	12	82	31	3	19	44	1.69
45711123--45711168	7	6.6	7	78	16	51	28	0	10	60	1.30
45711110--45711239	27	5.2	26	69	20	89	36	1	12	49	1.50
45711123--45711168	15	3.3	15	79	17	62	28	0	10	60	1.30
45711822--45711925	33	3.2	33	67	8	104	43	4	10	41	1.60
45711822--45711927	32	3.2	32	67	9	97	44	4	10	40	1.60
45714286--45714334	16	3.0	17	88	8	75	48	16	0	34	1.46
45714362--45714706	113	3.0	110	80	6	377	27	22	17	31	1.97
45714605--45714745	74	1.9	73	82	7	178	29	22	17	30	1.97
45714491--45715082	188	3.1	188	93	0	986	27	23	17	31	1.97
45714793--45714933	74	1.9	73	85	4	194	30	23	16	29	1.96
45714880--45715402	113	4.6	113	82	5	588	27	21	18	31	1.97
45717036--45717074	15	2.6	16	88	8	55	61	28	0	10	1.28
45718197--45718227	3	10.3	3	92	0	53	29	0	3	67	1.06
45718354--45718440	3	29.0	3	78	0	84	32	3	4	59	1.34
45726061--45726425	202	1.8	197	80	5	428	32	10	9	46	1.72
45726801--45726833	17	2.0	17	88	5	50	57	9	0	33	1.30
45737638--45737717	31	2.5	31	84	8	90	48	2	13	35	1.56
45752739--45752773	15	2.4	15	90	4	54	48	0	8	42	1.33
45756634--45756710	7	11.0	7	76	19	72	22	5	0	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45756676--45756709	12	2.8	12	87	12	52	23	5	0	70	1.09
45757414--45757605	101	1.9	101	80	7	228	31	14	23	30	1.94
45757593--45757638	4	11.8	4	78	21	53	76	2	0	21	0.90
45757589--45757634	24	2.0	24	91	4	76	76	2	0	21	0.90
45757589--45757638	16	3.1	17	82	8	68	76	2	0	22	0.89
45757593--45757655	28	2.3	27	83	8	81	74	1	3	20	1.04
45762394--45762448	23	2.4	23	87	0	74	25	14	32	27	1.95
45766271--45766305	18	1.9	18	94	0	61	31	2	8	57	1.44
45768833--45768890	29	2.1	29	83	6	75	51	3	0	44	1.18
45768851--45768898	13	3.5	14	79	20	57	56	0	0	43	0.99
45817199--45817246	17	2.8	17	78	6	53	50	2	6	41	1.39
45832077--45832169	44	2.1	44	86	4	125	45	13	17	23	1.84
45832087--45832183	44	2.2	44	81	3	106	43	14	21	20	1.87
45832190--45832421	50	4.7	51	80	5	253	28	21	29	20	1.98
45834037--45834087	16	3.1	17	78	18	63	1	27	0	70	0.98
45835300--45835335	6	6.0	6	100	0	72	66	0	16	16	1.25
45849663--45849706	16	2.6	16	79	10	52	47	4	0	47	1.22
45855477--45855584	44	2.4	44	87	3	144	29	23	13	33	1.93
45861844--45861951	44	2.4	44	87	3	144	29	23	13	33	1.93
45870972--45871081	42	2.6	42	82	4	107	18	20	17	43	1.88
45882026--45882084	29	2.0	30	83	3	75	50	11	5	32	1.61
45888067--45888101	3	11.7	3	93	0	61	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45889651--45889739	39	2.2	40	86	5	119	57	1	2	39	1.19
45891139--45891202	27	2.4	27	83	0	74	28	32	31	7	1.85
45891344--45891405	20	3.2	19	76	19	56	67	0	29	3	1.06
45891716--45891814	40	2.5	38	81	15	119	32	4	9	54	1.51
45891591--45891822	76	2.9	78	75	11	229	33	5	11	49	1.61
45896564--45897419	157	5.4	157	91	3	1297	29	7	8	54	1.58
45897572--45897634	14	4.5	14	77	13	67	68	6	3	22	1.27
45897577--45897676	51	1.9	52	93	2	175	63	8	5	24	1.42
45897632--45897702	30	2.4	30	90	4	108	60	8	7	23	1.50
45897642--45897692	16	3.3	16	71	20	54	54	11	7	25	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214