genome.fa.s25.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  141  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42519326--42519366	9	4.8	9	96	3	68	58	0	0	41	0.98
42520850--42520895	23	2.0	23	86	0	65	26	8	26	39	1.85
42521016--42521115	43	2.3	43	84	3	121	42	27	13	18	1.86
42525951--42526009	28	2.1	28	81	6	66	33	23	20	22	1.97
42526372--42526689	27	11.8	27	80	5	284	20	18	16	43	1.88
42531891--42531926	18	2.1	18	89	5	56	16	27	11	44	1.82
42532697--42532807	28	4.0	28	85	0	141	32	25	21	20	1.98
42533138--42533388	54	4.6	54	79	4	247	21	18	18	41	1.90
42533181--42533389	109	1.9	109	91	1	339	21	17	19	41	1.91
42533135--42533388	27	9.4	27	80	6	212	21	18	18	40	1.91
42536596--42536629	3	11.3	3	93	0	59	70	0	0	29	0.87
42541205--42541246	21	2.0	20	86	4	57	14	11	23	50	1.76
42546049--42546092	21	2.1	21	86	0	61	47	4	6	40	1.50
42546137--42546194	24	2.3	26	80	14	68	58	1	6	32	1.35
42548084--42548338	44	5.8	44	71	8	169	28	24	17	29	1.97
42548087--42548434	132	2.6	131	89	1	534	28	24	18	28	1.98
42548003--42548429	132	3.2	133	84	3	510	29	23	18	28	1.98
42548485--42548920	89	4.9	89	91	1	696	27	24	18	29	1.98
42549011--42549214	44	4.6	44	68	11	148	27	24	18	29	1.98
42548941--42549270	132	2.5	132	94	0	588	28	23	19	28	1.98
42549484--42549687	44	4.6	44	66	9	137	26	24	19	29	1.98
42549402--42549743	132	2.6	132	95	0	612	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42549398--42549715	44	7.2	44	64	15	131	26	25	19	28	1.99
42548863--42549831	473	2.0	473	96	0	1778	27	24	20	28	1.99
42550983--42551023	14	3.0	13	89	7	55	14	19	0	65	1.26
42550983--42551026	21	2.1	21	91	0	70	15	20	0	63	1.31
42550993--42551026	7	4.9	7	86	13	52	14	17	0	67	1.23
42553806--42553845	19	2.0	20	85	4	55	47	7	20	25	1.75
42553878--42553903	13	2.0	13	100	0	52	46	15	7	30	1.74
42555762--42555827	28	2.3	29	76	7	73	54	1	9	34	1.41
42556108--42556160	25	2.1	26	83	13	67	50	3	7	37	1.49
42556980--42557286	44	7.1	44	72	6	216	28	25	18	27	1.98
42557281--42557872	128	4.6	128	90	1	941	24	24	20	30	1.99
42558803--42558835	15	2.2	15	100	0	66	24	30	33	12	1.91
42559086--42559119	7	5.0	7	85	7	52	17	14	0	67	1.23
42559087--42559111	13	1.9	13	100	0	50	20	16	0	64	1.30
42574982--42575012	12	2.6	12	94	0	53	6	9	9	74	1.23
42576937--42577014	29	2.7	30	84	5	99	38	11	5	44	1.63
42578975--42579148	75	2.3	77	82	10	216	33	16	13	36	1.87
42589640--42589673	17	2.0	17	88	0	50	5	17	0	76	0.98
42594543--42594575	17	1.9	17	93	0	57	84	0	9	6	0.76
42604529--42604559	12	2.6	12	94	0	53	6	9	9	74	1.23
42606507--42606632	32	4.1	32	77	10	104	34	11	5	47	1.64
42607008--42607060	13	4.1	13	72	0	52	37	5	20	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42608776--42608963	82	2.4	78	92	3	304	32	16	12	38	1.86
42609845--42609884	18	2.2	18	100	0	80	52	0	27	20	1.46
42615768--42615816	21	2.3	20	86	6	62	28	0	14	57	1.38
42617274--42617311	19	2.0	19	94	0	67	15	21	28	34	1.94
42617657--42617688	8	3.9	8	95	4	55	46	0	12	40	1.42
42624251--42624279	10	2.7	11	94	5	51	41	0	20	37	1.53
42624593--42624657	25	2.7	24	76	4	67	20	26	18	35	1.95
42624765--42624837	25	2.8	25	78	8	74	15	23	24	36	1.93
42624898--42624945	25	1.9	25	82	0	60	18	27	16	37	1.92
42626359--42626397	16	2.4	16	86	0	51	38	2	17	41	1.64
42627135--42627224	47	1.9	46	88	6	137	15	10	20	54	1.69
42630983--42631020	18	2.1	18	95	0	67	5	23	2	68	1.23
42630983--42631030	18	2.7	18	87	3	53	4	25	6	64	1.35
42631753--42632560	138	6.0	135	78	8	646	30	20	18	31	1.96
42631753--42632408	44	14.6	44	77	8	538	31	20	17	30	1.95
42632330--42632555	92	2.4	93	79	7	255	30	19	19	30	1.97
42640966--42641006	19	2.1	20	95	4	75	51	0	0	48	1.00
42641112--42641271	33	4.8	32	72	8	108	31	13	24	30	1.94
42641080--42641291	100	2.1	100	85	0	280	31	14	24	30	1.94
42645477--42645523	19	2.4	20	86	10	62	42	4	21	31	1.72
42650524--42650561	18	2.1	18	95	0	67	5	18	5	71	1.25
42651480--42651517	20	1.9	20	88	0	58	65	13	0	21	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42652546--42652586	21	2.0	21	95	0	73	39	4	21	34	1.75
42656068--42656099	5	6.4	5	100	0	64	21	0	0	78	0.76
42656206--42656237	8	4.0	8	91	0	55	15	0	0	84	0.63
42657694--42657749	25	2.2	24	78	9	58	17	30	17	33	1.94
42657763--42657847	25	3.3	25	66	15	64	24	21	21	32	1.97
42663812--42663858	22	2.2	21	88	11	69	65	8	4	21	1.37
42664692--42664825	25	5.3	25	69	23	75	20	24	20	33	1.97
42664786--42664875	24	3.7	24	72	7	74	17	27	17	36	1.93
42667775--42667820	20	2.2	21	84	7	58	71	6	2	19	1.18
42671151--42671245	25	3.9	24	73	14	70	20	24	20	35	1.95
42672273--42672298	11	2.4	11	100	0	52	0	23	38	38	1.55
42675539--42676286	27	27.9	27	80	3	530	42	20	18	19	1.90
42676654--42676743	28	3.1	28	89	6	144	25	25	21	27	1.99
42677024--42677092	32	2.2	32	91	0	111	40	7	18	33	1.78
42679646--42679687	21	2.0	20	86	4	57	26	33	16	23	1.96
42682649--42682706	20	3.0	20	85	7	66	41	1	10	46	1.48
42682649--42682705	10	5.7	10	78	19	57	40	1	10	47	1.48
42685141--42685192	24	2.2	24	85	0	68	53	9	3	32	1.51
42689058--42689105	23	2.1	23	88	0	69	25	29	20	25	1.99
42694675--42694753	32	2.5	32	85	0	113	31	21	15	31	1.94
42694923--42694978	28	2.0	28	82	10	69	55	5	0	39	1.23
42694920--42694996	41	1.9	41	84	5	104	54	5	0	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42695782--42695871	45	2.0	46	91	2	146	40	8	8	42	1.67
42706507--42706559	26	2.0	26	82	7	63	47	1	1	49	1.23
42706539--42706579	15	2.9	15	79	20	52	60	0	0	39	0.96
42707342--42707367	7	3.7	7	100	0	52	15	53	0	30	1.42
42713181--42713318	46	3.0	46	95	0	240	36	8	26	28	1.86
42719319--42719361	20	2.2	20	86	0	59	48	2	6	41	1.43
42721089--42721280	41	4.5	41	67	10	125	28	19	21	29	1.98
42720999--42721280	129	2.2	129	93	0	483	28	20	20	30	1.98
42721291--42721699	100	4.1	99	87	3	520	23	22	22	31	1.98
42721291--42721810	50	10.4	51	74	5	371	23	21	22	31	1.98
42721291--42721749	200	2.3	200	83	3	530	23	22	22	30	1.99
42721670--42721861	100	1.9	100	86	0	276	25	19	20	33	1.97
42721525--42721849	150	2.2	150	84	4	406	23	21	22	32	1.98
42728351--42728388	15	2.5	15	100	0	76	42	10	15	31	1.81
42728348--42728393	15	2.7	18	77	22	62	41	8	15	34	1.78
42728442--42728472	12	2.6	12	100	0	62	61	0	6	32	1.21
42737564--42737625	30	2.1	30	90	0	97	24	3	12	59	1.48
42737749--42737781	11	2.9	12	86	13	52	66	0	0	33	0.92
42739146--42739191	24	1.9	24	82	8	58	69	6	4	19	1.28
42746332--42746356	3	8.3	3	100	0	50	64	0	0	36	0.94
42749096--42749243	74	2.0	73	96	2	271	35	15	25	23	1.94
42750430--42750482	19	2.8	19	94	0	97	37	9	15	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42750689--42750733	23	2.0	23	81	0	54	22	0	15	62	1.33
42750959--42751000	3	13.7	3	85	5	57	28	0	0	71	0.86
42750960--42751000	19	2.2	18	91	4	64	26	0	0	73	0.84
42750959--42751000	22	1.9	22	90	0	66	28	0	0	71	0.86
42756272--42756316	19	2.3	19	85	11	56	80	0	15	4	0.87
42757510--42757740	44	5.2	44	62	4	124	25	26	25	22	2.00
42757371--42757950	88	6.6	88	87	1	820	28	27	23	20	1.99
42757371--42757950	265	2.2	265	88	1	842	28	27	23	20	1.99
42757367--42757939	177	3.2	177	89	1	862	28	27	23	20	1.99
42757947--42758046	44	2.3	45	87	3	150	26	19	24	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214