genome.fa.s25.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  158  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46870842--46870875	14	2.4	14	90	0	50	38	11	0	50	1.39
46882967--46883025	25	2.4	25	100	0	118	71	10	0	18	1.14
46884226--46884321	3	32.0	3	97	0	183	67	0	32	0	0.91
46884745--46884777	16	2.1	16	100	0	66	33	12	24	30	1.91
46885873--46885900	14	2.0	14	100	0	56	42	28	21	7	1.79
46887106--46887152	22	2.2	21	81	11	51	21	6	2	70	1.20
46887211--46887259	20	2.3	21	79	10	55	30	2	6	61	1.32
46887254--46887313	18	3.5	17	78	10	61	38	3	6	51	1.45
46890861--46891150	46	6.6	46	86	8	390	28	22	14	34	1.93
46890996--46891150	82	1.9	82	93	0	265	30	21	12	35	1.90
46903073--46903483	84	4.8	82	71	15	251	29	20	21	28	1.98
46903038--46903453	172	2.4	172	86	3	552	29	19	22	28	1.98
46902852--46903762	89	10.5	87	68	15	422	29	20	22	27	1.98
46903372--46903702	174	1.9	174	80	10	392	29	20	21	27	1.98
46903155--46903715	218	2.6	216	87	3	790	30	20	21	27	1.98
46902854--46903762	44	21.0	43	71	10	408	29	20	22	27	1.98
46903785--46903830	24	1.9	24	95	0	83	34	19	26	19	1.96
46905390--46905420	4	7.8	4	100	0	62	22	0	0	77	0.77
46905389--46905449	8	7.2	8	79	17	52	18	1	1	78	0.91
46905390--46905469	22	3.8	21	76	15	67	21	2	1	75	1.00
46905408--46905493	44	2.0	44	81	4	102	24	2	3	69	1.15
46906612--46906647	18	1.9	18	88	5	54	30	11	13	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46907301--46907437	40	3.5	38	74	6	112	38	18	20	22	1.93
46907473--46907588	41	2.8	41	89	2	171	20	20	31	27	1.98
46907805--46907879	21	3.5	22	71	8	66	29	0	29	41	1.56
46907874--46907936	22	2.9	22	85	4	74	19	0	42	38	1.51
46907967--46908009	11	3.8	12	78	9	54	30	0	0	69	0.88
46907966--46908019	23	2.3	24	84	6	76	37	0	0	62	0.95
46908217--46908257	21	2.0	21	95	0	73	26	0	43	29	1.55
46908214--46908267	21	2.5	20	82	11	72	24	0	42	33	1.55
46912813--46913051	43	5.6	43	87	1	273	26	17	29	26	1.98
46912813--46913037	85	2.6	86	82	2	256	26	17	28	27	1.98
46914863--46914924	22	2.7	22	90	5	88	48	1	1	48	1.21
46914898--46914935	16	2.4	16	91	4	60	50	2	5	42	1.39
46914984--46915155	86	2.0	86	97	0	326	40	5	6	47	1.53
46916116--46916152	6	6.2	6	93	0	65	35	0	64	0	0.94
46916120--46916160	18	2.3	18	87	8	57	41	0	58	0	0.98
46921656--46921690	18	2.1	17	89	10	54	14	37	5	42	1.69
46924100--46924245	77	1.9	77	85	5	206	29	15	15	39	1.88
46924988--46925026	7	5.6	7	96	0	69	30	15	0	53	1.42
46928371--46928461	42	2.2	42	93	0	155	23	25	13	38	1.91
46940733--46940772	21	1.9	21	85	10	55	57	7	17	17	1.62
46940797--46940881	27	2.9	28	78	16	84	40	7	22	30	1.80
46940790--46940900	30	3.8	30	78	13	131	42	5	21	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46941172--46941213	11	3.6	11	81	12	57	35	0	4	59	1.19
46951920--46951971	16	3.2	16	94	0	95	25	1	34	38	1.67
46952207--46952241	18	2.0	17	88	5	52	54	0	0	45	0.99
46952094--46952378	157	1.8	157	93	0	498	43	2	5	48	1.40
46955365--46955390	11	2.4	11	100	0	52	46	7	38	7	1.61
46955643--46955694	16	3.2	16	91	0	77	34	0	28	36	1.58
46955675--46955772	45	2.2	44	81	1	115	37	5	24	32	1.77
46955931--46955965	18	2.0	17	88	5	52	54	0	0	45	0.99
46955889--46955961	27	2.7	27	76	8	76	52	2	0	45	1.15
46956078--46956112	18	2.0	17	88	5	52	54	0	0	45	0.99
46955850--46956124	147	1.9	149	96	1	509	46	3	2	47	1.32
46956093--46956280	61	3.1	61	68	19	185	49	5	2	42	1.41
46956056--46956353	120	2.5	120	92	3	492	50	4	3	42	1.37
46956177--46956222	15	3.0	16	78	9	60	58	0	0	41	0.98
46956171--46956364	54	3.4	54	68	22	144	53	3	3	40	1.32
46957070--46957105	16	2.2	16	100	0	72	19	38	19	22	1.93
46962944--46962996	21	2.5	21	75	0	52	62	0	0	37	0.96
46964915--46964958	18	2.5	17	77	3	52	52	2	4	40	1.34
46969832--46970309	261	1.8	261	84	4	660	39	10	14	35	1.81
46970070--46970850	308	2.6	295	79	7	838	40	9	14	35	1.78
46971435--46971467	17	2.0	17	88	5	50	42	0	0	57	0.98
46972795--46972832	18	2.1	18	90	0	58	42	7	36	13	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46992995--46993056	2	31.0	2	96	0	115	0	1	50	48	1.10
46995868--46995900	16	2.1	16	100	0	66	48	6	6	39	1.53
46996203--46996245	22	2.0	22	85	0	59	32	2	6	58	1.38
46998154--46998203	15	3.3	15	82	2	55	48	44	6	2	1.39
46998139--46998201	25	2.5	26	81	2	74	47	46	4	1	1.33
47001678--47001724	19	2.5	19	86	6	60	25	19	10	44	1.82
47002962--47002998	17	2.1	18	90	5	58	29	24	0	45	1.53
47003749--47003792	16	2.6	17	86	13	65	81	0	15	2	0.78
47003757--47003797	16	2.7	15	88	7	64	78	0	21	0	0.76
47006270--47007055	50	16.0	49	76	7	691	32	21	19	25	1.97
47006207--47007035	100	8.4	99	88	2	1041	32	21	20	26	1.97
47007370--47007419	15	3.3	15	82	2	55	48	44	6	2	1.39
47007355--47007417	25	2.5	26	81	2	74	47	46	4	1	1.33
47010475--47010542	20	3.4	20	72	8	75	29	26	14	29	1.95
47010462--47010549	40	2.2	40	100	0	176	27	27	15	29	1.96
47010491--47010554	20	3.2	20	67	6	58	25	26	18	29	1.98
47013683--47014033	181	2.0	174	84	5	461	29	18	13	38	1.89
47016064--47016102	21	1.9	20	89	5	60	41	28	17	12	1.87
47030966--47033359	920	2.6	926	95	0	4269	32	22	15	29	1.94
47039406--47039439	17	2.0	17	88	11	52	23	26	20	29	1.99
47047836--47048126	144	2.0	143	94	0	510	20	14	10	54	1.69
47050011--47050386	187	2.0	188	96	0	691	31	11	16	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47051287--47051344	22	2.6	22	91	0	98	36	22	18	22	1.95
47051731--47051759	14	2.0	15	93	6	51	51	27	0	20	1.47
47051912--47051957	23	2.0	23	91	0	74	8	47	23	19	1.77
47055265--47055318	19	2.8	20	83	5	67	35	5	18	40	1.74
47059629--47059664	18	2.0	18	100	0	72	16	11	38	33	1.84
47061225--47061338	21	5.5	21	73	1	95	48	15	18	17	1.82
47061246--47061395	42	3.6	42	80	3	151	46	14	20	19	1.84
47064540--47064587	17	2.8	18	84	9	73	31	14	4	50	1.62
47064540--47064588	18	2.8	17	87	6	62	32	14	4	48	1.62
47074249--47074303	30	1.9	28	82	17	69	54	0	1	43	1.10
47075599--47075636	14	2.6	15	83	4	51	52	0	0	47	1.00
47077925--47077949	12	2.1	12	100	0	50	44	0	8	48	1.32
47082039--47082064	3	8.7	3	100	0	52	69	0	0	30	0.89
47092311--47092389	21	3.8	21	72	20	67	46	1	1	50	1.17
47092559--47092630	26	2.7	26	78	4	72	44	25	4	26	1.72
47103658--47103684	12	2.2	12	100	0	54	77	0	7	14	0.97
47103706--47103804	46	2.2	44	81	3	108	50	3	9	37	1.50
47104056--47104098	3	14.3	3	90	0	68	65	2	2	30	1.18
47115729--47115888	81	1.9	84	87	7	236	25	23	21	30	1.99
47115926--47116163	46	5.5	45	72	13	180	27	19	21	31	1.97
47128248--47128274	12	2.2	12	100	0	54	77	0	7	14	0.97
47128343--47128403	32	1.9	32	82	0	77	49	3	11	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47128645--47128687	3	14.3	3	90	0	68	65	2	2	30	1.18
47133894--47133937	19	2.3	19	88	0	61	63	0	2	34	1.07
47150306--47150340	17	2.1	17	88	0	52	42	2	0	54	1.15
47152043--47152090	22	2.2	22	85	7	62	35	10	4	50	1.56
47154177--47154217	20	2.0	21	85	4	57	65	4	2	26	1.25
47155844--47155976	66	2.0	66	82	5	162	36	18	9	34	1.84
47166952--47167016	32	2.1	31	94	5	114	41	9	6	43	1.61
47170353--47170496	34	4.5	32	76	13	93	41	0	11	47	1.39
47170364--47170491	34	3.8	33	76	11	118	41	0	12	46	1.42
47170582--47171229	126	5.2	126	86	1	852	38	16	16	29	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214