genome.fa.s25.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  119  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36032935--36033181	50	4.9	50	83	3	291	25	19	30	23	1.98
36036766--36036815	12	4.1	12	78	14	57	42	0	0	58	0.98
36036995--36037044	25	2.0	24	85	14	66	42	10	12	36	1.76
36040869--36040900	15	2.1	15	94	0	55	15	6	9	68	1.36
36042733--36042864	62	2.1	61	83	8	160	42	4	5	47	1.46
36043800--36043824	12	2.1	12	100	0	50	76	0	8	16	1.02
36044675--36044754	25	2.9	27	83	16	103	42	8	23	25	1.82
36049339--36049425	25	3.1	28	81	15	108	41	6	25	26	1.80
36049336--36049415	25	2.9	27	83	12	110	41	7	25	26	1.81
36052130--36052158	15	1.9	15	100	0	58	20	24	13	41	1.89
36058062--36058286	40	5.7	40	85	5	287	24	21	28	25	1.99
36058062--36058290	119	1.9	119	81	6	266	24	21	27	25	1.99
36073489--36073538	24	2.1	24	96	0	91	36	6	4	54	1.44
36080942--36081004	18	3.8	17	73	21	53	63	11	1	23	1.36
36084088--36084120	16	2.0	17	88	5	50	51	18	3	27	1.60
36085538--36085648	42	2.6	43	81	7	129	29	26	19	24	1.99
36091926--36091958	16	2.0	17	88	5	50	51	18	3	27	1.60
36093477--36093586	42	2.6	43	76	7	98	34	25	16	23	1.95
36097611--36097652	11	3.8	11	90	0	57	26	47	4	21	1.70
36120493--36120560	21	3.2	21	72	12	68	14	17	19	48	1.81
36120554--36120615	21	3.0	21	73	0	61	17	22	19	40	1.91
36120488--36120623	42	3.2	42	82	2	130	16	19	18	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36121472--36121496	13	1.9	13	100	0	50	8	16	40	36	1.77
36125092--36125125	17	2.0	17	94	0	59	29	17	8	44	1.79
36132723--36132841	27	4.4	27	76	4	98	38	17	20	23	1.93
36133153--36133194	21	2.0	21	81	9	50	7	0	47	45	1.30
36137264--36137302	14	2.8	14	80	0	51	43	20	0	35	1.52
36140176--36140214	18	2.1	19	85	4	53	35	0	12	51	1.40
36140776--36140815	15	2.5	17	84	12	57	65	0	0	35	0.93
36145816--36145847	16	2.0	16	93	0	55	31	0	9	59	1.29
36151240--36151367	27	4.7	27	75	3	96	34	16	28	21	1.95
36154778--36154814	6	6.2	6	100	0	74	67	0	32	0	0.91
36175602--36175927	50	6.6	50	80	2	327	27	22	28	21	1.99
36177500--36177550	23	2.2	23	89	0	75	43	21	7	27	1.80
36181639--36181930	49	6.2	46	73	13	182	26	15	26	31	1.96
36181647--36181753	52	2.0	53	87	1	153	25	13	28	33	1.93
36187303--36187335	18	1.9	18	88	11	52	57	12	0	30	1.35
36187557--36187586	15	2.0	15	100	0	60	33	26	13	26	1.93
36195288--36195363	22	3.3	22	64	10	62	31	10	27	30	1.90
36195203--36195521	47	6.7	47	95	1	530	31	8	29	30	1.87
36195639--36195717	37	2.1	37	90	0	122	24	18	31	25	1.98
36196616--36196718	43	2.4	43	96	0	188	23	15	35	25	1.94
36196700--36196773	29	2.6	29	89	4	105	25	16	32	25	1.96
36197164--36197400	40	5.9	40	86	0	303	24	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36197084--36197400	80	4.0	80	84	2	334	24	21	27	25	1.99
36200806--36201178	47	7.9	47	96	2	683	31	8	29	30	1.87
36213478--36213519	22	1.9	22	90	9	68	21	4	30	42	1.73
36213630--36213655	10	2.6	10	100	0	52	53	0	0	46	1.00
36221102--36221223	62	2.0	62	91	0	199	27	22	27	22	1.99
36221164--36221330	50	3.3	49	78	3	181	26	23	27	22	2.00
36221271--36221390	49	2.4	49	80	4	143	30	20	25	24	1.98
36221165--36221390	50	4.5	50	77	2	152	27	21	26	23	1.99
36225476--36225505	15	2.0	15	93	0	51	30	0	23	46	1.52
36231963--36232205	25	9.7	25	76	5	204	33	23	18	25	1.97
36231962--36232205	50	4.9	50	82	2	274	33	23	18	25	1.97
36231963--36232205	100	2.4	100	86	1	308	33	23	18	25	1.97
36246717--36246770	27	2.0	27	82	7	65	44	5	3	46	1.44
36248679--36248936	53	4.8	54	80	4	308	41	19	15	22	1.89
36248662--36248936	80	3.4	81	81	5	333	42	20	14	22	1.89
36248674--36248931	134	1.9	135	86	3	369	41	20	14	22	1.89
36248669--36248936	27	10.0	27	80	4	292	42	20	14	22	1.89
36249099--36249153	26	2.1	26	86	0	74	20	20	25	34	1.96
36251528--36251927	27	14.9	26	82	5	381	41	22	15	20	1.90
36252092--36252172	26	3.1	26	83	0	99	19	20	23	35	1.96
36252276--36252383	28	3.9	28	92	0	171	24	21	24	30	1.99
36252369--36252491	33	3.7	33	92	1	183	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36270339--36270695	29	12.3	29	78	5	200	37	13	27	21	1.91
36270351--36270694	58	5.9	58	77	5	327	38	13	27	21	1.90
36270339--36270684	87	4.0	85	79	9	306	38	12	27	21	1.89
36270383--36270676	146	2.0	146	82	5	355	40	12	27	20	1.88
36270495--36270684	88	2.2	88	84	4	242	40	12	28	19	1.87
36276713--36276779	33	2.0	33	94	5	118	43	11	13	31	1.80
36277755--36277982	29	7.8	29	81	3	233	37	13	28	20	1.91
36283154--36283337	40	4.6	40	83	6	205	23	21	27	27	1.99
36283154--36283334	80	2.3	81	84	9	230	23	21	27	27	1.99
36290806--36290936	40	3.3	40	89	2	201	23	20	27	28	1.99
36290760--36290933	80	2.2	81	84	10	225	24	20	27	27	1.99
36314796--36314823	5	5.6	5	100	0	56	17	0	0	82	0.68
36334892--36334948	27	2.1	27	100	0	114	21	17	24	36	1.94
36337919--36337954	18	2.1	18	89	5	56	13	30	44	11	1.79
36347042--36347066	13	1.9	13	100	0	50	32	20	16	32	1.94
36347612--36347790	27	6.6	27	82	7	184	27	15	27	29	1.96
36347614--36347769	82	1.9	81	86	3	224	27	15	28	28	1.96
36347610--36347790	82	2.2	81	81	2	220	27	14	27	29	1.96
36350151--36350326	46	3.8	45	78	12	187	21	20	29	28	1.98
36350148--36350319	93	1.8	93	92	0	290	21	20	29	27	1.98
36357725--36357900	46	3.8	46	76	12	198	21	21	29	28	1.98
36357722--36357893	93	1.8	93	93	0	299	21	21	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36360527--36360559	17	2.1	16	88	11	50	57	6	6	30	1.47
36362883--36362961	37	2.1	37	90	0	122	25	31	18	24	1.98
36363080--36363349	47	5.7	47	89	0	380	26	30	10	32	1.90
36366240--36366660	40	10.6	40	84	2	422	24	28	22	24	1.99
36366240--36366740	80	6.3	80	82	4	457	25	27	21	24	2.00
36366273--36366660	119	3.2	120	89	2	541	25	27	22	25	2.00
36366273--36366740	119	3.9	119	85	4	473	25	27	22	25	2.00
36366244--36366740	40	12.5	40	82	5	399	25	27	21	24	1.99
36368594--36368672	37	2.1	37	90	0	122	25	31	18	24	1.98
36368791--36368951	47	3.4	47	91	0	250	27	31	8	32	1.87
36368926--36368975	24	2.1	24	96	0	91	30	24	10	36	1.88
36368879--36369022	71	2.0	71	95	0	261	28	27	9	34	1.89
36368842--36369069	118	1.9	118	94	0	402	29	28	8	33	1.87
36368950--36369131	47	3.9	47	88	1	285	28	27	9	34	1.89
36368791--36369110	165	1.9	165	90	0	505	28	29	9	33	1.88
36373448--36374172	291	2.5	291	94	0	1281	40	17	12	29	1.85
36374267--36374341	30	2.6	29	80	6	89	29	2	14	53	1.55
36380151--36380246	48	2.0	48	97	0	183	27	26	18	28	1.98
36382740--36383078	87	4.0	85	81	6	348	31	14	11	42	1.80
36382916--36383071	81	1.9	79	87	2	222	30	14	10	43	1.80
36382916--36383133	81	2.7	81	81	4	197	31	14	11	43	1.80
36384345--36384382	19	2.0	20	85	15	53	39	23	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36390561--36390729	46	3.7	46	76	13	184	28	27	20	22	1.99
36390562--36390732	93	1.8	93	92	0	288	28	28	21	22	1.99
36390559--36390748	46	4.1	46	70	17	126	28	27	20	22	1.99
36393568--36393597	15	2.0	15	93	0	51	40	13	16	30	1.87
36397651--36397812	24	6.8	24	64	6	78	26	14	27	32	1.94
36402028--36402100	29	2.5	28	82	14	87	28	15	30	26	1.96
36402083--36402356	145	1.9	145	96	0	512	29	15	23	31	1.95
36404159--36404188	15	2.0	15	93	0	51	40	13	16	30	1.87
36405208--36405347	43	3.3	43	83	2	165	32	23	15	28	1.95
36407133--36407231	32	3.1	32	92	4	173	30	19	15	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214