genome.fa.s25.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  125  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38145026--38145106	25	3.3	25	78	3	92	32	20	24	22	1.98
38145045--38145106	24	2.5	24	84	7	81	30	22	22	24	1.99
38145025--38145120	49	2.0	49	85	0	129	31	21	25	21	1.98
38151398--38151453	26	2.1	26	83	9	69	51	0	1	46	1.11
38152996--38153483	44	10.9	44	72	14	284	31	18	21	28	1.97
38153135--38153431	41	6.8	41	74	13	177	30	19	21	28	1.97
38152994--38153491	180	2.8	179	90	4	777	31	18	21	28	1.96
38154758--38154947	51	3.8	50	83	6	222	31	27	15	25	1.96
38156321--38156614	44	6.6	42	74	10	198	30	20	20	28	1.98
38156359--38156537	93	1.9	93	80	4	209	30	20	21	27	1.98
38156321--38156579	137	1.9	134	81	5	315	30	19	20	29	1.97
38157152--38157176	13	1.9	13	100	0	50	16	48	16	20	1.82
38158285--38158337	15	3.3	15	73	14	52	32	7	3	56	1.45
38161869--38161951	42	2.0	42	97	0	157	32	8	26	32	1.86
38164031--38164145	41	2.7	44	80	6	130	32	20	20	27	1.97
38164029--38164916	44	19.8	43	71	12	434	30	18	21	28	1.97
38164019--38164919	181	5.0	181	85	3	1080	31	18	21	28	1.97
38164392--38164868	89	5.3	89	73	11	339	30	19	22	27	1.98
38164618--38164919	138	2.2	137	80	4	319	29	20	22	27	1.98
38165203--38165235	15	2.1	16	88	5	50	72	18	3	6	1.18
38165739--38165778	20	2.0	20	90	9	64	60	5	2	32	1.32
38170504--38170528	7	3.6	7	100	0	50	24	0	12	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38172399--38172453	20	2.8	20	84	13	78	52	1	3	41	1.29
38173233--38173317	42	2.0	42	100	0	170	40	18	18	22	1.92
38174144--38174174	16	1.9	16	93	0	53	70	9	9	9	1.33
38178969--38179000	16	2.0	16	100	0	64	31	18	0	50	1.48
38180167--38180203	17	2.2	17	100	0	74	21	27	0	51	1.48
38181709--38181747	18	2.1	18	85	4	51	48	7	0	43	1.31
38182388--38182416	3	9.7	3	100	0	58	68	0	0	31	0.89
38188310--38188363	3	18.0	3	88	0	81	31	3	35	29	1.75
38193385--38193471	41	2.1	42	83	14	110	72	4	3	19	1.17
38193803--38194999	615	1.9	614	84	5	1569	30	21	16	32	1.95
38195288--38195337	24	2.0	27	84	11	70	8	2	16	74	1.15
38201111--38201196	21	4.1	21	82	5	93	44	18	23	13	1.86
38212052--38212085	16	2.1	16	89	10	52	32	2	0	64	1.08
38212922--38212983	31	2.0	31	87	0	88	33	14	11	40	1.82
38214047--38214082	18	1.9	19	88	5	56	33	0	5	61	1.19
38214500--38214534	16	2.2	16	89	0	52	25	5	8	60	1.49
38227567--38227597	2	15.5	2	100	0	62	0	48	0	51	1.00
38231556--38231602	18	2.5	19	79	10	51	57	0	6	36	1.24
38231625--38231664	18	2.2	18	100	0	80	40	0	15	45	1.46
38231721--38231788	3	23.3	3	82	8	70	63	2	0	33	1.10
38232874--38232921	19	2.5	19	83	10	53	12	16	27	43	1.84
38238181--38238220	20	2.0	20	90	0	62	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38245069--38245121	25	2.1	26	82	3	63	60	9	3	26	1.45
38246563--38247069	44	11.8	44	71	9	314	25	20	23	30	1.98
38246563--38246973	85	4.8	85	73	9	316	25	20	23	30	1.98
38246610--38247069	129	3.6	129	93	0	785	25	20	23	30	1.99
38246644--38247062	85	4.9	85	72	12	307	25	21	22	30	1.98
38247078--38247250	44	3.9	44	71	3	123	28	22	18	30	1.97
38248537--38248623	44	2.0	43	88	2	129	13	17	19	49	1.79
38261819--38261888	34	2.1	34	94	0	122	35	34	5	24	1.79
38263083--38263347	76	3.5	75	78	6	266	44	20	17	18	1.87
38263083--38263349	38	7.0	38	78	5	207	44	20	17	17	1.87
38268459--38268548	44	2.0	44	93	0	153	28	21	18	31	1.97
38270470--38270590	50	2.4	52	85	2	174	38	13	14	33	1.85
38271596--38271636	14	3.0	14	82	7	57	24	0	4	70	1.06
38274173--38274220	21	2.3	20	80	16	53	33	6	6	54	1.51
38274374--38274517	49	2.9	50	86	2	209	28	22	28	20	1.99
38274651--38274698	25	1.9	25	95	0	87	52	12	14	20	1.74
38274769--38274807	12	3.2	12	85	0	51	56	5	20	17	1.60
38274770--38274818	20	2.5	20	86	3	73	59	6	22	12	1.55
38275226--38275266	13	3.2	13	96	0	73	24	7	14	53	1.66
38280392--38280536	41	3.5	41	75	7	157	37	24	16	21	1.93
38280433--38280566	43	3.2	43	70	8	130	36	25	17	20	1.94
38280388--38280624	84	2.8	84	89	0	339	37	25	15	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38280624--38280732	41	2.7	41	85	1	157	22	28	19	29	1.98
38290272--38290466	98	2.0	98	93	2	338	36	23	10	28	1.89
38291546--38291597	25	2.2	25	82	6	63	69	3	5	21	1.26
38291894--38291969	21	3.7	21	87	7	120	35	11	10	42	1.76
38291907--38291970	19	3.3	19	88	4	92	35	14	9	40	1.78
38292247--38292342	44	2.2	44	81	7	106	27	22	19	30	1.98
38292260--38293180	132	7.0	132	91	0	1430	26	24	19	29	1.98
38292443--38292900	44	10.4	44	64	14	129	27	25	17	29	1.97
38294422--38294466	8	5.8	8	81	5	56	11	15	2	71	1.24
38298795--38298989	98	2.0	98	92	2	329	36	23	10	28	1.89
38299831--38299883	25	2.2	23	84	15	72	60	5	3	30	1.37
38300071--38300122	25	2.2	25	82	6	63	69	3	5	21	1.26
38300424--38300499	21	3.7	21	87	7	120	35	11	10	42	1.76
38300437--38300500	19	3.3	19	88	4	92	35	14	9	40	1.78
38300821--38301005	44	4.2	44	63	10	108	25	24	21	28	1.99
38300785--38301051	132	2.0	132	90	1	419	24	26	20	28	1.99
38302296--38302340	8	5.8	8	81	5	56	11	15	2	71	1.24
38306661--38306855	98	2.0	98	90	0	309	36	24	9	29	1.86
38308849--38308886	19	2.0	19	100	0	76	26	10	5	57	1.53
38309003--38309034	16	2.0	16	93	0	55	25	15	0	59	1.36
38309253--38309452	51	3.9	51	74	12	205	30	28	17	24	1.97
38309252--38309442	102	1.9	101	86	5	271	29	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38315173--38315378	35	6.1	34	83	6	240	19	21	17	41	1.90
38315172--38315368	67	2.9	67	83	8	238	19	22	17	40	1.91
38315172--38315378	102	2.0	102	90	0	324	19	21	17	42	1.90
38335660--38335704	18	2.5	17	82	13	54	24	4	0	71	1.05
38337927--38338111	79	2.3	81	82	7	218	24	22	27	25	2.00
38337927--38338111	40	4.6	41	82	7	213	24	22	27	25	2.00
38337980--38338144	79	2.1	79	80	6	183	27	20	26	25	1.99
38355142--38355279	42	3.5	43	70	23	138	30	26	21	21	1.98
38355185--38355414	33	6.6	33	69	21	148	33	26	19	19	1.96
38355105--38355316	76	2.8	75	90	2	318	30	26	21	21	1.98
38355105--38355316	75	2.8	76	89	3	313	30	26	21	21	1.98
38355216--38355447	102	2.3	102	92	2	385	32	27	19	20	1.97
38355394--38355446	27	1.9	28	96	3	99	28	30	22	18	1.98
38363874--38363982	37	3.0	37	93	2	177	24	22	16	36	1.94
38363989--38364358	52	7.3	52	83	7	485	27	22	14	35	1.93
38363946--38364364	98	4.3	98	90	5	616	28	22	14	35	1.93
38363946--38364358	150	2.8	144	86	6	574	27	22	14	35	1.93
38370663--38370827	49	3.2	49	80	12	145	29	19	27	23	1.98
38372036--38372169	44	3.0	45	83	4	162	35	13	23	27	1.93
38378402--38378535	44	3.0	45	83	4	162	35	13	23	27	1.93
38381372--38381424	19	2.8	20	77	13	58	30	22	3	43	1.71
38388035--38388065	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38388118--38388154	9	4.1	9	92	0	65	45	13	10	29	1.77
38390578--38390932	90	3.9	89	76	12	325	30	17	21	30	1.96
38390566--38390972	94	4.4	94	77	13	375	30	18	20	30	1.97
38390709--38391005	44	6.6	44	73	13	203	31	19	19	28	1.97
38390674--38391003	182	1.8	182	86	3	477	31	18	20	30	1.96
38393117--38393189	26	2.8	26	73	8	67	34	24	4	36	1.75
38394691--38395108	207	2.0	207	96	0	764	32	18	6	42	1.75
38396544--38396593	24	2.3	21	76	23	59	40	12	14	34	1.82
38396553--38396598	24	1.9	24	100	0	92	43	10	13	32	1.78
38398922--38399003	42	2.0	42	88	9	123	43	9	21	24	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214