genome.fa.s25.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  146  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43718567--43718717	78	1.9	78	89	2	232	45	5	7	41	1.54
43724101--43724157	29	2.0	29	82	0	69	26	14	8	50	1.71
43729293--43729330	19	2.0	19	100	0	76	36	5	21	36	1.76
43730221--43730339	47	2.5	47	78	5	123	54	3	3	38	1.34
43733211--43733235	12	2.1	12	100	0	50	24	0	16	60	1.36
43734357--43734483	59	2.1	61	81	8	154	19	24	7	48	1.76
43736932--43737019	44	2.0	44	97	0	167	31	28	9	30	1.88
43744408--43744450	22	2.0	21	86	13	61	34	0	0	65	0.93
43744401--43744475	38	2.0	38	84	10	100	34	1	0	64	1.02
43752289--43752348	29	2.1	29	90	0	93	41	5	6	46	1.52
43765674--43765733	31	1.9	31	93	0	102	50	10	1	38	1.46
43766342--43766418	38	2.0	38	100	0	154	41	5	10	42	1.61
43772154--43772195	3	14.0	3	89	0	66	66	4	0	28	1.12
43776482--43776529	24	2.0	24	88	4	71	27	2	6	64	1.28
43776530--43776556	9	3.0	9	100	0	54	55	0	0	44	0.99
43776937--43776986	25	2.0	25	88	4	73	74	2	2	22	1.03
43777056--43777086	2	15.5	2	100	0	62	0	51	0	48	1.00
43785032--43785059	13	2.2	13	100	0	56	46	10	21	21	1.81
43801109--43801223	57	1.9	59	82	8	144	41	4	4	49	1.42
43806137--43806174	13	2.9	14	80	11	53	18	13	15	52	1.74
43814652--43814931	46	6.6	45	86	10	330	35	14	21	28	1.93
43814688--43814796	36	3.0	36	97	0	200	37	12	20	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43814716--43814781	21	3.5	20	63	25	52	34	12	19	33	1.89
43816686--43816738	26	2.0	26	96	0	97	54	16	3	24	1.59
43823243--43823294	15	3.5	15	71	7	52	65	0	0	34	0.93
43826426--43826509	25	3.4	25	84	0	114	21	26	19	33	1.97
43826425--43826540	25	4.6	25	80	4	108	23	25	20	31	1.98
43828158--43828274	62	1.9	59	84	8	155	50	5	2	41	1.38
43828259--43828313	25	2.2	25	81	12	60	49	5	1	43	1.36
43828615--43828656	20	2.2	19	83	12	50	11	14	26	47	1.78
43828771--43828797	14	1.9	14	100	0	54	37	11	0	51	1.37
43829907--43829938	15	2.1	15	94	0	55	68	9	6	15	1.36
43833126--43833199	31	2.4	31	83	0	94	54	10	2	32	1.49
43835038--43835070	14	2.3	15	89	5	50	69	0	0	30	0.88
43835672--43836257	294	2.0	294	97	0	1100	26	30	10	32	1.90
43838294--43838341	21	2.2	21	85	3	60	35	22	16	25	1.95
43841180--43841243	24	2.7	24	90	2	94	43	18	17	20	1.88
43841283--43841349	25	2.8	23	71	13	64	32	19	26	20	1.97
43841336--43841400	26	2.6	25	78	11	69	36	27	20	15	1.92
43841187--43841405	24	8.9	25	68	13	93	36	21	22	19	1.95
43841912--43841952	16	2.6	16	85	11	57	0	17	9	73	1.09
43844590--43844679	36	2.4	39	80	10	91	31	23	2	43	1.66
43845898--43845935	3	13.3	3	83	10	53	63	2	0	34	1.09
43850736--43850794	30	2.0	30	96	0	109	38	0	30	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43853445--43853507	28	2.2	29	88	8	94	46	15	15	22	1.84
43853641--43853830	93	2.0	93	81	9	219	48	15	9	25	1.75
43855782--43855839	22	2.7	21	82	10	80	44	18	3	32	1.67
43858565--43858611	24	2.0	24	95	0	85	23	31	12	31	1.92
43858565--43858624	24	2.5	24	86	5	68	21	28	15	35	1.93
43862670--43862694	13	1.9	13	100	0	50	32	8	20	40	1.81
43866565--43866606	21	2.0	21	85	4	57	57	2	9	30	1.44
43871359--43871383	9	2.8	9	100	0	50	84	16	0	0	0.63
43871868--43872008	58	2.4	59	83	4	169	43	17	19	19	1.89
43871837--43871961	31	4.2	31	68	15	82	37	19	20	22	1.94
43873226--43873278	27	2.0	27	100	0	106	43	7	7	41	1.61
43877197--43877231	18	1.9	18	94	0	61	40	28	5	25	1.78
43881911--43881951	18	2.3	18	82	0	55	46	0	9	43	1.36
43884911--43885018	45	2.4	44	86	3	153	27	25	14	32	1.95
43885116--43885555	132	3.3	131	90	2	668	29	25	17	27	1.98
43886019--43886058	21	1.9	21	85	10	55	62	25	2	10	1.39
43889253--43889333	6	13.5	6	100	0	162	17	32	34	16	1.92
43892051--43892183	70	1.9	67	84	4	176	43	7	10	38	1.67
43895733--43895864	50	2.6	50	79	2	131	26	20	28	25	1.99
43902093--43902221	50	2.6	50	81	0	150	21	28	21	27	1.99
43910683--43910744	31	2.1	29	76	21	67	50	0	1	48	1.10
43916946--43917055	33	3.4	34	81	7	115	42	4	0	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43916967--43917106	31	4.4	33	77	15	143	40	5	0	55	1.22
43917011--43917089	9	8.1	9	72	22	54	41	2	0	55	1.13
43917016--43917096	20	4.2	19	72	20	69	41	2	0	55	1.13
43917011--43917126	27	4.1	29	78	15	93	42	3	0	54	1.17
43917017--43917128	31	3.9	29	78	15	92	42	3	0	53	1.18
43916963--43917106	59	2.3	66	76	18	162	40	4	0	54	1.22
43917866--43917896	16	2.0	15	93	6	53	70	0	0	29	0.87
43919404--43919458	23	2.3	23	81	3	65	49	1	1	47	1.23
43922745--43922785	13	3.2	13	77	19	50	70	0	0	29	0.87
43925436--43925552	41	2.9	41	81	0	135	22	22	23	31	1.98
43928955--43929032	41	1.9	41	84	5	104	19	26	17	35	1.94
43932960--43932991	16	2.0	16	93	0	55	6	40	12	40	1.68
43934530--43934636	21	5.2	20	72	12	56	42	15	24	16	1.87
43934537--43934691	42	3.7	42	76	6	143	45	15	21	17	1.85
43934611--43934686	21	3.6	21	71	7	64	47	14	19	18	1.83
43936509--43936548	9	4.3	9	83	3	53	55	2	2	40	1.27
43951846--43951885	14	2.8	13	88	11	53	22	0	7	70	1.12
43962239--43962296	21	2.7	22	81	7	66	29	1	5	63	1.25
43962230--43962297	28	2.4	28	85	4	84	29	1	4	64	1.21
43963403--43963445	19	2.3	19	84	8	52	32	2	0	65	1.06
43966400--43966502	41	2.5	41	88	0	161	23	27	22	27	1.99
43968449--43968507	24	2.6	23	86	7	77	55	1	6	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43969560--43969594	15	2.3	15	95	0	61	14	8	42	34	1.76
43970138--43970569	132	3.3	131	86	1	596	25	22	20	31	1.98
43970531--43971229	88	7.9	87	88	1	952	27	24	19	27	1.99
43971081--43971223	44	3.2	44	64	7	110	28	23	23	23	1.99
43971235--43971283	25	1.9	26	91	4	82	30	0	18	51	1.47
43972032--43972070	16	2.4	16	100	0	78	35	0	5	58	1.20
43973880--43973907	14	2.0	14	100	0	56	42	21	21	14	1.88
43975249--43975326	27	2.9	27	82	3	86	20	33	24	21	1.97
43976968--43977026	31	1.9	31	89	0	91	30	11	13	44	1.80
43978208--43978241	14	2.5	14	95	4	61	14	0	35	50	1.44
43978367--43978413	22	2.1	23	84	4	60	70	4	4	21	1.22
43981451--43981488	14	2.8	14	88	4	51	42	23	7	26	1.81
43987953--43987995	3	14.3	3	100	0	86	34	0	32	32	1.58
43988536--43988580	22	2.0	23	86	4	65	57	6	2	33	1.37
43995283--43995323	3	13.7	3	100	0	82	31	0	0	68	0.90
44000224--44000291	31	2.3	30	82	5	84	44	13	11	30	1.79
44002159--44002219	30	2.1	29	84	3	77	37	3	3	55	1.32
44004689--44004732	19	2.2	20	88	11	65	70	0	4	25	1.06
44007558--44007759	89	2.3	87	82	9	225	37	24	8	30	1.85
44007762--44007802	22	2.0	20	85	9	55	73	0	2	24	0.96
44007986--44008141	20	7.8	20	68	15	81	28	5	2	62	1.31
44008099--44008152	18	2.8	18	83	8	63	22	5	1	70	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44008023--44008134	45	2.7	39	79	14	109	30	5	3	60	1.36
44008088--44008161	20	3.8	20	71	18	57	27	4	1	67	1.16
44008069--44008185	39	3.0	38	76	9	94	29	3	1	65	1.18
44008143--44008195	26	2.0	27	88	3	81	39	0	0	60	0.97
44008243--44008457	85	2.4	87	89	6	310	28	7	22	41	1.81
44008588--44008637	24	2.1	24	92	0	82	46	8	30	16	1.75
44015472--44015636	47	3.5	47	83	1	170	24	24	15	35	1.94
44016674--44016698	2	12.5	2	100	0	50	52	0	0	48	1.00
44017246--44017332	44	2.0	44	90	0	138	54	3	8	34	1.47
44017303--44017336	17	1.9	17	88	5	50	64	2	0	32	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214