genome.fa.s25.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  152  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45242554--45242607	25	2.1	26	83	10	67	29	1	0	68	1.00
45245185--45245465	124	2.3	125	84	4	363	28	14	23	32	1.95
45246523--45246562	17	2.4	17	95	0	71	17	27	30	25	1.97
45247193--45247248	28	2.0	29	92	3	96	60	3	0	35	1.14
45247291--45247332	22	1.9	22	90	0	66	33	0	33	33	1.58
45247304--45247362	30	2.0	30	93	0	100	33	0	35	30	1.58
45247282--45247384	52	2.0	51	85	9	138	34	0	33	32	1.58
45247334--45247401	22	3.1	21	85	8	91	39	0	29	30	1.57
45251474--45251635	81	2.0	81	100	0	324	37	9	37	16	1.81
45252800--45252836	13	2.8	13	83	0	56	18	0	0	81	0.70
45261662--45261711	26	1.9	26	83	0	64	16	46	22	16	1.84
45262448--45262480	15	2.3	15	89	5	50	18	6	6	69	1.30
45262561--45262602	19	2.2	20	82	4	50	30	7	11	50	1.66
45263165--45263237	14	5.5	13	73	15	51	60	1	2	35	1.20
45263172--45263266	40	2.3	40	92	1	163	58	1	3	36	1.21
45263223--45263248	11	2.4	11	100	0	52	53	0	7	38	1.30
45264197--45264305	41	2.7	41	91	2	175	22	30	19	27	1.98
45264197--45264354	82	1.9	81	83	10	205	24	27	18	29	1.98
45264197--45264355	41	3.9	41	82	8	157	24	27	18	29	1.98
45264549--45264627	34	2.3	34	80	8	81	39	17	3	39	1.68
45271665--45271814	41	3.7	41	90	1	230	24	28	18	28	1.98
45271664--45271863	82	2.4	82	82	8	239	24	27	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45272058--45272136	34	2.3	34	80	8	81	39	17	3	39	1.68
45273544--45273580	9	4.1	9	92	0	65	45	13	10	29	1.77
45277705--45277797	31	3.0	31	70	9	82	41	6	13	37	1.71
45277694--45277821	61	2.1	61	84	5	161	37	5	14	42	1.68
45279855--45279887	16	2.0	17	94	5	59	0	15	0	84	0.61
45285686--45285749	32	2.0	32	93	0	110	39	10	26	23	1.88
45289154--45289211	29	2.0	29	100	0	116	24	27	17	31	1.97
45292115--45292142	7	4.0	7	100	0	56	28	0	0	71	0.86
45301173--45301268	9	10.4	9	78	12	106	35	31	8	25	1.85
45301229--45301266	20	1.9	20	94	0	67	39	28	10	21	1.86
45302028--45302067	16	2.5	16	95	0	71	25	5	35	35	1.78
45309632--45309670	20	2.0	20	84	0	51	17	5	2	74	1.12
45311897--45311964	29	2.3	29	87	5	91	42	19	14	23	1.88
45311797--45312058	91	2.9	91	82	3	260	40	14	14	30	1.86
45316048--45316562	170	3.0	170	96	0	958	25	16	17	40	1.90
45316845--45316888	20	2.2	21	80	12	56	56	6	0	36	1.26
45317540--45317597	18	3.1	19	78	9	57	77	1	12	8	1.06
45318002--45318058	27	2.1	28	90	3	89	42	10	0	47	1.38
45318048--45318098	25	2.0	26	84	3	68	80	5	3	9	1.01
45318226--45318402	18	10.0	17	71	18	71	64	0	34	0	0.98
45318228--45318376	10	15.1	10	71	12	58	66	0	32	0	0.97
45318259--45318350	5	19.0	5	76	9	61	63	0	35	1	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45318235--45318370	28	4.8	28	72	16	77	66	0	33	0	0.97
45318240--45318403	38	4.3	38	80	6	172	65	0	34	0	0.98
45319077--45319127	18	2.7	19	81	6	59	25	0	7	66	1.18
45319163--45319228	26	2.5	27	90	4	109	43	10	0	45	1.38
45319229--45319262	17	2.0	17	94	0	59	85	5	2	5	0.83
45321101--45321147	24	2.0	24	95	0	85	53	0	8	38	1.32
45322455--45322494	13	3.1	13	77	0	53	35	25	7	32	1.84
45322763--45322842	17	4.5	17	67	26	51	45	1	2	51	1.22
45334051--45334089	18	2.1	19	85	4	53	33	0	0	66	0.92
45339264--45339293	14	2.1	14	93	0	51	23	13	13	50	1.77
45340388--45340468	40	2.0	40	100	0	162	35	19	4	39	1.74
45341177--45341249	24	3.0	24	75	13	69	35	21	24	17	1.95
45341405--45341445	19	2.1	19	86	4	55	39	7	4	48	1.52
45347319--45347356	16	2.2	18	90	9	62	39	10	5	44	1.61
45348441--45348593	76	2.0	76	97	0	288	36	12	11	39	1.80
45353530--45353794	132	2.0	132	98	0	512	20	14	18	47	1.82
45355136--45355198	21	3.0	21	90	0	99	17	15	49	17	1.80
45356064--45356126	33	1.9	33	100	0	126	38	7	30	23	1.84
45356135--45356321	93	2.0	93	98	0	365	19	19	19	41	1.90
45356470--45356501	16	2.1	16	88	11	50	46	6	9	37	1.61
45356623--45356675	20	2.7	20	94	5	90	35	0	5	58	1.22
45356790--45356834	23	2.0	23	91	8	74	26	8	17	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45366475--45366635	46	3.6	46	94	3	267	28	22	15	32	1.95
45374995--45375036	19	2.2	19	83	8	50	52	0	4	42	1.22
45382651--45382703	27	2.0	27	84	0	70	22	28	30	18	1.98
45384852--45384984	60	2.2	60	93	1	221	55	10	0	33	1.39
45385068--45385123	13	4.2	13	76	15	60	0	30	0	69	0.89
45385073--45385124	27	1.9	27	85	14	72	0	34	0	65	0.93
45405153--45405219	34	1.9	35	87	3	100	31	8	14	44	1.76
45406214--45406240	13	2.1	13	100	0	54	22	29	22	25	1.99
45409339--45409366	7	4.0	7	100	0	56	14	0	0	85	0.59
45409918--45409957	9	4.8	9	84	12	50	50	0	0	50	1.00
45415777--45415899	44	2.8	44	81	7	153	24	17	26	31	1.97
45418570--45418599	13	2.2	14	94	5	53	43	0	6	50	1.28
45427313--45427471	26	6.4	26	69	13	102	18	19	22	39	1.92
45432212--45432360	76	2.0	76	82	7	187	36	6	18	38	1.77
45432538--45432616	41	1.9	41	82	5	97	22	17	25	34	1.96
45436612--45436686	26	3.0	26	75	7	68	49	32	1	17	1.55
45436816--45436935	41	2.9	40	77	7	107	45	32	3	19	1.67
45436876--45437059	14	13.7	14	67	12	66	46	31	1	20	1.60
45436921--45437050	27	5.0	28	69	17	84	46	32	0	20	1.57
45437519--45437568	19	2.6	19	87	9	75	38	48	0	14	1.44
45443412--45443448	3	12.7	3	94	5	67	35	29	0	35	1.58
45443447--45443483	3	12.3	3	100	0	74	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45450647--45451514	50	17.5	50	67	9	332	35	22	18	23	1.96
45450628--45451514	100	9.0	100	82	6	1034	34	22	19	22	1.96
45450569--45451352	391	2.0	391	97	0	1478	34	23	18	23	1.96
45452964--45452993	3	10.0	3	100	0	60	33	0	0	66	0.92
45458644--45458681	17	2.1	19	85	9	53	44	7	5	42	1.56
45464197--45464229	16	2.1	16	94	0	57	42	3	6	48	1.43
45482680--45482744	21	3.1	21	90	0	103	21	24	13	40	1.90
45483314--45483364	4	12.8	4	100	0	102	25	0	23	50	1.49
45485502--45485534	5	6.4	5	96	3	57	45	0	0	54	0.99
45502022--45502060	21	1.9	21	89	5	62	61	0	5	33	1.18
45502175--45502251	39	1.9	39	87	10	111	27	11	2	58	1.46
45503556--45503683	17	6.9	17	69	21	62	35	1	0	62	1.10
45503577--45503697	38	3.2	37	84	4	154	33	1	0	64	1.09
45503568--45503676	38	2.8	39	87	2	166	33	1	0	63	1.11
45503632--45503701	28	2.4	30	80	7	90	35	1	0	62	1.04
45503623--45503685	10	6.4	10	75	18	53	34	1	0	63	1.04
45503623--45503661	11	3.5	11	90	10	62	41	2	0	56	1.13
45503670--45503695	11	2.4	11	100	0	52	15	0	0	84	0.62
45503562--45503690	39	3.3	39	75	10	138	33	1	0	64	1.09
45504335--45504385	16	3.1	16	78	15	59	60	0	1	37	1.08
45507053--45507083	15	2.1	14	94	5	53	48	6	0	45	1.28
45519244--45519272	3	9.7	3	100	0	58	34	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45520908--45520999	45	2.0	45	95	0	166	33	8	21	35	1.84
45522401--45522640	51	4.7	51	81	6	281	29	13	26	30	1.94
45522397--45522640	102	2.4	102	90	2	409	29	14	26	29	1.95
45522832--45522904	37	1.9	38	86	2	103	42	2	23	31	1.68
45525061--45525105	23	2.0	23	86	8	65	51	4	0	44	1.21
45529360--45529463	54	1.9	53	81	9	122	27	25	26	20	1.99
45532588--45532651	30	2.1	31	94	2	112	26	28	6	39	1.80
45532598--45532644	15	3.1	15	70	11	51	27	23	8	40	1.83
45537224--45537312	30	3.1	30	81	14	98	26	24	5	42	1.77
45537235--45537314	25	2.9	29	81	16	114	26	22	6	45	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214