genome.fa.s25.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  175  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51421193--51421234	22	1.9	22	90	0	66	33	0	33	33	1.58
51423235--51423282	22	2.1	23	84	3	62	35	56	4	4	1.38
51423613--51423712	27	3.8	26	76	12	87	34	11	18	37	1.86
51424408--51424450	19	2.3	19	80	11	54	51	0	4	44	1.22
51426671--51426697	5	5.4	5	100	0	54	40	0	0	59	0.98
51427057--51427091	19	1.9	17	88	11	52	8	14	28	48	1.73
51428084--51428141	21	2.8	20	89	5	82	43	18	25	12	1.85
51430847--51430931	17	5.2	16	68	17	50	38	3	3	54	1.35
51430840--51430964	48	2.6	49	84	5	155	39	3	4	53	1.36
51439289--51439313	13	1.9	13	100	0	50	32	0	4	64	1.12
51439408--51439446	18	2.2	19	86	9	55	48	0	0	51	1.00
51439660--51439728	13	4.8	13	70	19	57	42	7	4	46	1.51
51439679--51439775	23	4.3	23	75	12	101	41	5	9	44	1.59
51439647--51439752	45	2.4	45	98	0	203	40	5	7	46	1.56
51440211--51440253	22	2.0	22	95	0	77	9	20	27	41	1.83
51440314--51440627	129	2.4	130	82	2	355	28	30	18	22	1.98
51440314--51440627	43	7.3	43	80	1	299	28	30	18	22	1.98
51445535--51445594	10	5.7	11	75	18	56	46	5	0	48	1.24
51445528--51445602	29	2.5	29	81	12	82	48	5	1	45	1.33
51445528--51445600	30	2.4	30	82	8	87	49	4	1	45	1.29
51445535--51445597	20	3.1	20	77	11	74	44	4	0	50	1.23
51446913--51447273	104	3.5	104	88	2	519	32	29	19	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51447602--51447661	30	1.9	31	83	6	77	31	23	6	38	1.81
51449691--51449798	41	2.6	41	92	0	180	28	24	24	23	1.99
51454052--51454107	20	2.7	21	81	13	53	69	7	12	10	1.36
51454063--51454107	21	2.1	23	88	12	69	68	8	8	13	1.38
51456906--51457001	35	2.8	35	82	1	104	42	14	21	20	1.88
51457400--51457468	27	2.6	27	93	2	122	44	10	0	44	1.37
51457515--51457572	27	2.1	27	90	0	89	29	29	29	12	1.93
51457670--51457710	10	3.9	11	81	9	50	68	0	31	0	0.90
51457839--51457876	3	12.7	3	100	0	76	0	0	31	68	0.90
51458669--51458706	18	2.1	18	90	0	58	34	7	44	13	1.72
51463432--51463466	13	2.7	13	86	0	52	25	0	0	74	0.82
51463727--51463778	27	1.9	27	96	0	95	7	36	13	42	1.73
51464534--51464682	22	6.9	23	65	20	72	0	31	0	67	0.95
51464523--51464682	19	7.8	21	69	21	74	0	32	0	66	0.96
51464558--51464674	4	29.2	4	73	20	61	0	30	0	68	0.96
51464544--51464686	57	2.6	55	79	13	136	0	34	0	65	0.98
51464544--51464649	10	10.4	10	72	20	69	0	30	0	68	0.96
51464559--51464650	35	2.8	34	82	14	113	1	28	0	70	0.94
51464618--51464683	22	3.0	22	86	10	82	0	37	0	62	0.96
51464530--51464681	81	1.9	80	83	6	198	0	31	0	67	0.95
51464797--51464837	20	2.0	20	95	0	73	58	0	7	34	1.26
51465117--51465163	22	2.0	24	84	8	62	46	4	0	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51466661--51466694	17	2.1	17	94	5	61	38	0	11	50	1.39
51476266--51476290	5	5.0	5	100	0	50	40	40	0	20	1.52
51478059--51478145	28	3.1	28	71	17	81	51	9	16	22	1.72
51480309--51480385	35	2.2	35	97	0	145	35	29	10	24	1.89
51483425--51483754	47	6.9	47	91	2	507	32	8	30	29	1.87
51483425--51483752	96	3.5	96	91	2	529	32	8	29	29	1.87
51483425--51483754	143	2.3	141	92	2	525	32	8	30	29	1.87
51483873--51483951	37	2.1	37	90	0	122	26	18	29	25	1.98
51486484--51486659	47	3.7	47	89	1	246	27	31	9	31	1.88
51488871--51488940	27	2.6	27	95	2	113	31	28	12	27	1.93
51488871--51488968	28	3.5	28	90	2	135	31	28	13	26	1.94
51496966--51497373	47	8.6	47	92	2	636	29	29	8	32	1.87
51496966--51497373	96	4.3	94	91	3	636	29	29	8	32	1.87
51496966--51497374	192	2.2	192	94	1	727	29	29	8	32	1.86
51501095--51501172	37	2.1	37	85	4	104	25	29	17	26	1.98
51502371--51502611	41	5.9	41	81	3	254	21	16	29	32	1.95
51502978--51503040	21	3.0	20	82	13	56	20	0	42	36	1.52
51503010--51503062	7	7.4	7	78	4	61	20	1	45	32	1.62
51503003--51503062	21	2.8	22	90	5	88	21	1	43	33	1.63
51503139--51503203	29	2.2	29	86	0	94	23	1	36	38	1.64
51503072--51503204	7	18.7	7	72	11	65	21	2	34	42	1.65
51503126--51503205	14	5.5	15	79	4	76	22	1	38	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51516788--51516844	5	11.4	5	100	0	114	40	0	0	59	0.97
51516866--51516950	13	7.2	11	72	25	59	68	4	24	2	1.21
51516907--51516945	14	3.0	13	85	10	53	69	0	30	0	0.89
51516880--51516951	25	2.9	24	80	10	74	68	5	25	1	1.20
51530566--51530624	30	2.0	30	83	6	75	55	1	8	33	1.40
51534722--51534756	15	2.4	15	90	4	54	40	0	0	60	0.97
51535216--51535300	33	2.6	33	81	14	104	43	0	1	55	1.07
51535250--51535318	24	2.8	25	89	6	115	43	0	0	56	0.99
51538156--51538188	12	2.8	12	90	4	50	84	0	15	0	0.61
51538155--51538188	18	1.9	17	88	5	50	85	0	14	0	0.60
51547018--51547057	15	2.7	16	85	11	50	12	10	0	77	0.99
51551469--51551672	73	2.8	72	88	1	291	23	18	25	32	1.97
51552896--51552967	36	2.0	36	91	0	117	38	8	9	43	1.68
51557594--51557621	3	9.3	3	100	0	56	64	0	0	35	0.94
51567288--51567389	40	2.5	40	85	3	125	25	14	22	37	1.92
51567317--51567474	41	3.9	41	81	3	176	27	13	25	33	1.94
51567318--51567478	81	2.0	83	86	4	229	27	14	25	32	1.94
51568728--51568763	18	2.0	18	94	0	63	47	0	13	38	1.44
51568730--51568768	18	2.2	18	86	4	53	48	0	15	35	1.45
51572858--51572900	9	4.8	9	97	0	68	44	16	11	27	1.82
51573426--51573454	9	3.2	9	100	0	58	31	0	0	68	0.89
51575078--51575129	26	2.0	26	88	0	77	0	28	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51575077--51575140	26	2.7	22	76	17	65	1	25	0	73	0.92
51578780--51578823	21	2.1	21	87	8	63	59	11	0	29	1.32
51586698--51586884	91	2.1	91	98	0	365	13	24	16	45	1.83
51593424--51593474	24	2.1	24	82	7	59	39	13	23	23	1.91
51596041--51596190	41	3.5	43	75	14	141	27	18	27	26	1.98
51598279--51598543	103	2.6	104	91	0	415	30	30	20	19	1.97
51598871--51598935	30	2.2	29	81	8	76	30	27	6	35	1.81
51598878--51598935	30	1.9	30	85	0	80	31	24	6	37	1.82
51608381--51608508	68	1.9	68	86	0	184	20	25	16	38	1.93
51611768--51611806	17	2.4	16	87	8	60	23	0	7	69	1.14
51623730--51623771	21	2.0	22	85	4	59	35	0	11	52	1.38
51624156--51624298	24	5.8	24	73	8	101	18	25	20	34	1.96
51625460--51625510	26	1.9	27	88	4	77	21	33	31	13	1.92
51635730--51635978	50	4.8	50	84	3	300	21	29	22	26	1.99
51644319--51644431	25	4.6	24	73	10	86	18	23	24	32	1.97
51644435--51644490	24	2.3	24	79	11	69	16	23	19	41	1.90
51667045--51667182	48	2.9	48	90	0	204	37	18	16	27	1.92
51668602--51668892	24	12.6	22	75	15	234	26	14	18	40	1.89
51668602--51668892	46	6.3	46	93	0	492	26	14	18	40	1.89
51673571--51673809	41	5.8	41	88	4	297	28	20	24	27	1.99
51673581--51673809	123	1.9	123	86	7	331	27	19	24	27	1.99
51681209--51681447	41	5.8	41	88	4	297	28	20	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51681219--51681447	123	1.9	123	86	7	331	27	19	24	27	1.99
51685747--51685835	40	2.2	40	85	0	115	26	15	22	34	1.94
51685768--51685904	41	3.4	41	85	3	179	24	16	27	32	1.96
51687709--51688005	50	5.8	50	81	6	285	22	27	22	27	1.99
51689351--51689457	46	2.3	46	90	1	160	27	14	16	42	1.87
51689353--51689440	24	3.8	24	75	11	92	26	14	17	42	1.87
51689379--51689458	24	3.5	22	79	14	90	28	15	16	40	1.88
51697113--51697191	24	3.4	24	64	28	62	40	7	20	31	1.80
51697095--51697190	45	2.1	45	98	0	183	44	6	17	31	1.74
51699381--51699412	2	16.0	2	93	0	55	0	46	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214