genome.fa.s25.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  116  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35311788--35311840	19	2.9	18	78	16	65	60	0	9	30	1.28
35316304--35316332	12	2.3	13	94	5	51	27	6	0	65	1.18
35328341--35328381	22	2.0	22	85	9	59	58	2	2	36	1.24
35329036--35329092	21	2.7	21	76	10	71	33	15	14	36	1.88
35331576--35331749	44	3.9	44	81	5	190	44	14	18	22	1.86
35335600--35335662	17	3.5	17	69	12	54	49	11	3	36	1.54
35335796--35335873	38	2.0	39	95	2	140	17	2	28	51	1.59
35335854--35335878	13	1.9	13	100	0	50	12	0	48	40	1.40
35345368--35345431	25	2.6	25	92	0	101	51	18	0	29	1.47
35345384--35345430	9	5.4	9	82	10	62	55	19	0	25	1.43
35345586--35345692	15	6.8	15	72	17	74	57	19	1	21	1.51
35345586--35345692	31	4.0	28	76	19	111	57	19	1	21	1.51
35345459--35345628	79	2.2	78	80	12	195	50	20	5	23	1.69
35345616--35345695	21	3.5	22	83	13	83	57	18	1	22	1.48
35345790--35345858	31	2.3	29	83	9	93	62	5	10	21	1.48
35345884--35345992	55	1.9	58	81	9	136	50	19	7	22	1.72
35360313--35360484	40	4.3	40	95	2	294	25	20	27	27	1.99
35360299--35360484	79	2.3	79	90	4	295	25	20	26	26	1.99
35368210--35368434	40	5.7	40	90	5	307	25	21	27	26	1.99
35368210--35368467	120	2.2	119	82	8	294	26	20	27	25	1.99
35375514--35375580	28	2.4	29	85	5	84	32	1	41	23	1.64
35375521--35375570	19	2.6	19	93	0	82	28	2	42	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35375514--35375580	9	7.2	9	80	11	73	32	1	41	23	1.64
35381306--35381516	27	7.9	26	82	5	217	18	18	21	41	1.91
35381306--35381516	54	3.9	53	84	3	253	18	18	21	41	1.91
35381306--35381516	81	2.6	79	83	5	244	18	18	21	41	1.91
35383838--35383905	29	2.3	29	82	5	84	27	29	13	29	1.94
35384012--35384079	29	2.3	29	85	5	93	27	30	13	27	1.94
35384186--35384253	29	2.3	29	85	5	93	27	30	13	27	1.94
35384355--35384433	29	2.7	30	82	13	110	29	30	15	25	1.96
35383727--35384402	174	3.9	174	98	0	1280	31	24	14	29	1.94
35392330--35392397	29	2.3	29	82	5	84	27	29	13	29	1.94
35392219--35392837	174	3.6	174	98	0	1175	31	24	14	30	1.94
35392504--35392571	29	2.3	29	85	5	93	27	30	13	27	1.94
35392678--35392745	29	2.3	29	85	5	93	27	30	13	27	1.94
35392823--35392897	29	2.6	30	85	12	111	28	29	14	28	1.95
35401038--35401071	12	2.8	12	81	0	50	44	23	23	8	1.81
35403311--35403352	5	8.8	5	86	5	52	85	0	11	2	0.68
35403311--35403353	18	2.4	17	88	11	68	86	0	11	2	0.67
35403311--35403353	23	1.9	22	95	4	77	86	0	11	2	0.67
35403628--35403829	108	1.9	108	89	0	314	29	16	7	46	1.74
35404297--35404351	24	2.3	24	87	6	76	34	14	21	29	1.93
35404985--35405284	44	6.8	44	67	11	166	28	19	26	26	1.99
35404680--35405652	219	4.5	219	92	1	1537	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35405118--35405281	88	1.9	88	84	3	206	26	18	27	26	1.98
35405423--35405531	44	2.4	43	82	7	112	26	16	28	28	1.97
35407576--35407673	48	2.0	52	82	11	125	39	9	1	50	1.41
35407891--35407929	18	2.1	18	85	4	51	23	2	2	71	1.10
35410419--35410450	15	2.1	16	94	5	57	46	6	6	40	1.54
35410882--35410959	29	2.8	27	81	7	77	50	2	3	43	1.34
35410949--35411024	21	3.4	21	71	18	55	64	3	2	28	1.25
35417246--35417394	43	3.6	41	80	8	149	35	26	16	21	1.94
35417246--35417391	42	3.5	42	80	6	161	36	26	16	21	1.94
35424108--35424273	30	5.5	30	74	11	117	39	10	25	24	1.87
35424116--35424333	120	1.8	120	83	2	294	38	11	24	24	1.89
35424261--35424330	30	2.3	30	85	0	86	38	12	22	25	1.90
35424083--35424303	60	3.7	59	67	15	166	39	11	23	24	1.89
35426952--35427142	51	3.8	51	77	10	194	32	26	15	25	1.96
35436261--35436344	43	2.0	43	90	4	134	54	0	20	25	1.44
35436276--35436331	16	3.4	16	76	18	53	58	0	17	23	1.38
35440334--35440492	54	3.1	54	72	17	147	45	3	3	48	1.34
35440436--35440850	59	6.9	58	66	20	212	42	2	5	49	1.38
35440435--35440844	120	3.4	120	97	0	732	42	2	4	49	1.38
35441063--35441127	16	4.1	16	91	0	112	18	35	7	38	1.80
35448158--35448193	18	2.0	18	94	0	63	27	11	13	47	1.77
35453779--35453840	30	2.1	30	100	0	124	32	37	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35468535--35468563	15	1.9	15	100	0	58	27	24	6	41	1.80
35474944--35475081	39	3.5	39	94	2	224	29	2	22	44	1.67
35474990--35475061	22	3.5	22	68	26	66	29	2	20	47	1.64
35474944--35475098	39	3.9	39	92	2	222	30	3	22	43	1.69
35477978--35478045	20	3.4	20	78	8	75	19	29	13	38	1.89
35477960--35478088	40	3.2	40	82	0	159	18	28	16	36	1.93
35478053--35478118	20	3.3	20	71	0	60	15	31	21	31	1.94
35477957--35478112	80	1.9	81	79	6	174	17	29	16	35	1.93
35490650--35490687	18	2.1	18	90	0	58	57	5	13	23	1.56
35493267--35493344	41	1.9	41	94	0	138	34	29	12	23	1.92
35493986--35494015	2	15.0	2	92	0	51	0	46	3	50	1.18
35498190--35498237	20	2.5	19	76	6	51	41	6	0	52	1.27
35499013--35499087	37	2.0	37	94	0	132	21	26	22	29	1.99
35499456--35499497	6	6.8	6	91	2	66	16	28	0	54	1.42
35507371--35507429	6	9.7	6	96	1	64	18	23	0	57	1.40
35507378--35507429	6	8.7	6	97	0	77	17	25	0	57	1.40
35507370--35507429	18	3.3	18	88	2	84	18	25	0	56	1.41
35519803--35519974	40	4.3	40	88	2	222	25	21	27	25	1.99
35519803--35519974	79	2.2	79	84	3	220	25	21	27	25	1.99
35519830--35520007	79	2.2	80	80	3	191	25	21	28	24	1.99
35527742--35527913	40	4.3	40	88	2	222	25	21	27	25	1.99
35527742--35527913	79	2.2	79	84	3	220	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35527769--35527946	79	2.2	80	80	3	191	25	21	28	24	1.99
35531215--35531253	19	2.1	19	85	9	53	17	10	5	66	1.39
35546902--35547073	40	4.3	40	88	2	222	25	21	27	25	1.99
35546902--35547073	79	2.2	79	84	3	220	25	21	27	25	1.99
35546929--35547106	79	2.2	80	80	3	191	25	21	28	24	1.99
35550385--35550424	19	2.1	20	86	9	57	17	10	5	67	1.37
35558025--35558061	5	7.2	5	90	6	56	64	0	0	35	0.94
35558314--35558360	24	1.9	25	86	4	69	57	0	38	4	1.18
35558317--35558398	20	3.8	20	72	13	65	57	2	35	4	1.33
35559291--35559340	20	2.5	20	90	6	75	28	14	16	42	1.86
35560093--35560130	19	2.0	19	100	0	76	31	21	10	36	1.87
35560133--35560258	3	43.0	3	88	4	195	0	30	0	69	0.89
35560413--35560555	43	3.3	43	86	3	216	27	27	23	20	1.99
35560413--35560579	86	1.9	86	85	0	226	26	28	23	21	1.99
35560520--35560746	43	5.3	43	75	9	162	25	30	18	25	1.98
35560872--35560903	10	3.3	10	95	4	57	62	6	0	31	1.20
35560872--35560910	19	2.1	19	85	9	53	66	5	0	28	1.12
35561100--35561240	66	2.1	66	87	5	196	14	27	17	40	1.89
35561133--35561261	66	2.0	66	87	3	188	15	25	17	41	1.89
35567276--35567506	27	8.5	27	85	0	264	27	14	27	30	1.95
35567275--35567506	54	4.3	55	87	3	301	27	14	27	30	1.95
35575429--35575659	27	8.5	27	84	0	255	27	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35575428--35575659	54	4.3	55	86	3	292	28	14	27	30	1.95
35578246--35578295	16	3.2	16	88	2	75	38	0	14	48	1.44
35578249--35578304	9	6.8	9	73	19	50	37	0	14	48	1.44
35578950--35578985	15	2.5	15	90	4	56	63	8	16	11	1.49
35583445--35583722	41	6.8	41	78	5	242	31	24	24	19	1.98
35583445--35583722	82	3.4	81	79	4	272	31	24	24	19	1.98
35583466--35583722	123	2.1	122	81	8	290	31	25	24	18	1.98
35583754--35583910	41	3.9	38	76	12	138	16	22	24	36	1.94
35583899--35583924	12	2.2	12	100	0	52	46	30	15	7	1.74
35583944--35584008	3	21.7	3	100	0	130	0	33	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214