genome.fa.s25.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  136  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41296828--41296895	31	2.2	30	77	10	75	38	14	11	35	1.83
41299821--41299846	2	13.0	2	100	0	52	0	0	50	50	1.00
41306944--41307026	21	4.1	20	70	21	64	36	0	4	59	1.19
41306944--41306994	22	2.4	22	83	3	59	31	0	1	66	1.03
41306986--41307037	22	2.3	21	78	18	52	34	1	5	57	1.33
41308092--41308125	16	2.1	16	94	0	59	11	35	0	52	1.38
41308993--41309026	11	3.1	11	100	0	68	35	11	8	44	1.72
41310234--41310273	20	2.0	20	85	0	53	50	15	10	25	1.74
41311164--41311208	9	5.0	9	84	10	56	60	0	2	37	1.09
41315841--41315874	10	3.4	10	95	0	59	76	0	0	23	0.79
41324004--41324061	19	3.2	19	71	20	52	62	5	27	5	1.38
41324953--41325195	82	3.0	81	86	3	326	47	9	12	31	1.72
41326702--41326881	64	2.8	63	84	3	234	22	19	21	37	1.95
41326870--41326922	25	2.2	24	82	3	61	18	24	18	37	1.94
41328881--41328905	6	4.2	6	100	0	50	32	0	16	52	1.44
41338744--41338794	25	2.0	25	96	0	93	33	45	7	13	1.73
41340301--41340399	23	4.3	23	88	0	153	31	26	21	21	1.98
41340301--41340399	46	2.2	46	92	0	171	31	26	21	21	1.98
41347707--41347805	23	4.3	23	90	0	153	29	26	21	23	1.99
41351468--41351540	26	2.8	25	78	10	67	36	23	21	17	1.94
41352197--41352236	20	2.0	20	85	0	53	37	15	2	45	1.59
41356610--41356675	28	2.2	31	86	7	93	42	4	3	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41358682--41358748	31	2.2	31	86	0	89	43	4	4	47	1.43
41366165--41366264	29	3.4	29	74	14	89	27	18	12	43	1.85
41366153--41366246	31	3.1	29	77	15	93	22	15	10	51	1.74
41366802--41366852	16	3.1	16	75	16	50	43	0	1	54	1.11
41366805--41366860	28	2.0	27	86	3	76	44	0	3	51	1.18
41366862--41366899	17	2.2	18	85	4	51	31	0	13	55	1.38
41366918--41366980	27	2.4	27	80	15	69	33	0	4	61	1.17
41367178--41367241	32	2.0	32	84	3	83	46	6	12	34	1.67
41368826--41368875	25	2.0	25	100	0	100	44	8	20	28	1.79
41378143--41378195	21	2.7	20	83	13	65	37	5	3	52	1.43
41383356--41383484	25	5.2	25	71	16	81	33	21	23	21	1.97
41383397--41383444	23	2.1	23	88	0	69	31	22	29	16	1.96
41383426--41383496	26	2.8	26	80	2	81	35	22	23	18	1.96
41391341--41391388	19	2.9	16	75	19	53	58	4	16	20	1.55
41391335--41391389	16	3.2	17	76	16	60	56	3	20	20	1.57
41393619--41393659	20	2.0	20	100	0	82	14	14	4	65	1.42
41394465--41394499	14	2.8	12	84	16	52	51	0	0	48	1.00
41394472--41394500	14	2.1	14	100	0	58	48	0	0	51	1.00
41394748--41394797	13	3.9	13	82	15	68	16	18	4	62	1.48
41394743--41394796	12	4.3	12	82	13	56	18	18	3	59	1.52
41397759--41397793	9	3.9	9	92	0	61	37	20	31	11	1.88
41399129--41399193	32	2.0	32	100	0	130	33	18	15	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41407451--41407533	24	3.4	23	72	6	58	21	25	21	31	1.98
41407653--41407766	25	4.7	24	78	8	99	21	27	21	29	1.98
41407702--41407787	25	3.5	24	81	10	77	22	25	23	29	1.99
41409982--41410110	43	3.0	43	80	10	165	22	17	28	31	1.96
41417515--41417571	23	2.6	23	80	5	73	45	0	1	52	1.11
41417617--41417681	27	2.4	27	92	0	103	27	21	32	18	1.97
41417817--41417849	3	11.3	3	93	6	59	66	0	33	0	0.92
41417816--41417849	17	2.0	17	100	0	68	64	0	35	0	0.94
41417820--41417848	14	2.1	14	100	0	58	65	0	34	0	0.93
41417995--41418032	19	2.0	20	89	5	60	34	0	13	52	1.40
41417968--41418114	80	1.9	79	84	8	203	33	1	12	52	1.48
41418127--41418248	60	2.0	60	88	3	183	31	0	13	54	1.40
41418365--41418401	16	2.4	15	90	4	56	37	2	0	59	1.12
41421425--41421493	27	2.5	28	76	6	70	21	34	17	26	1.95
41421446--41421502	27	2.1	27	90	0	87	21	33	24	21	1.97
41434263--41434358	31	3.1	30	77	3	93	22	17	22	36	1.95
41434287--41434358	30	2.4	30	83	2	90	25	19	22	33	1.97
41437635--41437669	17	2.0	18	88	5	54	60	5	0	34	1.21
41437634--41437671	9	4.2	9	86	10	51	60	5	0	34	1.19
41444227--41444251	5	5.0	5	100	0	50	0	60	40	0	0.97
41444274--41444303	11	2.6	11	94	5	51	36	3	0	60	1.14
41444285--41444342	26	2.1	27	84	6	73	24	1	5	68	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41444967--41445652	126	5.5	125	87	2	896	29	16	23	30	1.96
41448832--41449423	22	27.7	21	82	5	652	25	0	30	43	1.58
41448832--41449431	43	14.0	43	81	6	636	25	0	30	43	1.58
41448832--41449431	107	5.6	107	85	4	739	25	0	30	43	1.58
41448832--41449440	21	28.5	21	78	10	436	25	0	30	43	1.59
41449965--41450007	18	2.4	18	84	0	59	46	9	27	16	1.77
41450789--41450826	20	1.9	20	84	10	51	55	7	2	34	1.43
41451825--41451901	11	6.9	11	70	24	63	42	1	28	27	1.63
41451766--41451863	51	1.9	51	83	4	126	43	3	24	28	1.69
41451825--41451899	22	3.3	23	80	15	79	42	1	28	28	1.64
41451825--41451900	33	2.3	34	81	9	93	42	1	28	27	1.64
41452914--41452984	27	2.6	27	84	0	97	25	33	32	8	1.86
41453016--41453049	3	11.3	3	87	0	50	58	0	41	0	0.98
41453386--41453492	40	2.6	40	81	12	119	32	2	10	54	1.49
41453268--41453476	76	2.7	76	76	10	201	33	4	11	50	1.60
41456367--41456398	16	1.9	17	93	6	57	18	0	37	43	1.51
41458499--41459270	152	5.0	153	82	9	937	31	10	6	51	1.62
41460882--41460946	17	3.8	17	78	13	62	70	0	4	24	1.06
41460881--41460936	24	2.2	25	87	6	78	69	0	3	26	1.04
41465584--41465969	75	5.1	75	88	0	502	33	16	18	30	1.94
41474197--41474250	27	2.0	27	92	0	90	46	5	24	24	1.74
41474196--41474250	23	2.4	23	81	0	65	45	7	23	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41474197--41474240	4	11.2	4	85	4	63	47	2	25	25	1.63
41477218--41477244	13	2.1	13	100	0	54	66	14	0	18	1.25
41477757--41477788	17	1.9	17	93	6	57	15	0	0	84	0.63
41477751--41478319	303	1.9	304	89	1	881	12	19	31	36	1.89
41478533--41478569	15	2.6	14	87	8	56	16	0	2	81	0.81
41478877--41478955	29	2.7	29	86	4	104	41	2	20	35	1.66
41479237--41479288	27	1.9	27	92	0	86	32	1	28	36	1.69
41481895--41481939	17	2.8	16	83	6	54	64	4	6	24	1.37
41484245--41484359	50	2.3	50	79	8	126	30	19	16	33	1.94
41486434--41486489	25	2.2	25	83	0	67	35	19	21	23	1.96
41486448--41486522	25	3.0	24	82	3	78	36	18	26	18	1.94
41486459--41486541	25	3.3	25	81	0	76	36	16	28	18	1.93
41487866--41488023	79	2.0	80	80	6	178	40	8	13	37	1.76
41488658--41488743	41	2.1	41	91	0	136	30	19	20	29	1.97
41490755--41490796	15	2.8	15	96	0	75	14	16	4	64	1.45
41499292--41499346	22	2.5	24	85	11	73	29	18	3	49	1.64
41499932--41500004	5	14.4	5	78	18	71	56	0	0	43	0.99
41499928--41500004	24	3.3	23	80	10	77	54	0	0	45	0.99
41499931--41499999	36	1.9	36	85	5	95	55	0	0	44	0.99
41499932--41500014	14	6.2	13	73	13	53	56	2	0	40	1.12
41503243--41503276	7	4.9	7	100	0	68	41	0	0	58	0.98
41505186--41505227	14	2.9	15	83	16	54	33	0	14	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41505836--41505877	18	2.3	18	87	0	57	23	28	2	45	1.66
41506804--41507138	124	2.7	124	93	0	573	29	15	22	32	1.95
41509523--41509579	24	2.3	25	93	3	98	43	14	0	42	1.44
41510052--41510091	18	2.2	18	95	0	71	40	7	30	22	1.81
41510923--41510960	20	1.9	20	84	10	51	55	7	2	34	1.43
41511687--41511748	26	2.4	26	78	7	65	61	1	1	35	1.16
41511957--41512011	11	4.9	11	75	20	60	41	1	29	27	1.66
41511957--41512011	22	2.5	21	83	16	67	41	1	29	27	1.66
41514333--41514412	40	2.0	40	100	0	160	35	17	10	37	1.83
41515418--41515834	126	3.3	126	89	1	622	26	20	19	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214