genome.fa.s25.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  108  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32462794--32462876	18	4.6	18	81	0	94	24	18	16	40	1.90
32462775--32462876	36	2.8	36	77	1	114	24	18	15	41	1.90
32462783--32462877	18	5.3	18	79	0	82	25	20	15	38	1.92
32465359--32465471	44	2.6	42	82	8	118	17	18	19	44	1.87
32465396--32465472	22	3.6	21	75	13	77	16	22	19	41	1.90
32467489--32467528	19	2.1	19	95	0	71	62	10	7	20	1.50
32471350--32471412	30	2.1	30	90	0	99	58	12	4	23	1.53
32473244--32473396	69	2.2	69	80	4	164	13	30	12	43	1.80
32480588--32480634	7	6.7	7	95	0	85	17	0	42	40	1.49
32480983--32481470	23	22.0	22	81	6	549	25	1	25	48	1.59
32480983--32481472	89	5.5	88	82	7	598	25	1	25	48	1.59
32482812--32482849	20	1.9	20	84	10	51	55	7	2	34	1.43
32485334--32485409	11	6.8	12	78	18	92	42	0	31	26	1.56
32485334--32485409	33	2.3	35	84	9	104	42	0	31	26	1.56
32493217--32493439	23	9.7	23	75	0	169	45	21	14	19	1.85
32493232--32493299	22	3.0	22	75	12	75	45	23	14	16	1.84
32493226--32493446	46	4.9	46	81	1	223	46	20	13	19	1.84
32496129--32496163	15	2.3	15	85	0	52	22	11	11	54	1.68
32499031--32499100	25	2.8	25	88	0	104	30	24	20	25	1.99
32508978--32509019	12	3.5	12	100	0	84	42	23	7	26	1.80
32509922--32510056	23	5.9	23	74	0	128	40	20	17	21	1.92
32509914--32510052	69	2.0	69	85	2	190	38	20	17	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32515102--32515167	23	2.9	22	77	8	69	48	19	15	16	1.81
32517379--32517479	33	3.0	33	86	1	112	30	23	22	22	1.99
32517418--32517487	33	2.1	33	94	0	122	30	22	25	21	1.99
32517875--32518123	27	9.2	26	84	8	295	20	15	20	43	1.87
32517875--32518123	81	3.1	79	85	7	329	20	15	20	43	1.87
32520781--32520987	28	7.4	28	84	4	251	29	20	26	24	1.99
32520787--32520987	84	2.4	85	87	3	291	28	20	26	24	1.99
32521094--32521169	26	2.9	26	76	0	71	32	22	23	21	1.98
32521421--32521792	81	4.6	82	78	7	350	19	15	20	44	1.87
32521390--32521792	27	14.9	27	78	7	302	20	15	20	43	1.88
32521699--32521802	55	1.9	54	84	2	136	22	15	21	41	1.90
32530135--32530176	22	2.1	19	86	13	57	52	0	2	45	1.13
32541547--32541593	21	2.2	21	88	0	67	46	25	14	12	1.80
32546932--32546985	21	2.5	21	81	3	63	46	0	3	50	1.19
32548513--32548786	145	1.9	145	96	0	503	31	23	14	29	1.95
32553221--32553307	27	3.2	27	90	0	129	36	9	26	27	1.87
32570927--32570967	20	2.0	22	85	9	59	29	0	17	53	1.44
32571771--32572200	45	9.4	45	81	5	386	41	14	20	24	1.89
32580199--32580360	25	6.5	25	79	6	107	32	22	22	23	1.98
32580199--32580371	50	3.5	49	75	6	132	33	21	21	23	1.97
32585332--32585416	25	3.4	25	83	1	98	34	20	22	23	1.97
32585319--32585430	50	2.3	49	78	6	127	31	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32585318--32585431	25	4.6	24	75	13	79	31	22	22	22	1.98
32585418--32585465	25	2.0	24	87	4	69	37	20	20	20	1.95
32590304--32590346	20	2.2	20	91	0	68	13	25	0	60	1.34
32590661--32590784	56	2.3	52	85	8	162	23	31	19	25	1.98
32590600--32590790	50	3.7	50	80	4	166	24	27	20	27	1.99
32593903--32593956	21	2.6	20	82	5	63	33	7	33	25	1.84
32594344--32594430	39	2.2	39	95	0	156	25	12	20	41	1.88
32600147--32600270	45	2.8	45	82	0	140	37	17	20	23	1.94
32600244--32600632	45	8.6	45	83	7	450	41	15	20	22	1.90
32600244--32600634	91	4.3	91	85	4	499	40	16	19	23	1.90
32604234--32604293	31	2.0	31	83	9	79	38	15	28	18	1.91
32606701--32606746	12	3.4	14	82	11	60	4	28	0	67	1.10
32606822--32606854	13	2.8	12	86	13	50	6	18	3	72	1.18
32607726--32607760	13	2.8	13	91	4	54	22	2	5	68	1.24
32610127--32610185	27	2.2	27	87	0	82	37	20	10	32	1.86
32620806--32621047	66	3.6	68	80	8	201	18	21	17	42	1.89
32620816--32621088	35	8.1	35	78	9	262	18	20	17	43	1.88
32620882--32621088	67	3.0	67	87	2	279	18	20	17	42	1.89
32627878--32627910	17	1.9	17	88	11	50	18	33	15	33	1.92
32638524--32638575	25	2.1	24	89	3	77	32	21	25	21	1.98
32639890--32640017	69	1.9	68	88	1	193	42	3	5	49	1.41
32649536--32649582	12	3.8	12	88	2	67	17	6	23	53	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32660285--32661358	533	2.0	537	88	1	1591	30	17	18	33	1.94
32670659--32670719	26	2.3	26	88	0	86	40	6	27	24	1.80
32672590--32672632	22	2.0	22	90	0	68	13	18	23	44	1.86
32672820--32673090	43	6.3	43	77	2	267	29	30	16	22	1.96
32672820--32673071	86	2.9	86	88	1	353	27	30	17	24	1.97
32672840--32673090	129	1.9	129	81	4	301	29	30	16	23	1.97
32673398--32673455	21	2.8	21	97	0	107	3	44	15	36	1.63
32673466--32673510	21	2.1	21	87	0	63	2	40	17	40	1.62
32673486--32673621	66	2.1	66	86	5	186	11	27	19	41	1.86
32678997--32679165	9	20.0	9	64	21	71	28	2	20	48	1.62
32679019--32679105	16	5.8	16	70	17	69	29	1	19	49	1.56
32679057--32679165	25	4.3	25	72	15	82	30	1	19	48	1.59
32679222--32679277	27	2.1	27	100	0	112	48	3	7	41	1.48
32679249--32679472	121	1.9	121	96	1	414	45	6	7	40	1.58
32679249--32679505	121	2.2	118	87	6	333	45	6	6	41	1.55
32679500--32679589	18	4.9	18	79	14	103	42	0	12	45	1.41
32679503--32679607	31	3.5	31	71	21	100	42	0	13	43	1.43
32679579--32679689	40	2.8	40	83	4	127	39	4	11	44	1.61
32679664--32679694	13	2.4	13	94	0	53	41	0	12	45	1.42
32679729--32679761	10	3.1	11	86	8	50	36	21	9	33	1.85
32683315--32683422	7	15.0	7	74	12	67	32	46	1	19	1.61
32683316--32683419	29	3.8	29	76	15	105	30	48	1	19	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32683323--32683394	22	3.3	22	84	5	92	29	48	2	19	1.63
32683316--32683401	22	4.0	21	84	4	82	30	48	2	18	1.60
32683371--32683419	22	2.2	22	82	7	55	34	46	0	18	1.49
32684045--32684104	31	1.9	31	83	6	77	53	0	6	40	1.27
32684099--32684138	19	2.1	19	95	0	71	15	2	0	82	0.77
32685486--32685723	41	5.8	41	83	3	282	31	26	22	20	1.98
32685501--32685723	81	2.7	82	82	5	254	32	26	22	18	1.97
32685486--32685719	122	1.9	123	85	4	321	32	25	21	20	1.98
32685767--32685894	39	3.3	39	80	4	150	19	20	22	37	1.94
32687941--32688011	31	2.3	31	90	4	108	23	28	8	39	1.84
32689073--32689097	9	2.8	9	100	0	50	24	24	16	36	1.94
32694038--32694152	45	2.6	44	80	6	124	40	8	23	26	1.83
32695804--32695932	51	2.5	52	88	3	190	25	15	30	28	1.96
32702602--32702640	20	2.0	20	85	9	55	33	0	2	64	1.08
32704502--32704549	9	5.2	9	77	22	55	41	2	2	54	1.24
32704502--32704551	20	2.7	18	80	20	59	40	4	2	54	1.31
32705568--32705622	29	1.9	28	85	3	74	25	12	20	41	1.87
32706551--32706618	29	2.3	29	80	7	75	41	20	16	22	1.90
32707928--32707995	32	2.2	31	82	10	84	29	5	17	47	1.71
32708231--32708271	21	2.0	21	90	0	64	29	12	26	31	1.92
32713068--32713149	40	2.0	41	88	2	121	21	25	15	36	1.94
32720365--32720589	41	5.6	41	79	4	224	20	28	16	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32722422--32722462	17	2.4	17	88	8	57	31	12	31	24	1.92
32722436--32722469	17	2.0	17	88	0	50	32	11	32	23	1.91
32723279--32723330	25	2.0	25	82	10	61	17	13	11	57	1.64
32730123--32730181	24	2.4	25	77	8	68	52	3	6	37	1.45
32736534--32736624	25	3.6	25	80	0	92	24	24	21	29	1.99
32736758--32736790	17	1.9	17	93	0	57	48	12	0	39	1.40
32741480--32741544	32	2.0	32	96	0	121	38	26	6	29	1.80
32748081--32748121	20	2.0	20	90	0	64	17	17	43	21	1.87
32748372--32748810	27	16.3	27	85	0	529	42	21	17	19	1.90
32752173--32752356	51	3.7	48	82	12	203	23	17	28	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214