genome.fa.s25.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  199  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58275776--58275835	30	2.0	31	86	3	86	20	36	0	43	1.52
58275927--58275958	16	1.9	17	93	6	57	31	18	0	50	1.48
58276580--58276605	10	2.6	10	100	0	52	26	19	11	42	1.85
58279076--58279109	15	2.1	17	89	10	54	58	2	0	38	1.13
58279065--58279112	22	2.1	23	84	3	62	62	2	0	35	1.07
58281137--58281171	6	5.8	6	100	0	70	17	0	51	31	1.45
58284381--58284421	3	13.7	3	100	0	82	0	31	0	68	0.90
58286059--58286117	18	3.4	18	79	15	70	42	0	5	52	1.23
58286049--58286117	34	1.9	37	88	8	108	43	0	4	52	1.21
58286231--58286280	8	6.1	8	80	15	50	48	2	0	50	1.12
58289362--58289433	21	3.4	21	90	0	108	30	6	27	34	1.83
58298584--58298610	14	1.9	14	100	0	54	33	0	0	66	0.92
58307782--58307895	31	3.8	30	71	17	101	47	10	17	24	1.79
58321628--58321720	25	3.7	25	73	13	84	18	27	22	31	1.97
58321700--58321797	25	3.9	25	68	10	74	23	28	19	28	1.98
58322806--58322844	11	3.4	11	80	13	51	51	0	2	46	1.14
58322824--58322861	14	2.4	17	87	12	55	47	0	0	52	1.00
58326200--58326327	25	5.3	25	78	14	160	50	5	7	36	1.55
58326193--58326327	48	2.8	48	100	0	270	50	5	7	36	1.55
58326193--58326310	23	5.0	23	78	13	132	50	6	8	33	1.59
58326663--58326698	16	2.2	16	100	0	72	27	5	8	58	1.50
58329563--58329771	92	2.3	91	85	5	269	45	3	3	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58329787--58330319	120	4.4	120	96	1	946	42	2	5	49	1.39
58329912--58329963	15	3.6	15	80	12	56	44	0	1	53	1.11
58330032--58330083	15	3.6	15	80	12	56	44	0	1	53	1.11
58330281--58330322	15	2.7	16	82	14	52	45	0	2	52	1.13
58330272--58330313	15	2.9	15	82	10	52	47	0	0	52	1.00
58329787--58330402	240	2.6	237	86	7	694	43	3	4	47	1.40
58330256--58330567	152	2.0	156	91	3	506	47	5	4	42	1.45
58330690--58330725	16	2.2	16	100	0	72	38	36	0	25	1.56
58341908--58341936	2	14.5	2	100	0	58	51	0	0	48	1.00
58342520--58342572	24	2.2	24	89	0	79	33	1	9	54	1.43
58346197--58346242	17	2.6	18	86	10	60	69	0	6	23	1.11
58351165--58351233	35	1.9	36	94	2	122	26	4	17	52	1.63
58352570--58352609	20	2.0	20	90	0	62	50	12	10	27	1.72
58352558--58352624	34	1.9	35	87	3	100	49	13	7	29	1.69
58353533--58354024	114	4.4	110	83	11	628	41	14	17	27	1.88
58353526--58354025	224	2.2	223	85	7	669	41	14	17	27	1.87
58354116--58354140	12	2.1	12	100	0	50	40	0	24	36	1.55
58354166--58354765	108	5.2	115	79	12	662	32	16	13	38	1.87
58354166--58354747	223	2.6	219	87	5	781	32	16	13	37	1.88
58365343--58365403	29	2.1	30	84	3	79	34	11	6	47	1.66
58371659--58371722	6	10.2	6	77	12	58	78	3	4	14	1.04
58371659--58371753	28	3.3	29	79	13	108	77	4	6	11	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58371784--58371824	12	3.5	12	83	6	57	63	2	9	24	1.37
58376047--58376586	273	2.0	274	94	0	938	33	22	16	27	1.96
58378589--58378626	20	1.9	20	89	10	60	73	2	0	23	0.95
58380240--58380275	18	2.0	18	100	0	72	50	5	0	44	1.25
58384565--58384613	23	2.0	26	88	11	77	30	20	0	48	1.50
58384768--58384823	6	9.3	6	88	0	67	57	7	0	35	1.26
58384771--58384823	12	4.4	12	95	0	88	56	7	0	35	1.28
58384768--58384823	18	3.1	18	89	0	76	57	7	0	35	1.26
58385480--58385505	11	2.4	11	100	0	52	0	42	7	50	1.31
58385561--58385602	16	2.6	16	88	0	66	59	4	0	35	1.19
58387787--58387942	50	3.1	50	90	0	240	27	20	28	23	1.99
58387806--58387988	50	3.7	49	82	4	165	28	20	26	24	1.99
58390243--58390286	11	3.8	11	82	11	61	63	0	0	36	0.95
58390249--58390291	12	3.4	13	78	15	54	58	0	0	41	0.98
58390245--58390291	24	1.9	25	95	4	87	59	0	0	40	0.97
58398578--58398618	21	2.0	21	85	0	55	34	2	26	36	1.70
58399212--58399308	23	4.1	24	76	7	83	21	21	18	38	1.94
58399192--58399280	45	1.9	47	84	4	119	20	20	19	40	1.92
58399220--58399308	25	3.7	23	77	7	70	20	21	19	39	1.93
58399267--58399314	25	1.9	25	95	0	87	18	25	20	35	1.95
58401715--58401759	15	3.1	15	77	6	56	35	0	2	62	1.08
58401715--58401759	14	3.1	14	80	3	54	35	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58415346--58415423	39	1.9	39	85	10	104	61	1	2	34	1.18
58421458--58421485	2	14.0	2	100	0	56	0	50	0	50	1.00
58421998--58422057	29	2.1	29	100	0	120	31	11	6	50	1.65
58422088--58422112	12	2.1	12	100	0	50	8	16	16	60	1.58
58424536--58424577	21	2.0	22	85	4	59	40	2	9	47	1.49
58434533--58434583	26	2.0	26	88	0	75	19	23	21	35	1.96
58439275--58439311	19	1.9	19	94	0	65	24	35	10	29	1.89
58439306--58439351	22	2.1	22	87	0	65	15	23	19	41	1.89
58449150--58449316	50	3.2	50	79	6	138	23	28	20	27	1.99
58463253--58463301	6	7.8	6	93	6	80	46	16	16	20	1.83
58463279--58463463	45	4.1	45	88	2	257	40	21	18	19	1.91
58465345--58465654	46	7.2	45	85	8	354	28	20	15	35	1.93
58465527--58465634	36	3.0	36	97	0	198	29	19	12	37	1.89
58469907--58469939	15	2.1	16	94	5	59	48	0	30	21	1.50
58472027--58472064	6	6.3	6	84	9	51	15	2	0	81	0.80
58472018--58472061	20	2.2	20	88	8	63	15	2	0	81	0.78
58472269--58472608	109	3.1	108	88	2	493	33	16	17	32	1.92
58479119--58479143	12	2.1	12	100	0	50	60	8	16	16	1.58
58484101--58484701	99	6.1	99	88	1	819	30	22	21	24	1.99
58486685--58486996	109	2.9	108	92	3	495	30	16	19	33	1.95
58488646--58488718	35	2.1	35	84	5	94	56	1	9	32	1.40
58488889--58488916	12	2.3	12	100	0	56	35	0	21	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58490715--58490778	31	2.1	31	96	0	119	17	18	21	42	1.89
58490766--58491388	89	7.0	88	81	4	524	22	20	25	31	1.98
58490777--58491374	133	4.5	133	75	6	544	22	20	26	30	1.98
58498139--58498210	37	1.9	37	86	5	101	55	1	9	33	1.41
58501274--58501310	10	3.6	10	88	3	56	70	0	29	0	0.88
58501471--58501570	40	2.4	41	83	8	123	34	3	12	51	1.54
58507030--58507989	319	3.0	317	91	1	1525	29	11	7	51	1.66
58508346--58508449	4	25.8	4	73	23	51	0	29	0	70	0.88
58508340--58508449	18	5.6	21	77	9	83	0	30	0	70	0.88
58508340--58508449	10	11.3	10	69	19	72	0	30	0	70	0.88
58508315--58508450	38	3.6	38	79	7	152	0	31	0	67	0.96
58508382--58508460	24	3.3	23	71	11	70	0	35	0	64	0.94
58516435--58516499	3	21.7	3	83	0	85	24	67	3	4	1.24
58516471--58516517	15	3.1	15	84	0	58	12	68	8	10	1.40
58527147--58527180	15	2.3	15	89	0	50	17	14	8	58	1.61
58529062--58529105	19	2.3	20	84	7	56	27	20	11	40	1.86
58531020--58531060	18	2.3	18	87	4	57	31	21	0	46	1.52
58533209--58533557	86	4.1	86	91	0	529	26	22	24	26	2.00
58533263--58533396	42	3.1	42	62	23	98	27	25	23	23	2.00
58533506--58535949	136	18.1	136	97	0	4565	27	19	22	29	1.98
58533506--58535949	271	9.0	272	97	0	4565	27	19	22	29	1.98
58533506--58535949	407	6.0	408	97	1	4565	27	19	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58535851--58536044	95	2.0	95	93	2	327	30	18	21	28	1.97
58535715--58536147	229	1.9	230	90	1	699	28	18	22	30	1.97
58536157--58536577	44	9.6	44	73	6	275	28	16	24	29	1.97
58536157--58536567	132	3.1	132	93	0	680	28	16	25	29	1.97
58536157--58536532	88	4.3	90	75	5	320	28	17	25	28	1.97
58538935--58538968	15	2.3	15	89	0	50	17	14	8	58	1.61
58543734--58543768	12	2.9	12	95	0	61	34	17	8	40	1.80
58543747--58543827	26	2.9	29	76	12	89	25	13	9	50	1.72
58543773--58543811	14	2.9	14	85	7	55	23	17	10	48	1.78
58552098--58552132	12	2.9	12	95	0	61	34	17	8	40	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214