genome.fa.s25.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Length:  63843421

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   

This is table  213  of  214  ( 25680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63013586--63013612	14	1.9	14	100	0	54	51	11	0	37	1.37
63028850--63028874	9	2.8	9	100	0	50	88	0	0	12	0.53
63028970--63029106	54	2.5	55	81	2	150	34	20	18	26	1.96
63029087--63029697	52	11.4	51	75	11	383	22	21	17	38	1.94
63029141--63029664	109	4.9	109	72	14	308	21	22	17	37	1.94
63029141--63029664	103	4.9	102	71	13	267	21	22	17	37	1.94
63029616--63029784	62	2.9	61	80	7	181	23	18	21	36	1.95
63029706--63030163	175	2.7	170	78	12	506	25	18	20	35	1.96
63029511--63030162	60	11.5	60	74	12	264	24	19	20	36	1.95
63030048--63030175	59	2.2	60	84	7	163	25	21	18	35	1.96
63029035--63030311	56	23.0	56	72	11	638	23	20	18	36	1.95
63032274--63032590	107	3.0	105	80	9	311	39	19	20	20	1.93
63032274--63032589	55	5.9	55	76	8	281	39	19	20	20	1.93
63032372--63032586	108	2.0	106	85	5	288	39	19	20	20	1.93
63034280--63034316	17	2.2	17	90	0	56	37	13	5	43	1.67
63034868--63034940	36	2.0	36	87	10	105	41	2	1	54	1.23
63037372--63037421	25	2.0	25	92	0	82	56	4	36	4	1.37
63041045--63041075	14	2.2	14	94	0	53	48	0	0	51	1.00
63057058--63057102	23	1.9	24	86	4	65	35	8	4	51	1.54
63063110--63063246	72	1.9	72	81	3	168	18	14	20	45	1.84
63063456--63063480	12	2.1	12	100	0	50	32	16	28	24	1.96
63084301--63084388	40	2.1	42	81	8	110	53	9	1	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63087517--63087558	17	2.5	17	80	7	50	30	4	2	61	1.29
63089305--63089333	15	1.9	15	100	0	58	65	0	0	34	0.93
63090382--63090425	22	2.0	22	91	8	72	72	2	0	25	0.96
63097927--63098454	262	2.0	262	100	0	1056	32	12	14	41	1.83
63109221--63109299	38	2.1	38	97	0	149	51	8	8	30	1.63
63115450--63115492	18	2.4	18	88	0	59	41	44	2	11	1.53
63119898--63119953	22	2.5	22	78	16	62	39	0	1	58	1.08
63120409--63120457	24	2.0	24	88	4	71	34	0	4	61	1.15
63120421--63120478	30	2.0	28	86	6	80	27	0	6	65	1.18
63123838--63123881	9	4.9	9	91	0	61	56	0	9	34	1.31
63123838--63123875	3	12.7	3	88	0	58	60	0	5	34	1.19
63125356--63125453	44	2.2	45	87	1	135	26	27	14	31	1.95
63125649--63125937	45	6.5	44	72	3	175	25	24	20	30	1.99
63125648--63125856	89	2.3	89	85	1	276	24	24	20	30	1.98
63138066--63138108	3	13.3	3	81	13	50	62	2	2	32	1.20
63156953--63156977	13	1.9	13	100	0	50	36	0	8	56	1.29
63162198--63162222	5	5.0	5	100	0	50	0	0	40	60	0.97
63167359--63167486	41	3.1	42	90	5	192	35	3	0	60	1.18
63167400--63167465	30	2.2	32	78	13	68	36	1	0	62	1.05
63167441--63167502	32	2.0	32	93	3	108	38	1	0	59	1.07
63169510--63169549	20	2.1	20	86	9	57	70	2	0	27	1.01
63169509--63169550	18	2.3	18	80	8	50	66	2	0	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63173938--63173969	11	3.1	11	91	8	50	90	0	9	0	0.45
63173937--63173971	16	2.1	16	89	5	52	85	0	14	0	0.59
63173938--63173962	9	2.8	9	100	0	50	92	0	8	0	0.40
63174145--63174169	6	4.2	6	100	0	50	32	0	0	68	0.90
63189707--63189770	13	5.3	13	66	30	52	60	12	0	26	1.32
63189707--63189775	21	3.0	21	81	18	93	60	11	0	27	1.31
63189707--63189767	26	2.3	26	91	0	104	60	11	0	27	1.31
63189707--63189780	26	3.0	25	75	18	84	59	10	0	29	1.31
63195445--63195934	242	2.0	242	100	0	980	36	14	18	30	1.91
63204819--63204899	29	2.7	29	83	9	92	51	11	4	32	1.58
63218672--63218745	31	2.4	31	81	4	87	36	13	9	40	1.77
63232125--63232157	7	4.7	7	100	0	66	12	0	0	87	0.53
63234858--63234882	13	1.9	13	100	0	50	48	8	0	44	1.32
63235933--63235978	24	1.9	24	100	0	92	30	32	21	15	1.94
63239496--63239542	3	15.7	3	81	16	53	25	2	2	70	1.10
63245390--63245434	21	2.1	22	84	12	58	66	8	11	13	1.44
63248242--63248548	32	9.3	32	88	5	436	39	16	25	18	1.92
63248242--63248548	67	4.7	64	86	6	418	39	16	25	18	1.92
63248232--63248529	102	3.0	99	92	2	497	39	17	23	19	1.91
63249155--63249180	9	2.9	9	100	0	52	57	34	0	7	1.27
63249464--63249512	24	2.0	24	88	0	71	32	30	16	20	1.94
63252286--63252491	45	4.6	45	92	4	337	32	15	23	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63252286--63252491	91	2.3	90	94	2	353	32	15	23	28	1.95
63253840--63253878	3	13.0	3	100	0	78	33	0	0	66	0.92
63255050--63255099	24	2.0	25	84	3	66	2	36	6	56	1.36
63263561--63263604	22	2.0	22	100	0	88	31	18	18	31	1.95
63270483--63270530	17	2.9	17	87	3	62	56	0	0	43	0.99
63270661--63270729	35	2.0	35	88	0	102	17	23	17	42	1.89
63278277--63278344	26	2.6	26	76	6	66	39	5	1	52	1.34
63288684--63288776	18	5.2	18	90	0	141	30	17	24	27	1.97
63288684--63288776	36	2.6	36	92	0	159	30	17	24	27	1.97
63293555--63293595	22	1.9	22	90	5	66	41	14	7	36	1.74
63298001--63298025	11	2.3	11	100	0	50	56	0	20	24	1.43
63300503--63300533	16	1.9	16	93	0	53	32	3	0	64	1.09
63302347--63302429	9	9.1	9	74	18	50	57	1	4	36	1.28
63302357--63302418	18	3.6	18	77	16	69	58	0	6	35	1.24
63304844--63305145	52	5.9	52	87	4	427	35	14	22	28	1.93
63304830--63305157	150	2.2	150	96	0	593	34	14	22	28	1.93
63304830--63305155	98	3.3	98	84	10	396	34	14	22	28	1.93
63305120--63305302	37	5.0	37	95	1	307	37	16	21	24	1.94
63313547--63313585	16	2.4	16	86	0	51	38	5	0	56	1.22
63319000--63319058	27	2.1	28	84	9	75	27	11	11	49	1.74
63347763--63347899	68	2.0	68	98	0	265	45	13	5	35	1.66
63354572--63354604	17	2.0	17	88	5	50	57	6	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63359976--63360031	21	2.5	23	77	8	62	32	3	1	62	1.23
63366421--63366460	18	2.1	20	86	9	57	25	5	2	67	1.23
63367970--63368012	18	2.4	18	92	0	68	25	25	6	41	1.80
63368228--63368271	21	2.0	22	82	4	54	36	34	13	15	1.87
63368391--63368497	46	2.3	46	86	0	142	42	0	8	47	1.40
63371716--63371803	34	2.6	34	81	10	92	43	14	1	40	1.53
63371721--63371817	34	3.0	32	73	15	83	43	17	1	38	1.56
63372969--63373031	11	6.0	11	75	22	64	57	0	1	41	1.08
63372979--63373012	17	2.0	17	94	0	59	61	0	0	38	0.96
63372960--63373076	40	2.9	41	83	7	157	60	1	2	35	1.20
63372996--63373035	12	3.4	12	82	6	55	57	0	0	42	0.98
63374621--63374724	55	1.9	55	82	7	131	51	13	8	25	1.69
63376814--63376858	21	2.3	21	85	11	60	68	0	8	22	1.16
63376726--63377109	69	5.6	68	77	14	342	59	2	7	30	1.35
63376726--63377047	141	2.3	142	82	7	397	60	1	6	30	1.32
63376979--63377111	61	2.2	61	82	8	164	57	1	7	33	1.36
63379643--63379719	37	2.1	37	97	0	145	40	18	3	37	1.69
63379783--63379942	82	2.0	82	85	0	221	29	23	19	28	1.98
63379785--63379930	41	3.6	41	88	0	193	30	21	19	28	1.98
63388046--63388142	31	3.2	31	68	22	96	30	15	5	48	1.67
63388046--63388167	60	2.0	61	88	3	185	31	16	6	45	1.73
63391797--63391850	27	2.0	28	88	3	83	40	7	1	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63399614--63399642	4	7.2	4	100	0	58	24	0	24	51	1.48
63403852--63403898	19	2.5	19	82	3	60	65	4	25	4	1.29
63416930--63416970	21	1.9	22	85	5	57	58	4	2	34	1.32
63420323--63420357	14	2.4	14	95	4	61	8	25	0	65	1.21
63420303--63420347	19	2.5	18	83	16	58	6	26	0	66	1.16
63420990--63421082	41	2.2	41	98	1	177	24	2	33	39	1.67
63421077--63421136	19	3.1	19	88	9	68	30	5	25	40	1.77
63421090--63421136	19	2.4	19	96	3	85	29	4	21	44	1.71
63422907--63422938	16	1.9	17	93	6	57	53	0	0	46	1.00
63422931--63423143	61	3.4	63	69	17	194	41	2	6	49	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214