genome.fa.s22.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  10  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3369646--3369734	27	3.3	27	85	6	108	20	26	19	33	1.96
3369765--3370030	27	9.8	27	76	6	178	31	10	19	39	1.85
3369796--3370191	27	14.6	27	77	6	192	33	9	21	36	1.85
3369848--3370042	81	2.4	81	83	7	270	30	9	21	38	1.85
3369995--3370197	81	2.5	81	77	1	219	36	8	23	31	1.85
3375298--3375338	21	2.0	21	95	0	73	31	12	39	17	1.86
3378071--3378123	19	2.7	19	80	8	63	84	9	5	0	0.76
3379002--3379379	206	1.8	205	87	1	569	30	17	22	29	1.96
3380985--3381057	26	2.8	27	78	12	73	36	1	2	58	1.21
3381021--3381177	25	6.5	24	71	19	89	35	5	1	57	1.32
3381116--3381214	41	2.4	41	75	14	96	37	8	1	53	1.37
3381385--3381428	22	2.0	22	83	12	56	29	6	6	56	1.51
3389002--3389131	66	1.9	67	84	10	174	33	16	30	20	1.94
3394895--3394972	29	2.7	28	84	11	104	25	15	30	28	1.96
3394925--3395252	174	1.9	174	98	0	629	29	14	25	30	1.95
3398775--3400063	644	2.0	644	100	0	2578	35	18	14	30	1.91
3399731--3401157	712	2.0	712	100	0	2854	36	22	14	26	1.92
3400729--3402057	664	2.0	664	100	0	2658	32	26	16	24	1.96
3402234--3402310	29	2.7	28	74	9	75	27	29	14	28	1.95
3402245--3402338	29	3.3	28	76	8	75	28	30	13	26	1.94
3402296--3402356	28	2.2	27	82	5	68	27	29	13	29	1.94
3402582--3402616	16	2.2	16	94	0	61	8	22	17	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3403847--3403933	29	3.1	29	88	3	133	29	24	13	32	1.94
3406549--3406587	21	1.9	21	94	5	71	10	41	30	17	1.83
3415531--3415651	47	2.6	45	87	11	167	25	19	32	23	1.97
3424559--3424819	40	6.6	40	90	4	370	25	21	27	26	1.99
3424559--3424856	120	2.5	119	83	7	356	26	20	27	25	1.99
3427263--3427293	7	4.4	7	91	0	53	58	0	25	16	1.38
3427804--3427895	40	2.3	41	87	7	127	31	15	26	27	1.95
3428819--3428897	31	2.5	31	89	0	131	26	25	17	30	1.97
3428924--3429013	43	2.1	42	85	2	117	36	18	12	32	1.88
3429145--3429280	26	5.3	26	92	3	208	28	23	19	27	1.99
3429326--3429390	20	3.2	20	97	0	121	30	18	9	41	1.82
3436735--3436792	15	3.8	15	88	2	89	51	12	0	36	1.39
3437265--3437319	23	2.4	24	84	6	69	3	16	5	74	1.15
3437294--3437318	13	1.9	13	100	0	50	0	12	8	80	0.92
3437437--3437500	32	2.0	32	85	8	87	46	7	0	45	1.32
3438013--3438041	13	2.1	14	93	6	51	44	3	0	51	1.18
3442845--3442927	21	3.8	23	73	9	66	37	22	21	18	1.94
3444253--3444298	23	2.0	23	86	0	65	4	17	4	73	1.15
3444962--3444990	13	2.1	14	93	6	51	44	3	0	51	1.18
3451776--3451839	31	2.1	31	90	0	101	23	21	15	39	1.92
3452054--3452173	23	5.1	23	92	2	177	32	22	19	25	1.97
3452224--3452290	20	3.3	20	93	0	116	32	20	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3452224--3452279	11	5.5	11	71	16	57	32	19	12	35	1.89
3452327--3452374	25	1.9	25	86	0	69	25	16	25	33	1.96
3455000--3455156	77	2.0	77	96	0	287	30	21	21	26	1.98
3459929--3459992	31	2.1	31	90	0	101	25	23	15	35	1.94
3460207--3460302	46	2.1	47	90	2	149	30	19	18	31	1.96
3460205--3460303	23	4.2	23	86	2	135	29	20	18	32	1.96
3460353--3460419	20	3.3	20	93	0	116	32	20	11	34	1.90
3460353--3460408	11	5.5	11	71	16	57	32	19	12	35	1.89
3460456--3460503	25	1.9	25	86	0	69	25	16	25	33	1.96
3462195--3462306	27	4.1	27	82	8	113	37	22	23	16	1.94
3465902--3465977	38	2.0	38	94	0	134	26	31	13	28	1.93
3469752--3469864	27	4.1	27	82	10	124	37	22	23	17	1.94
3469759--3469864	28	3.9	26	82	13	108	36	20	23	18	1.95
3469752--3469864	55	2.1	54	85	8	149	37	22	23	17	1.94
3473979--3474025	17	2.7	17	78	15	51	42	14	0	42	1.46
3474513--3474634	51	2.4	52	80	10	135	26	20	11	41	1.86
3474663--3474721	28	2.1	28	93	3	102	49	18	8	23	1.75
3475127--3475172	23	2.0	23	86	0	65	4	17	4	73	1.15
3475835--3475863	13	2.1	14	93	6	51	44	3	0	51	1.18
3484759--3484799	13	3.2	13	89	0	64	19	31	31	17	1.95
3487077--3487135	24	2.5	24	86	5	75	33	28	15	22	1.94
3491251--3491290	20	2.0	20	95	0	71	25	7	15	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3494613--3494650	18	2.2	17	90	4	58	13	5	2	78	1.02
3498643--3498845	49	4.1	49	92	0	343	35	8	26	29	1.87
3500659--3500716	29	2.0	29	100	0	116	13	3	13	68	1.33
3500665--3500723	29	2.1	28	84	9	77	13	8	10	67	1.41
3509957--3510259	40	7.6	40	89	3	380	27	28	20	24	1.99
3519581--3519701	39	3.1	39	96	0	215	20	23	31	23	1.98
3529870--3529912	20	2.2	20	100	0	86	39	9	13	37	1.78
3529870--3529921	20	2.7	19	91	8	72	40	11	11	36	1.78
3530542--3530671	47	2.8	47	87	0	170	31	28	16	23	1.96
3534427--3534464	19	2.0	20	89	5	60	18	2	2	76	1.02
3534424--3534486	25	2.5	25	79	7	74	20	4	3	71	1.18
3535723--3535756	15	2.2	16	89	5	52	41	2	0	55	1.15
3536770--3537011	40	6.1	39	78	5	229	21	25	19	34	1.96
3540767--3540814	25	1.9	25	86	0	69	33	25	16	25	1.96
3540851--3540897	20	2.3	20	96	0	85	34	10	21	34	1.88
3540946--3541050	23	4.4	24	91	3	151	31	20	20	28	1.97
3541232--3541295	31	2.1	31	93	0	110	37	15	23	23	1.93
3548882--3548937	11	5.5	11	71	16	57	35	12	19	32	1.89
3548871--3548937	20	3.3	20	93	0	116	34	11	20	32	1.90
3548988--3549060	23	3.1	23	90	3	110	28	19	19	32	1.96
3548986--3549081	24	4.0	24	85	6	124	28	19	20	31	1.97
3550357--3550381	12	2.1	12	100	0	50	56	0	8	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3554231--3554590	46	7.6	48	74	13	229	29	18	26	24	1.98
3554465--3554590	47	2.6	47	81	7	130	27	17	27	26	1.98
3559025--3559051	5	5.4	5	100	0	54	22	0	0	77	0.76
3562723--3562830	43	2.5	43	82	5	130	31	22	14	31	1.94
3563723--3563783	32	1.9	32	89	0	95	31	21	21	26	1.98
3564275--3564395	27	4.5	27	85	0	152	28	13	19	38	1.89
3566265--3566414	41	3.6	41	77	10	162	22	22	28	27	1.99
3566245--3566414	41	4.2	40	74	18	161	22	22	27	27	1.99
3568672--3568811	31	4.5	31	90	0	208	30	25	16	27	1.97
3569761--3569825	27	2.4	27	86	0	94	18	24	20	36	1.94
3569879--3570162	27	10.4	27	75	8	173	32	8	19	39	1.82
3570114--3570246	54	2.5	54	86	0	167	39	8	21	30	1.82
3570140--3570270	27	4.9	27	90	0	172	39	8	23	28	1.84
3578514--3578703	50	3.8	48	77	10	186	29	25	17	27	1.98
3584432--3584670	49	4.8	49	79	3	253	28	25	17	28	1.97
3587104--3587335	49	4.7	49	79	3	248	25	17	25	31	1.97
3587103--3587381	150	1.9	150	85	3	391	26	17	26	30	1.97
3592180--3592247	11	6.5	10	72	21	59	76	1	19	2	0.99
3592180--3592247	5	13.0	5	75	20	59	76	1	19	2	0.99
3592180--3592245	6	11.3	6	74	19	52	77	1	18	3	0.98
3592170--3592240	37	1.9	37	86	11	101	76	2	18	2	1.04
3592169--3592249	37	2.2	37	80	12	96	75	2	19	2	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3592295--3592325	12	2.6	12	100	0	62	45	12	16	25	1.83
3594506--3594608	30	3.5	29	75	9	93	29	23	16	31	1.96
3598047--3598299	68	3.8	64	76	12	212	24	28	16	30	1.97
3598960--3599020	30	2.0	30	83	0	77	31	22	4	40	1.75
3601183--3601708	101	5.3	100	82	3	605	26	18	26	28	1.98
3601183--3601721	49	10.8	49	80	5	598	26	18	26	28	1.98
3601183--3601715	150	3.6	150	98	0	1021	26	18	26	28	1.98
3606498--3606712	46	4.6	46	73	15	158	28	19	28	23	1.98
3611393--3611446	27	2.0	27	100	0	108	48	14	14	22	1.81
3615819--3615969	27	5.6	27	84	3	160	28	28	15	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161