genome.fa.s22.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  14  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4665332--4665362	11	2.8	11	90	0	53	32	0	0	67	0.91
4665377--4665401	9	2.8	9	100	0	50	68	0	0	32	0.90
4665998--4666056	32	1.9	32	86	6	86	50	6	0	42	1.28
4665978--4666066	30	2.9	30	76	14	92	46	11	0	42	1.39
4666303--4666354	25	2.1	25	100	0	104	38	13	15	32	1.86
4683165--4683262	50	2.0	50	91	0	160	26	21	31	20	1.98
4683183--4683346	84	2.0	84	86	0	229	24	21	32	20	1.98
4683267--4683489	50	4.5	50	77	3	191	27	22	28	21	1.99
4683267--4683482	100	2.2	99	80	5	231	27	23	28	20	1.99
4685645--4685772	25	5.2	25	72	9	100	31	18	24	25	1.98
4688030--4688108	25	3.3	25	63	10	65	31	29	6	32	1.82
4687980--4688145	47	3.6	47	89	1	237	27	30	8	33	1.87
4698088--4698239	64	2.4	64	87	0	214	31	25	18	25	1.97
4698195--4698263	24	2.9	24	86	0	84	30	26	18	24	1.98
4699628--4699689	32	2.1	31	82	11	76	40	1	4	53	1.32
4703539--4703578	20	2.0	20	100	0	80	40	25	10	25	1.86
4713624--4713674	6	8.5	6	78	8	59	78	3	1	15	0.99
4713624--4713681	30	1.9	30	86	6	82	77	5	1	15	1.02
4720597--4720772	96	1.8	96	95	0	316	34	14	16	34	1.90
4722842--4722874	16	2.1	16	94	0	57	36	6	6	51	1.51
4728842--4728907	33	2.0	33	93	0	114	34	34	10	19	1.86
4734439--4734501	30	2.1	30	96	0	117	34	25	7	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4746827--4746883	18	3.2	17	73	11	53	40	14	17	28	1.88
4748027--4748076	22	2.2	22	82	10	57	48	20	4	28	1.67
4749623--4749673	16	3.1	17	76	21	54	74	0	15	9	1.06
4749990--4750058	35	2.0	35	88	0	102	26	26	0	47	1.52
4751999--4752130	66	2.0	66	91	2	212	25	28	5	40	1.77
4752225--4752346	50	2.5	49	87	1	163	30	31	14	22	1.94
4756257--4756348	39	2.3	39	88	5	132	26	28	21	23	1.99
4756257--4756401	40	3.6	41	80	11	167	25	27	22	24	2.00
4787718--4787758	21	2.0	21	85	9	57	56	0	14	29	1.39
4788065--4788329	43	6.2	43	80	1	275	26	27	18	27	1.98
4791188--4791613	107	3.9	107	85	8	533	28	10	10	50	1.70
4791677--4791837	83	1.9	83	92	2	270	29	8	9	52	1.65
4791688--4791858	83	2.1	83	91	3	247	29	8	11	50	1.68
4791760--4792042	106	2.7	107	93	2	471	29	11	10	48	1.73
4792623--4792671	7	6.9	7	76	4	53	32	46	0	20	1.51
4792633--4792674	15	2.9	15	89	3	59	35	47	0	16	1.47
4792689--4792735	15	3.3	15	76	8	53	38	31	0	29	1.58
4792993--4793033	14	2.9	14	85	7	55	36	39	0	24	1.56
4792993--4793036	15	3.0	15	90	3	63	36	40	0	22	1.54
4793291--4793786	114	4.4	114	83	4	581	27	24	20	26	1.99
4793291--4793786	229	2.2	227	83	2	593	27	24	20	26	1.99
4793686--4793841	73	2.2	71	88	2	222	24	25	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4796185--4796261	28	2.8	28	83	0	100	29	24	25	19	1.98
4796217--4796270	28	1.9	28	92	0	90	29	24	22	24	1.99
4796639--4796813	27	6.6	27	81	7	171	19	22	16	41	1.90
4796639--4796813	53	3.3	54	84	4	198	19	22	16	41	1.90
4796637--4796792	80	2.0	79	83	3	197	19	23	17	40	1.91
4800206--4800244	20	2.1	19	90	9	62	28	23	0	48	1.51
4803476--4803800	27	12.2	26	75	11	223	20	22	17	39	1.92
4803476--4803800	53	6.1	52	78	10	275	20	22	17	39	1.92
4803489--4803800	80	3.9	78	77	9	315	19	22	18	39	1.92
4809500--4809541	21	2.0	20	82	13	50	45	14	4	35	1.66
4814464--4814522	26	2.3	26	84	0	73	23	27	23	25	2.00
4816901--4816934	18	2.0	18	88	11	54	32	5	0	61	1.20
4820822--4820882	26	2.5	24	76	19	72	22	24	21	31	1.98
4821745--4821800	19	2.9	19	70	15	53	37	5	17	39	1.73
4824971--4825094	27	4.6	27	93	2	131	29	28	14	27	1.95
4824971--4825094	55	2.3	54	91	1	194	29	28	14	27	1.95
4833099--4833550	27	16.6	27	96	0	769	30	28	14	25	1.95
4835288--4835386	40	2.5	40	82	9	121	32	21	32	14	1.93
4835348--4835393	20	2.3	20	88	7	67	26	21	41	10	1.86
4835369--4835448	40	2.0	40	80	9	92	35	20	30	15	1.93
4835587--4835642	28	2.0	28	100	0	112	35	21	14	28	1.92
4839841--4839897	27	2.1	27	90	0	87	29	12	21	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4844384--4844484	51	2.0	51	88	0	148	36	21	8	32	1.85
4849797--4849864	29	2.3	29	82	5	84	27	29	13	29	1.94
4849686--4850013	174	1.9	174	98	0	629	30	24	14	30	1.95
4849966--4850044	29	2.7	30	82	13	110	29	30	15	25	1.96
4857965--4858032	29	2.3	29	80	5	75	29	32	11	26	1.92
4858135--4858213	29	2.7	30	80	13	101	29	30	16	24	1.96
4862074--4862258	40	4.6	40	88	0	262	17	20	27	34	1.95
4863803--4863827	12	2.1	12	100	0	50	44	0	8	48	1.32
4870526--4870622	50	1.9	50	91	0	158	45	22	2	29	1.64
4871271--4871420	79	1.9	79	91	2	248	34	19	12	34	1.88
4877122--4877219	25	4.0	25	70	21	91	35	23	23	17	1.95
4877670--4877713	5	8.6	5	85	5	61	40	18	0	40	1.50
4881485--4881614	50	2.6	50	83	0	152	21	30	22	26	1.99
4881524--4881630	50	2.1	50	82	0	133	21	31	19	27	1.97
4884593--4884644	20	2.6	19	82	11	61	36	15	7	40	1.76
4884706--4884755	20	2.5	20	78	12	59	42	6	6	46	1.53
4885991--4886025	16	2.2	16	90	10	54	22	0	2	74	0.95
4905429--4905490	31	1.9	31	84	12	81	38	6	6	48	1.55
4917456--4917672	114	1.9	114	98	0	416	32	18	11	37	1.86
4921585--4921852	110	2.4	110	84	1	331	27	23	14	34	1.93
4924921--4924958	19	2.0	19	94	0	67	50	5	5	39	1.48
4926078--4926116	10	3.5	11	83	16	53	66	0	2	30	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4926098--4926148	16	3.1	16	78	10	59	68	0	0	31	0.90
4932809--4932840	3	10.7	3	100	0	64	31	0	0	68	0.90
4933487--4933529	20	2.2	20	91	0	68	20	4	46	27	1.71
4934392--4934540	7	20.9	7	77	11	97	43	33	0	22	1.58
4934975--4935065	40	2.3	40	88	3	130	24	26	23	26	2.00
4935117--4935260	40	3.6	40	89	0	225	29	25	18	27	1.98
4934958--4935333	195	1.9	194	86	1	529	29	22	18	29	1.97
4945653--4945680	8	3.5	8	100	0	56	57	10	0	32	1.33
4945578--4945748	90	1.9	90	96	0	315	49	18	5	26	1.68
4947822--4947862	20	1.9	23	85	14	61	24	12	14	48	1.78
4951356--4951384	8	3.6	8	100	0	58	37	13	24	24	1.91
4954673--4954859	51	3.7	50	78	8	209	31	27	17	24	1.97
4954671--4954855	102	1.8	102	87	5	268	31	27	17	24	1.97
4964709--4964733	9	2.8	9	100	0	50	40	0	0	60	0.97
4964890--4964933	19	2.3	19	88	0	61	59	6	9	25	1.53
4966210--4966272	22	2.9	20	80	17	56	55	0	6	38	1.25
4967867--4968514	143	4.5	143	87	0	886	28	22	20	29	1.98
4969413--4969454	22	2.0	22	90	4	68	2	14	0	83	0.75
4974196--4974262	26	2.6	25	76	9	64	67	2	4	25	1.24
4977157--4977194	19	2.0	19	94	0	67	28	31	2	36	1.71
4978297--4978466	36	4.7	35	77	6	153	27	14	13	44	1.83
4981548--4981644	40	2.4	40	89	3	142	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4981597--4981687	47	1.9	47	90	0	146	26	27	21	24	1.99
4986172--4986226	22	2.5	22	93	0	92	27	20	27	25	1.99
4986963--4987001	14	2.9	15	78	21	50	17	10	0	71	1.12
4994419--4994447	13	2.1	14	93	6	51	79	0	6	13	0.93
4995809--4995876	26	2.6	26	79	9	84	38	7	20	33	1.81
4997705--4997774	34	2.1	34	88	0	104	30	14	18	37	1.90
5002855--5002883	12	2.3	13	94	5	51	65	6	6	20	1.40
5005591--5005646	26	2.2	26	84	9	71	39	19	3	37	1.69
5039283--5039317	16	2.3	15	90	5	52	62	2	2	31	1.24
5039432--5039491	23	2.9	20	70	15	59	56	5	6	31	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161