genome.fa.s22.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  33  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10162729--10162904	34	5.2	34	74	13	125	39	1	15	43	1.57
10162751--10162908	84	1.9	84	86	2	228	39	1	14	44	1.53
10162851--10163343	38	14.4	34	75	17	334	41	0	10	47	1.41
10162857--10163258	56	7.0	56	83	12	516	41	0	9	48	1.40
10162891--10162998	22	5.1	22	73	18	95	39	0	11	48	1.45
10163009--10163054	22	2.1	22	95	0	83	41	0	10	47	1.38
10163065--10163110	22	2.1	22	95	0	83	41	0	10	47	1.38
10163105--10163269	4	39.2	4	67	25	58	43	0	7	49	1.30
10162729--10163315	9	63.4	9	67	21	120	40	0	11	47	1.45
10167707--10167738	16	1.9	17	93	6	57	40	21	0	37	1.54
10168148--10168385	41	5.8	41	76	9	182	36	25	21	16	1.94
10168164--10168385	82	2.7	82	82	4	234	38	25	20	15	1.92
10168443--10168558	40	2.9	40	75	10	112	18	25	23	31	1.97
10173565--10173625	21	3.0	19	75	13	52	0	31	3	65	1.09
10173592--10173659	10	6.4	10	73	15	57	1	19	5	73	1.11
10177114--10177163	25	2.0	25	88	0	73	18	28	20	34	1.95
10179119--10179234	57	2.0	57	100	0	232	42	5	10	42	1.61
10180038--10180089	22	2.4	22	93	0	95	46	9	9	34	1.69
10180272--10180304	13	2.5	13	90	0	57	15	12	36	36	1.84
10180366--10180472	34	3.1	34	74	5	108	29	19	14	35	1.92
10181297--10181331	18	1.9	18	88	11	54	37	8	2	51	1.47
10182969--10183004	18	2.0	18	88	0	54	50	8	0	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10183058--10183099	5	8.0	5	84	10	57	54	2	2	40	1.26
10183539--10183578	20	2.0	20	100	0	80	45	5	10	40	1.60
10183781--10183858	5	15.6	5	83	12	90	43	1	1	53	1.16
10184820--10184874	25	2.2	25	83	0	65	20	27	18	34	1.95
10184857--10184918	22	2.8	21	78	9	61	19	25	17	37	1.94
10196981--10197016	18	2.0	18	89	10	56	33	2	2	61	1.25
10197024--10197062	12	3.2	12	88	3	51	46	2	0	51	1.14
10210946--10210975	6	4.8	6	95	4	51	30	0	0	70	0.88
10213493--10213587	31	3.1	31	86	3	129	26	7	18	47	1.75
10213707--10213852	43	3.4	43	84	2	177	28	17	21	32	1.96
10216595--10216653	10	5.5	11	75	20	54	69	0	0	30	0.89
10216603--10216640	14	2.7	15	80	12	53	68	0	0	31	0.90
10229352--10229488	41	3.3	41	86	3	159	27	20	20	31	1.97
10229900--10229942	21	2.0	22	81	4	52	48	4	2	44	1.36
10233344--10233426	30	2.8	30	90	0	130	46	15	7	30	1.73
10233344--10233447	30	3.3	30	87	5	118	48	14	6	30	1.70
10236898--10236963	13	5.1	13	75	0	51	36	25	6	31	1.81
10241036--10241118	30	2.8	30	90	0	130	48	14	4	32	1.65
10241465--10241523	28	2.2	26	84	6	73	30	16	3	49	1.63
10242341--10242522	91	2.0	91	84	2	240	33	23	13	29	1.93
10247625--10247661	18	2.1	18	90	5	58	40	2	0	56	1.13
10256030--10256063	17	2.0	17	88	11	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10283225--10283263	17	2.3	19	79	20	50	38	0	10	51	1.36
10283288--10283337	20	2.4	22	80	10	59	56	4	2	38	1.30
10289962--10290100	10	15.4	9	65	23	53	65	1	2	30	1.16
10289959--10290101	19	7.9	18	68	20	70	65	1	2	30	1.16
10290074--10290111	19	2.0	19	89	0	58	60	7	2	28	1.38
10290350--10290439	10	9.0	10	68	16	53	30	3	1	65	1.16
10290350--10290420	29	2.5	27	84	11	81	26	4	1	67	1.17
10290403--10290476	28	2.6	28	71	12	71	32	1	0	66	1.00
10292165--10292198	12	2.8	12	81	0	50	11	17	44	26	1.83
10295205--10295390	93	2.0	93	98	0	363	41	8	19	30	1.81
10295591--10295727	69	2.0	68	83	8	170	24	18	27	29	1.98
10297655--10297749	21	4.6	21	65	12	61	45	18	21	14	1.85
10297655--10297749	42	2.3	41	82	8	129	45	18	21	14	1.85
10307630--10307669	20	2.0	20	85	9	55	62	0	5	32	1.17
10315148--10315173	13	2.0	13	100	0	52	38	0	15	46	1.46
10333266--10333308	22	1.9	23	85	4	61	53	9	18	18	1.70
10335086--10335218	62	2.1	62	98	0	257	42	7	19	30	1.79
10335781--10335826	25	2.0	22	83	12	56	34	0	0	65	0.93
10340231--10340273	16	2.6	16	88	7	59	83	11	2	2	0.83
10340749--10340777	14	2.1	14	100	0	58	55	0	6	37	1.27
10341377--10341405	14	2.1	14	100	0	58	37	6	0	55	1.27
10341823--10341900	27	2.9	27	92	0	120	15	30	26	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10341933--10341967	18	1.9	18	94	0	61	0	2	8	88	0.61
10350035--10350073	18	2.1	18	85	4	51	56	12	7	23	1.62
10355282--10355322	21	2.0	21	85	4	57	29	17	29	24	1.97
10355836--10356044	69	3.0	70	83	3	255	36	16	21	25	1.94
10380277--10380994	364	2.0	354	95	2	1301	33	11	23	31	1.90
10390673--10390711	20	2.0	20	89	0	60	15	17	28	38	1.91
10391037--10391121	38	2.2	39	87	2	127	27	12	20	40	1.89
10392583--10392631	2	24.5	2	100	0	98	48	0	51	0	1.00
10394720--10394822	53	1.9	53	92	0	170	37	0	12	49	1.41
10394720--10394803	29	3.1	27	64	14	66	33	0	14	52	1.42
10394958--10395249	48	5.9	48	83	7	334	22	19	22	34	1.96
10395095--10395276	57	3.4	56	75	14	193	21	17	24	36	1.95
10395047--10395390	105	3.3	105	85	4	457	21	18	23	36	1.95
10396675--10396707	11	3.1	11	86	4	50	60	12	0	27	1.32
10398060--10398141	7	10.9	7	78	18	76	71	0	4	23	1.04
10398067--10398143	17	4.2	19	76	16	74	72	0	3	23	1.01
10398067--10398141	4	18.5	4	74	20	59	73	0	4	22	1.00
10402393--10402468	39	1.9	39	94	0	134	23	27	18	30	1.98
10402432--10402662	48	4.8	48	84	2	284	25	20	17	35	1.95
10406005--10406039	2	17.5	2	100	0	70	0	51	0	48	1.00
10407501--10407585	38	2.2	38	87	2	125	40	20	12	27	1.89
10410302--10410995	48	14.5	48	73	14	438	34	23	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10410535--10410611	39	2.0	39	97	0	145	33	20	23	22	1.97
10410574--10410868	105	2.8	104	92	3	479	36	23	18	22	1.95
10420299--10420580	138	2.0	139	99	0	557	40	12	19	28	1.87
10436399--10436429	16	1.9	16	93	0	53	29	12	12	45	1.80
10439061--10439121	31	2.0	31	83	0	77	24	8	22	44	1.80
10438628--10439162	184	2.9	184	87	2	736	28	8	19	43	1.80
10459911--10459959	20	2.4	21	80	13	57	40	8	6	44	1.59
10470012--10470098	45	2.0	45	82	11	108	62	5	12	19	1.50
10476425--10476470	19	2.3	21	85	14	62	21	4	0	73	1.00
10476414--10476470	19	2.9	18	78	19	60	21	3	0	75	0.95
10479325--10479383	28	2.1	27	81	9	66	47	11	3	37	1.57
10479954--10480000	20	2.3	20	85	0	58	17	2	4	76	1.04
10479964--10480013	23	2.2	22	78	21	59	20	0	4	76	0.95
10481256--10481314	5	11.4	5	79	13	66	76	0	1	22	0.88
10481248--10481308	20	3.0	20	77	17	63	73	0	1	24	0.92
10481249--10481314	26	2.5	28	76	16	77	75	0	1	22	0.88
10489018--10489059	2	21.0	2	95	0	75	47	0	52	0	1.00
10491322--10491371	24	2.1	24	88	0	73	44	2	20	34	1.63
10495851--10495883	17	1.9	17	100	0	66	36	12	12	39	1.80
10498082--10498142	30	2.0	30	100	0	122	45	13	6	34	1.69
10507313--10508138	44	18.6	44	68	14	305	26	21	20	30	1.98
10507260--10507691	218	2.0	218	88	2	636	27	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10507504--10508265	404	1.9	403	90	1	1233	27	22	19	31	1.98
10508057--10508155	45	2.2	45	83	3	119	25	24	16	34	1.95
10508285--10508327	21	2.0	21	86	0	59	20	32	6	39	1.80
10509907--10510030	44	2.8	45	90	3	196	16	20	20	42	1.89
10519791--10519900	40	2.8	39	81	4	130	39	20	19	21	1.93
10522369--10522769	148	2.7	149	89	2	601	44	14	11	28	1.81
10525703--10525788	43	2.0	43	88	4	129	34	9	10	45	1.71
10526167--10526406	43	5.6	42	81	5	275	21	16	30	32	1.95
10526167--10526398	86	2.7	84	86	5	313	21	16	30	31	1.95
10526167--10526405	129	1.9	129	83	1	318	21	16	30	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161