genome.fa.s22.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  143  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44582728--44583005	73	3.8	73	80	4	301	29	12	21	35	1.91
44582728--44583004	147	1.9	147	82	3	351	29	12	22	35	1.91
44582728--44583053	147	2.2	147	79	5	338	29	12	22	36	1.90
44584969--44584993	4	6.2	4	100	0	50	24	0	24	52	1.48
44605158--44605189	5	6.4	5	100	0	64	81	0	18	0	0.70
44609912--44609940	14	2.1	14	100	0	58	41	13	27	17	1.87
44613688--44613861	76	2.3	75	87	1	240	32	24	19	23	1.97
44613801--44613981	42	4.5	42	74	15	182	34	25	17	23	1.96
44613728--44614083	120	3.1	120	88	7	491	33	26	16	22	1.95
44613846--44614019	75	2.3	76	88	3	260	34	27	16	21	1.95
44613966--44614144	27	5.5	33	73	21	139	31	29	18	20	1.96
44613888--44614149	102	2.5	102	91	3	407	31	28	19	20	1.97
44618230--44618307	37	2.1	36	95	2	138	16	11	15	56	1.67
44630782--44630821	18	2.1	20	86	9	57	55	7	2	35	1.42
44636520--44636663	41	3.5	41	90	3	220	25	28	19	26	1.99
44644510--44644716	41	5.1	41	92	1	337	26	26	18	28	1.98
44644819--44644974	78	2.0	78	97	0	294	35	17	6	40	1.76
44647719--44647764	18	2.6	18	80	19	60	45	6	15	32	1.71
44674872--44675203	44	7.6	41	77	12	195	28	20	23	27	1.99
44674921--44675212	89	3.3	88	78	13	268	28	20	23	27	1.99
44675000--44675212	45	4.8	44	85	2	275	29	19	24	26	1.99
44675000--44675212	89	2.4	89	85	4	279	29	19	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44675388--44675466	19	4.0	19	73	14	79	41	10	12	35	1.77
44676795--44676991	98	2.0	98	96	0	367	29	10	23	36	1.88
44681895--44681938	18	2.5	17	78	10	52	40	15	2	40	1.60
44681895--44681945	18	2.9	17	75	18	50	37	13	3	45	1.63
44684922--44684970	24	2.0	24	88	0	71	46	10	4	38	1.57
44691074--44692029	497	1.9	497	97	0	1822	30	9	21	38	1.85
44696509--44696560	24	2.2	24	89	0	77	50	9	3	36	1.54
44707185--44707219	15	2.4	14	86	9	52	45	31	0	22	1.53
44707234--44707282	7	7.0	7	76	0	53	44	34	0	20	1.52
44707143--44707282	14	9.8	14	73	12	70	44	32	0	22	1.58
44707211--44707287	28	2.7	28	84	7	102	46	28	1	23	1.60
44707234--44707287	14	3.9	14	85	4	74	46	31	0	22	1.52
44710570--44710902	77	4.3	76	77	8	309	46	9	11	31	1.73
44711006--44711045	16	2.5	16	87	0	53	47	5	7	40	1.54
44711036--44711179	75	2.0	68	85	11	193	41	4	9	45	1.55
44711115--44711153	16	2.4	16	91	0	60	35	0	7	56	1.28
44711380--44711436	20	2.9	20	73	19	57	66	8	3	21	1.34
44711402--44711432	13	2.3	14	94	5	55	67	12	0	19	1.22
44711450--44711482	16	2.1	16	100	0	66	69	12	0	18	1.18
44711407--44711495	44	2.1	40	82	14	99	58	7	0	33	1.27
44711724--44711760	19	1.9	19	89	10	58	45	13	8	32	1.73
44711687--44711891	75	2.7	76	80	7	245	45	10	12	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44712222--44712332	41	2.7	41	88	1	170	32	27	21	18	1.96
44713572--44713627	25	2.2	26	90	3	87	30	12	19	37	1.89
44716863--44716893	16	1.9	16	100	0	62	9	19	32	38	1.84
44719327--44719393	9	7.4	9	80	6	82	43	17	10	28	1.82
44719326--44719393	27	2.5	27	85	0	91	44	17	10	27	1.81
44724670--44724696	5	5.4	5	100	0	54	40	18	18	22	1.91
44725288--44725327	20	2.0	20	90	0	62	27	10	12	50	1.72
44725273--44725339	34	1.9	35	90	3	109	31	8	13	46	1.74
44725267--44725343	14	5.0	15	71	20	52	33	9	14	42	1.77
44725580--44725626	23	2.0	23	83	8	58	57	4	10	27	1.51
44726243--44726279	9	4.1	9	85	0	56	29	8	13	48	1.71
44729650--44729687	19	2.0	19	100	0	76	31	26	10	31	1.90
44731605--44731647	21	2.0	21	82	8	52	30	4	9	55	1.52
44733139--44733165	14	1.9	14	100	0	54	29	0	7	62	1.22
44735676--44735795	36	3.3	35	82	11	136	14	15	30	40	1.86
44738848--44739144	146	2.0	147	95	0	533	26	19	15	39	1.91
44744534--44744565	14	2.3	14	100	0	64	6	15	46	31	1.71
44747120--44747273	42	3.7	41	76	8	157	16	34	32	16	1.92
44747120--44747283	85	1.9	85	86	2	231	17	34	32	15	1.91
44747291--44747369	24	3.3	24	85	5	106	20	35	37	6	1.78
44747588--44747786	42	4.7	41	75	11	168	20	35	27	17	1.94
44747674--44747785	43	2.6	43	83	9	133	21	36	25	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44749093--44749124	14	2.3	14	100	0	64	6	15	46	31	1.71
44749297--44749364	30	2.3	29	80	7	75	29	1	5	63	1.27
44761755--44761863	46	2.4	44	84	13	134	37	4	3	54	1.39
44761790--44761916	45	2.8	45	81	11	134	40	7	3	49	1.46
44761787--44761916	24	5.7	21	74	19	84	39	6	3	50	1.45
44765853--44765998	41	3.6	40	74	7	125	18	21	26	34	1.96
44766265--44766669	77	5.3	77	77	8	274	33	9	9	46	1.70
44766323--44766669	154	2.3	154	83	4	414	33	9	9	47	1.70
44768173--44768332	76	2.1	78	83	6	202	36	7	18	36	1.79
44771355--44772232	109	8.1	109	95	0	1472	33	16	17	32	1.93
44772505--44772540	14	2.6	15	87	12	51	55	0	2	41	1.14
44783253--44783317	24	2.7	23	86	11	87	60	6	1	32	1.31
44783827--44783860	17	2.0	17	88	0	50	58	23	2	14	1.50
44787006--44787465	82	5.6	82	91	3	662	19	18	28	33	1.95
44787007--44787541	41	13.1	41	81	3	553	19	18	28	33	1.96
44787568--44787622	16	3.8	15	77	11	53	41	3	3	50	1.37
44787915--44787953	14	2.7	15	84	11	55	33	0	25	41	1.56
44787958--44788048	22	4.2	22	69	9	62	23	2	39	35	1.67
44788232--44788269	14	2.7	15	88	12	62	26	0	31	42	1.56
44789226--44789452	43	5.3	43	86	0	294	27	30	18	22	1.98
44789857--44789908	23	2.3	23	79	0	59	34	7	30	26	1.85
44792098--44792122	8	3.1	8	100	0	50	40	24	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44792540--44792586	19	2.5	19	92	0	85	38	8	10	42	1.70
44794349--44794401	26	2.0	26	96	0	97	28	9	7	54	1.59
44794570--44794753	87	2.1	90	87	4	266	41	28	1	28	1.63
44794774--44794816	21	2.0	22	81	4	52	27	44	2	25	1.66
44794849--44794881	14	2.3	15	94	5	59	36	33	0	30	1.58
44795295--44795439	41	3.5	41	87	2	184	31	24	19	25	1.98
44795898--44795948	16	3.2	16	77	0	57	13	45	13	27	1.82
44797431--44797483	19	2.8	19	82	0	52	39	1	0	58	1.09
44797456--44797496	19	2.2	19	86	8	57	39	4	0	56	1.21
44797608--44797632	12	2.1	12	100	0	50	52	16	0	32	1.44
44797631--44797659	12	2.4	12	100	0	58	48	10	0	41	1.37
44798193--44798352	43	3.7	43	84	0	196	29	18	29	22	1.98
44798801--44798839	19	2.2	19	86	9	55	41	5	15	38	1.69
44801077--44801164	36	2.5	35	86	3	113	39	28	13	18	1.88
44803470--44803503	18	1.9	18	88	5	52	61	0	14	23	1.33
44803683--44803725	18	2.3	18	84	11	52	60	4	0	34	1.17
44814448--44814573	62	2.0	62	98	0	243	39	15	7	37	1.76
44816285--44816362	41	1.9	41	100	0	156	43	15	15	25	1.86
44816951--44816984	11	2.9	12	82	8	52	50	0	23	26	1.50
44819462--44819513	21	2.4	21	83	6	59	55	5	1	36	1.35
44821624--44821705	25	3.3	25	76	6	87	19	21	19	39	1.93
44821624--44821720	50	1.9	50	87	8	144	18	24	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44821644--44821723	25	3.2	26	80	5	101	21	25	18	35	1.96
44821814--44821874	25	2.4	25	78	8	70	19	22	19	37	1.94
44823584--44823911	26	12.7	26	85	3	428	39	21	14	24	1.90
44824106--44824170	27	2.4	27	82	9	80	18	24	21	35	1.96
44827974--44828032	18	3.3	17	76	9	55	50	1	28	18	1.56
44836992--44837045	26	2.0	27	89	3	83	62	0	0	37	0.95
44837967--44838004	18	2.1	19	90	9	62	44	39	5	10	1.61
44838183--44838230	19	2.3	21	82	13	55	79	10	6	4	1.05
44839062--44839170	56	2.0	55	88	1	164	21	22	12	43	1.86
44841409--44841433	13	1.9	13	100	0	50	32	4	24	40	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161