genome.fa.s22.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  31  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9599428--9599479	13	4.0	12	83	16	68	65	0	34	0	0.93
9599429--9599482	16	3.2	16	89	7	81	66	0	33	0	0.92
9607377--9607484	4	25.2	4	77	17	78	67	0	31	0	0.97
9607380--9607504	38	3.2	36	76	17	117	67	0	32	0	0.97
9607381--9607524	45	3.2	45	80	11	136	65	0	33	0	0.97
9607378--9607545	40	4.1	43	81	11	151	67	0	31	0	0.95
9607376--9607542	79	2.1	80	80	10	191	67	0	32	0	0.96
9607850--9607874	12	2.1	12	100	0	50	68	8	16	8	1.38
9613545--9613581	12	3.1	12	92	0	56	62	16	0	21	1.33
9613799--9613863	3	21.7	3	96	0	121	66	33	0	0	0.92
9613933--9613971	20	2.0	21	85	10	55	66	10	0	23	1.22
9613998--9614034	11	3.5	10	92	7	56	0	27	2	70	1.01
9614116--9614182	27	2.5	28	85	11	95	19	29	26	23	1.98
9614116--9614191	27	2.8	27	84	4	91	19	30	26	23	1.98
9614228--9614282	27	2.0	27	89	0	83	20	34	25	20	1.96
9614127--9614308	91	2.0	91	97	0	346	24	28	23	24	2.00
9614329--9614401	26	2.7	27	91	8	114	43	0	12	43	1.42
9616333--9616365	4	8.2	4	100	0	66	75	0	0	24	0.80
9620167--9620230	22	2.9	22	75	11	67	26	9	25	39	1.86
9621877--9621940	22	2.9	22	75	11	67	26	9	25	39	1.86
9626684--9626717	16	2.1	16	94	0	59	29	11	2	55	1.50
9626856--9626901	24	1.9	24	81	0	56	34	8	6	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9629135--9629180	9	4.8	10	77	20	53	23	19	8	47	1.77
9629135--9629181	19	2.5	19	86	6	60	25	19	8	46	1.77
9631876--9631925	6	8.2	6	77	16	50	80	0	18	2	0.82
9631868--9631929	19	3.0	20	79	9	72	79	0	19	1	0.82
9631863--9631925	32	1.9	32	84	9	83	79	0	17	3	0.86
9631876--9631929	25	2.1	26	80	13	67	79	0	18	1	0.82
9633018--9633289	45	6.1	45	81	5	264	30	20	22	26	1.98
9633018--9633500	90	5.5	90	73	10	385	31	18	22	27	1.97
9633314--9633500	45	4.2	45	87	0	257	31	16	23	28	1.96
9633095--9633574	211	2.3	211	89	0	710	32	17	22	27	1.96
9633436--9633579	76	1.9	76	85	2	200	36	18	20	24	1.95
9633570--9633707	44	3.1	44	69	6	116	31	27	22	18	1.97
9633517--9633757	89	2.7	89	86	0	329	31	25	21	20	1.98
9633917--9634198	44	6.6	41	71	11	156	28	19	19	32	1.96
9633913--9634201	129	2.2	129	85	2	375	29	19	19	31	1.96
9633956--9634375	44	9.6	43	69	13	194	31	19	19	29	1.96
9634224--9634336	45	2.6	43	78	4	118	32	19	19	28	1.96
9634047--9634375	179	1.9	175	82	6	412	32	19	19	28	1.96
9634840--9634870	16	1.9	16	100	0	62	6	48	12	32	1.67
9636179--9636224	24	1.9	24	81	0	56	34	8	6	50	1.59
9636581--9637023	107	4.1	107	100	0	886	33	15	13	38	1.86
9651486--9651523	11	3.5	11	85	0	58	21	13	10	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9656576--9656793	88	2.5	86	85	5	287	39	21	8	30	1.83
9656815--9656867	19	3.1	17	73	21	56	62	0	0	37	0.96
9656812--9656881	29	2.4	29	76	17	74	64	0	0	35	0.94
9656815--9656881	10	7.0	10	70	13	52	62	0	0	37	0.95
9656804--9656894	47	2.0	45	82	8	112	62	0	1	36	1.02
9657144--9657236	29	3.2	30	73	13	88	33	6	2	58	1.36
9657097--9657236	19	7.3	19	66	17	58	31	5	2	60	1.35
9657120--9657236	57	2.0	59	87	9	170	30	5	2	60	1.34
9673120--9673164	21	2.1	21	100	0	90	37	13	22	26	1.91
9678510--9678619	56	2.0	56	96	0	202	38	7	23	30	1.82
9678774--9678872	46	2.2	46	88	1	146	36	14	20	29	1.91
9681057--9681106	26	2.0	26	88	4	75	30	18	10	42	1.82
9685815--9685851	9	4.1	9	92	0	65	45	13	10	29	1.77
9689085--9689128	17	2.7	17	89	6	65	36	2	18	43	1.63
9689349--9689511	41	4.0	41	86	0	236	29	19	26	25	1.98
9689702--9689819	37	3.5	34	79	15	113	28	9	27	33	1.88
9689730--9689819	37	2.5	37	87	7	125	27	10	26	35	1.88
9691918--9692217	150	2.0	150	98	0	573	29	23	15	32	1.95
9701274--9701298	13	1.9	13	100	0	50	68	0	16	16	1.22
9702732--9702872	72	2.0	72	92	0	237	34	18	17	29	1.94
9703329--9703369	22	1.9	21	85	5	55	60	2	4	31	1.30
9704822--9704916	44	2.2	44	96	0	172	24	23	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9704843--9705314	44	10.6	42	75	11	263	27	21	20	30	1.98
9704843--9705314	88	5.3	87	73	10	305	27	21	20	30	1.98
9705354--9705734	50	7.6	49	72	4	269	24	20	22	32	1.98
9705338--9705734	100	4.0	100	88	0	578	24	20	21	32	1.98
9705747--9705841	50	1.9	50	85	8	131	29	21	17	31	1.96
9706306--9706378	38	1.9	38	88	0	110	31	27	15	26	1.95
9706397--9706475	25	3.3	23	74	11	70	17	27	21	32	1.96
9714546--9714578	17	1.9	17	88	11	50	39	3	0	57	1.14
9717232--9717295	5	12.8	5	96	0	119	39	18	0	42	1.51
9720108--9720150	22	2.0	22	86	9	61	60	2	9	27	1.40
9743438--9743669	121	1.9	121	88	0	347	31	21	19	27	1.98
9746386--9746618	121	1.9	121	89	0	358	28	21	21	28	1.99
9748116--9748212	48	2.0	48	92	4	160	48	15	12	22	1.78
9749006--9749049	23	1.9	23	85	0	61	18	9	22	50	1.75
9751035--9751077	21	2.0	21	90	0	68	39	4	18	37	1.72
9757527--9757584	22	2.6	22	81	7	64	41	17	5	36	1.72
9758607--9758638	16	2.0	16	93	0	55	28	0	15	56	1.40
9770316--9770367	17	2.9	17	77	5	50	67	0	30	1	1.02
9779680--9779705	1	26.0	1	100	0	52	0	0	0	100	0.00
9781407--9781444	18	2.1	18	85	9	51	13	15	10	60	1.59
9786804--9787167	181	2.0	181	94	1	631	28	25	20	26	1.99
9792399--9792433	17	2.1	17	94	0	61	45	34	2	17	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9805521--9805785	94	2.8	96	83	7	307	32	12	7	47	1.69
9808080--9808190	58	1.9	59	83	5	145	36	11	4	46	1.61
9808225--9808302	26	3.0	26	77	3	68	39	7	3	48	1.50
9814680--9814725	7	5.9	8	87	10	60	86	2	2	8	0.72
9814681--9814716	15	2.4	15	90	9	56	86	2	0	11	0.68
9815162--9815198	19	1.9	18	89	10	56	83	2	5	8	0.88
9816176--9816749	134	4.3	133	82	5	597	28	16	25	29	1.96
9816165--9816921	45	16.9	45	76	8	630	28	16	24	30	1.96
9817017--9817136	44	2.7	44	80	5	109	26	20	23	29	1.99
9817063--9817170	44	2.5	44	83	8	123	28	18	24	28	1.98
9818929--9819039	58	1.9	59	83	5	145	36	11	4	46	1.61
9819075--9819152	26	3.0	26	77	3	68	39	7	3	48	1.50
9828826--9828854	5	5.8	5	100	0	58	37	0	0	62	0.96
9835627--9835661	6	5.5	6	87	12	52	68	0	17	14	1.21
9840978--9841011	12	2.9	12	86	4	52	50	0	26	23	1.50
9852395--9852479	6	14.3	6	70	10	50	67	11	8	12	1.43
9852399--9852457	31	1.9	31	85	0	82	69	10	10	10	1.37
9852405--9852462	25	2.3	25	82	11	66	68	10	10	10	1.39
9852423--9852462	19	2.1	19	85	0	53	70	10	10	10	1.36
9853323--9853363	1	41.0	1	85	0	55	92	0	7	0	0.38
9853323--9853363	10	4.2	10	96	3	75	92	0	7	0	0.38
9853323--9853365	17	2.6	17	89	10	63	90	0	9	0	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9854967--9855002	14	2.6	15	87	12	51	8	13	0	77	0.98
9855904--9856061	3	52.7	3	100	0	316	33	0	0	66	0.92
9861812--9862388	88	6.6	88	92	0	938	27	22	24	25	2.00
9861838--9862145	44	7.0	42	65	15	124	28	24	23	23	2.00
9862350--9862428	40	2.0	40	84	0	104	26	21	25	26	1.99
9862262--9862516	128	2.0	128	88	0	375	26	21	25	25	2.00
9862174--9863477	220	6.0	216	66	16	681	25	22	25	25	2.00
9862387--9864868	88	28.2	88	95	0	3940	25	22	25	26	2.00
9864868--9865350	95	5.1	95	97	0	896	31	17	23	27	1.97
9865252--9865483	126	1.8	126	88	0	356	29	16	22	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161