genome.fa.s22.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  16  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5469301--5469332	16	2.0	16	100	0	64	25	0	18	56	1.42
5474783--5474821	13	3.0	13	100	0	78	38	30	15	15	1.88
5476279--5476322	22	2.0	22	100	0	88	27	22	22	27	1.99
5482774--5483057	138	2.1	138	93	1	489	46	6	7	40	1.57
5483096--5483164	20	3.4	20	93	2	111	40	7	5	46	1.55
5483136--5483282	75	2.0	75	82	2	179	29	15	8	46	1.75
5488830--5488859	15	2.0	15	100	0	60	33	6	26	33	1.83
5493024--5493072	25	2.0	25	100	0	98	44	2	8	44	1.45
5493135--5493407	138	2.0	138	89	4	417	44	5	8	41	1.59
5493385--5493530	74	2.0	75	90	2	233	30	15	9	44	1.78
5506181--5506231	24	2.0	27	88	11	81	33	0	13	52	1.41
5506187--5506240	24	2.2	24	80	12	56	31	1	18	48	1.59
5509466--5509518	26	2.0	26	88	0	79	32	20	28	18	1.97
5509593--5509834	32	7.6	32	77	6	197	37	22	19	20	1.95
5509593--5509804	96	2.2	96	80	6	241	38	23	18	20	1.93
5509836--5509907	26	2.8	26	84	0	99	37	27	20	13	1.91
5510006--5510087	24	3.5	23	83	5	92	47	23	8	20	1.77
5510109--5510397	27	10.8	27	78	2	271	24	20	20	34	1.97
5510635--5510694	27	2.2	27	94	5	104	16	13	20	50	1.78
5511389--5511418	15	1.9	16	93	6	53	50	0	50	0	1.00
5514261--5514290	16	1.9	16	93	6	53	30	0	20	50	1.49
5518160--5518202	20	2.2	20	86	0	59	6	32	25	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5518160--5518426	60	4.5	60	80	2	178	13	30	19	36	1.91
5522048--5522280	42	5.6	42	96	1	393	27	19	28	24	1.99
5532254--5532517	40	6.7	40	89	5	360	25	21	27	25	1.99
5532254--5532550	119	2.5	118	81	9	338	26	21	27	25	1.99
5535655--5535740	19	4.4	19	66	22	61	46	0	1	52	1.08
5535667--5535744	21	3.9	20	72	23	58	47	0	1	51	1.09
5535759--5535789	16	1.9	16	100	0	62	61	0	0	38	0.96
5535661--5535788	59	2.2	59	81	13	140	47	0	0	50	1.12
5540593--5540630	20	1.9	19	94	5	67	34	18	15	31	1.92
5541775--5542497	361	2.0	362	98	0	1394	35	19	8	36	1.83
5545627--5545659	17	1.9	17	93	0	57	63	18	9	9	1.49
5548779--5548817	12	3.2	12	85	0	51	20	23	5	51	1.67
5549084--5549258	50	3.5	50	85	1	226	21	29	21	28	1.98
5555827--5555851	8	3.1	8	100	0	50	24	0	0	76	0.80
5558329--5558961	50	12.7	50	86	1	815	25	20	31	22	1.98
5558333--5558961	249	2.5	249	85	2	717	25	20	31	22	1.98
5559382--5559415	17	2.0	17	100	0	68	23	17	11	47	1.81
5563222--5563504	50	5.7	50	81	1	300	27	22	28	21	1.99
5565404--5565567	50	3.3	50	86	0	229	18	28	25	26	1.98
5579194--5579455	39	6.7	40	88	7	337	24	27	22	25	2.00
5586419--5586584	83	2.0	83	97	0	314	27	20	12	39	1.89
5586844--5587070	113	2.0	113	97	0	427	41	15	21	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5587359--5587543	79	2.3	81	82	7	218	25	27	22	24	2.00
5587340--5587543	40	5.1	40	80	8	220	25	27	22	25	2.00
5596277--5596301	3	8.3	3	100	0	50	32	0	36	32	1.58
5596302--5596331	15	2.0	15	100	0	60	13	0	20	66	1.24
5596306--5596371	3	22.0	3	84	0	78	24	0	7	68	1.15
5601353--5601381	12	2.4	12	100	0	58	58	0	34	6	1.25
5609788--5609927	51	2.7	52	83	5	178	29	13	25	32	1.94
5609782--5609958	51	3.4	50	75	6	140	31	12	25	30	1.92
5610117--5610189	37	1.9	38	83	2	94	43	2	23	30	1.67
5619657--5619721	25	2.6	25	90	0	94	15	26	21	36	1.93
5621817--5621847	15	2.1	15	100	0	62	45	12	6	35	1.68
5622407--5622455	20	2.7	18	77	22	57	51	4	2	42	1.32
5624434--5624460	12	2.2	12	100	0	54	85	0	14	0	0.61
5626509--5626553	19	2.3	19	81	11	56	73	0	20	6	1.05
5633704--5634021	171	1.9	171	89	1	503	28	18	14	38	1.89
5634307--5634335	15	1.9	15	100	0	58	20	20	20	37	1.94
5638672--5638751	39	2.1	39	92	4	135	32	18	16	32	1.93
5638804--5638920	62	1.9	59	87	5	171	50	4	3	41	1.38
5638899--5639005	20	5.8	18	69	18	60	52	3	1	42	1.30
5638891--5638994	37	3.0	37	68	20	89	51	4	2	40	1.38
5647718--5647761	19	2.4	18	82	14	54	43	0	6	50	1.29
5650865--5650917	22	2.4	23	81	9	65	39	0	3	56	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5653456--5653490	17	2.0	18	88	5	54	31	5	2	60	1.35
5675089--5675377	44	6.3	44	71	12	145	33	19	21	25	1.97
5675098--5675425	142	2.3	142	89	0	512	33	19	20	26	1.97
5675330--5675647	44	6.8	44	67	20	153	33	15	20	30	1.94
5675284--5675647	98	3.8	95	89	5	508	33	16	20	29	1.95
5675480--5675647	88	1.9	88	91	2	275	33	16	20	29	1.94
5675142--5675618	240	2.0	239	82	5	588	33	17	20	28	1.95
5677221--5677279	25	2.2	28	82	17	72	23	6	6	62	1.44
5677336--5677370	17	2.0	18	88	5	54	31	5	2	60	1.35
5679560--5679602	22	1.9	22	85	4	59	39	9	20	30	1.84
5681302--5681344	18	2.4	18	81	14	61	46	4	9	39	1.57
5681812--5681937	28	4.5	28	94	1	200	26	13	27	31	1.94
5683652--5683735	43	2.0	43	95	0	150	28	14	28	28	1.95
5688038--5688073	18	1.9	19	88	5	56	41	0	5	52	1.24
5690572--5690627	22	2.6	22	85	2	69	12	30	28	28	1.93
5694105--5694149	22	2.0	22	83	16	56	15	35	20	28	1.93
5694933--5694963	11	2.8	11	90	0	53	6	22	6	64	1.40
5697698--5697751	25	2.2	25	86	0	72	29	22	18	29	1.97
5699980--5700022	16	2.7	16	78	10	52	13	0	20	65	1.27
5704466--5704504	18	2.1	19	90	4	62	53	5	5	35	1.45
5707091--5707390	45	6.7	44	76	11	170	43	18	18	19	1.89
5707226--5707392	45	3.7	46	83	3	178	43	18	20	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5707557--5707673	41	2.9	41	81	0	126	18	17	26	36	1.94
5707605--5707683	41	1.9	41	92	5	133	16	17	30	35	1.92
5726409--5726496	44	2.0	44	90	0	140	36	19	21	22	1.95
5727037--5727099	22	3.0	21	83	6	65	55	1	0	42	1.09
5739200--5739263	25	2.5	25	77	7	58	23	10	3	62	1.42
5739390--5739431	20	2.2	19	86	4	57	54	0	2	42	1.13
5739374--5739434	24	2.5	24	75	15	63	54	0	1	44	1.10
5742269--5742305	4	9.2	4	93	0	65	51	27	0	21	1.48
5747646--5748598	126	7.6	126	96	0	1669	31	17	23	28	1.97
5751427--5751460	10	3.6	10	92	7	54	38	0	5	55	1.24
5751788--5751870	24	3.2	25	77	14	71	34	7	2	55	1.41
5755935--5756021	1	87.0	1	72	0	57	85	3	11	0	0.72
5755937--5756021	22	3.9	21	81	15	93	84	3	11	0	0.74
5755934--5756020	16	5.4	16	78	10	79	83	4	11	0	0.78
5756530--5756578	7	7.0	7	84	15	66	69	0	16	14	1.19
5756530--5756578	15	3.5	14	79	17	57	69	0	16	14	1.19
5756750--5756834	44	1.9	44	90	0	134	30	15	31	22	1.95
5758074--5758551	50	9.6	50	68	5	261	27	23	25	22	2.00
5758064--5758528	100	4.7	100	92	1	713	28	23	25	22	1.99
5760073--5760106	10	3.6	10	92	7	54	38	0	5	55	1.24
5760420--5760485	17	4.0	16	77	13	62	31	3	3	62	1.26
5760423--5760508	24	3.4	25	78	14	86	34	4	2	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5762893--5763470	21	27.0	21	85	3	726	25	0	29	44	1.58
5762893--5763470	43	13.5	42	86	3	726	25	0	29	44	1.58
5763438--5763491	27	2.0	27	92	0	90	22	0	37	40	1.54
5763738--5763786	21	2.3	21	86	6	64	6	24	36	32	1.80
5763754--5763800	21	2.2	21	85	7	60	6	21	36	36	1.79
5764731--5764756	7	3.7	7	100	0	52	57	15	0	26	1.38
5765897--5765996	51	2.0	51	86	4	139	45	3	26	26	1.68
5765956--5766032	11	6.9	11	73	19	54	42	1	31	24	1.63
5765956--5766032	22	3.5	21	77	19	77	42	1	31	24	1.63
5769021--5769175	26	6.0	26	75	6	134	23	13	25	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161