genome.fa.s22.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  85  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26823951--26823996	19	2.4	19	80	16	51	28	6	13	52	1.65
26824929--26825015	33	2.6	33	83	0	93	26	21	17	34	1.95
26829496--26829527	15	2.1	16	94	5	57	65	0	0	34	0.93
26829739--26830452	252	3.0	241	76	12	635	45	6	8	39	1.62
26830285--26830330	18	2.5	18	83	13	58	50	4	0	45	1.21
26830302--26830346	17	2.8	17	84	15	60	44	4	4	46	1.43
26830715--26830747	17	2.0	17	88	5	50	63	0	0	36	0.95
26832367--26832628	39	6.7	40	87	7	337	25	22	27	24	2.00
26836415--26836532	57	2.1	58	85	1	157	27	17	6	47	1.73
26838638--26838668	9	3.4	9	90	0	53	25	12	22	38	1.90
26838720--26838756	9	4.1	9	92	0	65	45	13	10	29	1.77
26838805--26838865	30	2.0	31	90	9	99	19	42	0	37	1.52
26841071--26841181	42	2.6	42	84	0	123	24	19	17	38	1.92
26841090--26841199	42	2.6	42	82	2	123	22	19	20	37	1.94
26850305--26850342	19	2.0	19	94	0	67	39	10	13	36	1.79
26857294--26857488	106	1.8	105	84	1	264	19	25	22	32	1.97
26857476--26857661	25	7.6	25	73	13	111	19	22	20	38	1.94
26857553--26857717	24	6.7	24	73	8	91	18	25	21	34	1.96
26857645--26857713	25	2.8	24	80	2	75	18	24	23	33	1.97
26857553--26857717	73	2.2	73	79	4	161	18	25	21	34	1.96
26857671--26857738	25	2.7	25	81	6	75	22	20	20	36	1.95
26860594--26860855	39	6.7	40	87	7	337	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26870440--26870578	70	2.0	70	94	0	242	30	13	12	42	1.82
26875059--26875102	3	14.7	3	100	0	88	68	0	31	0	0.90
26877693--26877725	2	16.5	2	93	0	57	54	45	0	0	0.99
26884201--26884313	25	4.6	25	84	2	111	33	19	23	23	1.97
26884440--26884490	20	2.4	22	81	15	63	50	13	1	33	1.53
26884449--26884490	22	2.0	20	86	13	59	52	9	2	35	1.47
26886717--26887144	27	15.9	27	83	6	446	41	21	15	20	1.89
26886717--26887144	54	8.0	54	83	6	494	41	21	15	20	1.89
26886717--26887144	188	2.3	186	87	4	626	41	21	15	20	1.89
26887509--26887597	28	3.2	28	95	1	153	21	21	24	32	1.98
26887534--26887625	28	2.9	33	82	7	86	21	21	26	30	1.99
26889855--26889890	18	1.9	19	88	5	56	33	0	11	55	1.35
26892276--26892325	24	2.1	24	100	0	100	38	24	0	38	1.56
26902668--26902783	45	2.6	45	80	5	128	21	13	27	37	1.91
26905137--26905178	21	2.0	21	86	9	59	50	7	0	42	1.30
26906224--26906410	50	3.9	47	83	4	239	25	20	33	20	1.97
26906228--26906410	97	1.9	99	88	3	280	26	20	32	20	1.97
26911939--26911977	19	2.1	19	100	0	78	51	17	5	25	1.66
26917861--26917941	37	2.2	37	90	0	126	24	35	16	23	1.94
26918123--26918175	26	2.0	27	92	3	90	30	24	20	24	1.99
26920196--26920244	24	2.1	23	84	3	62	53	10	2	34	1.47
26924470--26924518	24	2.1	24	84	3	64	46	8	4	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26924830--26924878	22	2.2	22	100	0	98	30	8	16	44	1.76
26936459--26936491	17	1.9	17	93	0	57	21	12	9	57	1.62
26947573--26947651	9	8.7	9	73	15	56	25	3	2	68	1.19
26947862--26947932	3	23.7	3	75	5	63	23	7	2	66	1.30
26947863--26947934	25	3.0	25	83	4	94	23	6	2	66	1.29
26947854--26947949	48	2.0	46	82	7	113	20	7	4	67	1.32
26949336--26949392	27	2.3	25	82	14	73	12	7	5	75	1.17
26953560--26953598	15	2.4	17	83	8	55	71	0	15	12	1.14
26957629--26957671	7	6.0	7	81	5	50	48	39	0	11	1.40
26968194--26968233	20	2.0	21	85	5	55	67	2	2	27	1.16
26974363--26974555	50	3.8	50	83	0	224	22	28	22	26	1.99
26977904--26978292	192	2.0	192	98	0	762	34	24	11	29	1.91
26978947--26978988	21	2.0	21	86	9	59	28	21	11	38	1.89
26981701--26982511	405	2.0	405	100	0	1622	28	19	19	33	1.96
26982422--26982614	50	3.8	50	80	0	233	23	30	20	24	1.99
26982952--26983020	30	2.4	28	78	7	84	34	17	10	37	1.83
26984228--26984277	26	1.9	26	91	0	82	34	22	22	22	1.97
26984479--26984631	26	5.9	26	83	0	171	25	17	20	36	1.94
26989900--26989939	20	2.0	21	85	5	55	30	12	25	32	1.92
26994413--26994462	26	1.9	26	88	8	75	34	20	0	46	1.51
26998297--26998489	27	7.2	27	84	4	241	18	17	21	43	1.89
26998299--26998489	80	2.4	81	90	1	305	18	17	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26998301--26998489	53	3.5	54	84	5	258	18	16	21	43	1.88
27004767--27004801	15	2.4	15	90	4	54	48	0	8	42	1.33
27007677--27007711	17	2.1	16	94	5	61	80	5	2	11	1.00
27008827--27008880	28	2.0	28	89	7	85	64	0	25	9	1.23
27014850--27014915	5	12.4	5	83	13	71	19	1	0	78	0.82
27014850--27014919	18	4.2	17	82	14	92	20	1	0	78	0.83
27014855--27014929	31	2.4	32	90	2	116	21	2	0	76	0.92
27014986--27015024	17	2.3	17	100	0	78	56	10	28	5	1.54
27016326--27016569	50	4.9	50	82	5	244	28	20	28	22	1.99
27016281--27016520	100	2.3	103	82	5	272	28	20	28	23	1.99
27020705--27020853	56	2.7	55	90	6	228	25	20	27	26	1.99
27020705--27020938	56	4.4	49	83	6	189	26	21	27	24	1.99
27021110--27021308	56	3.7	56	84	6	241	25	20	29	24	1.99
27021110--27021343	56	4.4	53	84	5	237	26	21	27	24	1.99
27020537--27021748	405	3.0	405	98	0	2343	30	16	23	29	1.96
27021515--27021813	56	5.7	53	80	8	262	26	20	27	25	1.99
27024880--27024914	15	2.4	15	90	4	54	48	0	8	42	1.33
27034363--27034388	11	2.4	11	100	0	52	61	0	0	38	0.96
27047750--27047816	22	3.0	22	76	8	73	40	17	25	16	1.90
27055037--27055235	27	7.4	27	79	0	191	42	20	20	16	1.89
27056438--27056516	27	2.9	27	90	3	115	40	22	16	20	1.91
27060176--27060217	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27064435--27064632	27	7.4	27	75	7	154	38	19	18	22	1.93
27064457--27064627	81	2.1	82	85	4	231	38	19	20	22	1.94
27064435--27064632	54	3.7	54	77	3	186	38	19	18	22	1.93
27066031--27066342	27	11.6	27	81	0	345	43	22	16	17	1.87
27070543--27070854	149	2.1	148	86	5	441	42	4	10	42	1.58
27071751--27071839	27	3.3	27	96	0	160	35	11	10	42	1.74
27073678--27073715	17	2.2	17	90	0	58	31	7	15	44	1.75
27073678--27073728	17	3.0	18	81	16	56	29	9	17	43	1.81
27089850--27090146	50	5.8	50	80	4	222	28	20	26	24	1.99
27097953--27097997	22	2.0	22	100	0	90	35	26	22	15	1.94
27100976--27101123	80	1.9	80	82	0	188	29	12	23	33	1.92
27105757--27105862	50	2.1	50	82	3	124	27	22	32	17	1.97
27107729--27108077	173	2.0	173	100	0	698	31	20	22	24	1.98
27113754--27113804	21	2.4	21	83	9	59	62	9	3	23	1.42
27114093--27114122	12	2.5	12	94	0	51	40	0	43	16	1.48
27124688--27124808	61	2.0	61	98	0	233	31	13	20	34	1.91
27124688--27124777	30	3.0	29	63	15	74	28	15	22	33	1.95
27127070--27127117	24	2.0	24	83	0	60	47	10	6	35	1.63
27155727--27155765	20	1.9	21	94	5	71	33	2	0	64	1.08
27155727--27155771	20	2.1	21	88	8	65	35	2	0	62	1.08
27155975--27156017	22	2.0	22	86	4	61	51	0	13	34	1.42
27162846--27163390	27	20.2	27	80	5	449	43	18	18	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27163818--27163904	28	3.1	28	83	1	104	25	21	22	29	1.99
27170863--27171353	27	18.3	26	83	4	426	43	18	17	20	1.89
27170863--27171337	81	5.9	80	82	4	553	43	18	17	20	1.88
27175028--27175066	21	1.9	21	89	5	62	35	7	17	38	1.79
27175212--27175299	20	4.4	21	73	21	80	31	10	13	44	1.77
27177057--27177150	40	2.3	40	81	5	109	26	17	26	29	1.97
27177060--27177415	84	4.3	84	89	2	506	22	17	25	35	1.95
27177114--27177415	167	1.8	167	92	1	516	21	16	25	36	1.94
27177128--27177459	41	7.8	44	76	15	247	21	16	26	35	1.94
27182998--27183035	19	2.0	20	94	5	69	36	5	0	57	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161