genome.fa.s22.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  56  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17433017--17433075	29	2.0	29	86	0	82	35	27	10	27	1.89
17441802--17441841	19	2.1	19	95	0	71	25	22	45	7	1.78
17447313--17447498	51	3.7	49	81	3	219	25	16	26	31	1.97
17447316--17447507	101	1.9	101	87	5	280	26	17	26	30	1.97
17447322--17447507	102	1.8	101	87	5	259	26	16	26	30	1.97
17455219--17455354	54	2.6	54	77	2	141	34	13	22	29	1.92
17461683--17461743	12	5.6	11	79	11	56	73	0	4	21	1.01
17461722--17461746	6	4.2	6	100	0	50	80	0	0	20	0.72
17463910--17464152	50	4.8	50	76	3	200	25	25	20	27	1.99
17473747--17473795	18	2.7	18	90	0	71	67	4	14	14	1.37
17473765--17473795	6	5.2	6	92	0	53	70	0	12	16	1.16
17476743--17476779	13	2.7	14	83	8	58	24	16	29	29	1.96
17484153--17484182	6	5.0	6	91	0	51	16	0	13	70	1.18
17485962--17486015	13	4.2	13	69	21	51	38	14	14	31	1.87
17488424--17488472	23	2.1	23	92	0	80	42	16	20	20	1.89
17494808--17494881	36	2.1	36	100	0	148	29	18	27	24	1.98
17499865--17499908	22	2.0	22	100	0	88	36	4	18	40	1.71
17504896--17505350	49	9.4	49	93	3	796	30	28	8	32	1.86
17504896--17505350	194	2.3	194	94	3	794	30	28	8	32	1.86
17507738--17507787	25	2.0	25	92	0	82	38	10	18	34	1.84
17509648--17509716	17	4.2	17	72	20	51	39	1	2	56	1.23
17509663--17509750	20	4.8	19	70	17	62	43	2	2	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17509642--17509750	37	3.0	38	78	17	108	42	1	2	53	1.26
17518454--17518481	9	3.1	9	100	0	56	57	10	0	32	1.33
17518424--17518565	68	2.1	66	94	2	248	45	9	4	40	1.58
17518554--17518595	16	2.6	16	92	0	66	42	7	2	47	1.43
17518569--17518622	23	2.4	23	84	3	65	42	1	1	53	1.22
17518424--17518587	68	2.5	66	86	10	216	45	9	4	40	1.55
17518637--17518668	5	6.2	5	92	7	55	0	40	56	3	1.15
17530296--17530480	51	3.6	51	79	3	205	25	16	26	31	1.97
17530404--17530484	26	3.2	26	62	28	64	23	14	28	33	1.94
17533574--17533602	14	2.1	14	100	0	58	13	0	27	58	1.36
17536351--17536398	24	2.0	24	88	8	71	29	2	22	45	1.64
17543333--17543459	65	2.0	63	93	3	218	35	22	11	30	1.90
17544730--17544816	45	1.9	45	86	4	122	35	20	16	27	1.94
17544816--17544959	50	2.9	50	83	3	182	29	26	18	25	1.98
17555251--17555290	20	2.0	20	90	0	62	27	10	12	50	1.72
17555236--17555302	34	1.9	35	90	3	109	31	8	13	46	1.74
17555230--17555306	14	5.0	15	71	20	52	33	9	14	42	1.77
17555884--17555919	18	2.1	18	89	5	56	8	16	16	58	1.61
17557733--17557778	23	1.9	25	86	8	69	69	0	15	15	1.19
17557899--17557956	22	2.8	20	72	10	62	39	22	3	34	1.71
17558186--17558244	31	1.9	31	89	0	91	50	10	18	20	1.75
17559189--17559239	26	2.0	26	84	0	66	50	0	1	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17572344--17572391	18	2.5	19	86	13	71	64	4	0	31	1.12
17572342--17572395	18	2.7	19	83	16	65	64	3	0	31	1.11
17572454--17572507	16	3.3	17	76	7	58	77	0	1	20	0.86
17573847--17574467	44	14.3	43	70	15	279	27	22	21	28	1.99
17573850--17574478	216	2.9	217	91	1	1019	26	22	21	28	1.99
17586260--17586346	41	2.1	42	80	6	97	64	2	8	25	1.33
17586447--17586494	18	2.5	19	83	13	62	64	2	0	33	1.05
17586577--17586617	21	2.0	21	90	0	64	80	0	4	14	0.87
17590972--17590998	8	3.4	8	100	0	54	37	11	25	25	1.89
17591505--17591550	3	15.3	3	100	0	92	32	32	0	34	1.58
17599864--17600722	114	7.5	114	90	2	1278	25	20	26	27	1.99
17600725--17600787	21	3.2	21	73	15	71	28	3	4	63	1.30
17600738--17600780	16	2.5	17	88	7	61	27	2	2	67	1.15
17600730--17600805	38	2.0	40	86	5	111	28	3	2	64	1.25
17600735--17600797	13	4.9	13	75	11	58	30	3	3	63	1.25
17600754--17600802	22	2.2	22	82	7	55	30	4	2	63	1.24
17601153--17601185	14	2.3	15	94	5	59	30	0	33	36	1.58
17601212--17601241	13	2.2	14	94	5	53	26	0	40	33	1.57
17605879--17606053	43	4.1	43	81	1	208	26	18	26	27	1.98
17605895--17606062	85	2.0	85	86	0	237	28	17	25	27	1.98
17606232--17606395	43	3.8	43	85	1	222	23	18	31	26	1.97
17605737--17606406	335	2.0	336	92	0	1110	34	12	18	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17606232--17606395	85	1.9	85	88	0	247	23	18	31	26	1.97
17608007--17608037	3	10.3	3	100	0	62	67	0	0	32	0.91
17608036--17608070	3	11.7	3	100	0	70	34	0	0	65	0.93
17614023--17614073	23	2.2	23	89	0	75	43	21	7	27	1.80
17614528--17614559	12	2.6	13	85	14	50	31	0	6	62	1.20
17616493--17616610	54	2.2	54	93	1	202	31	14	17	36	1.90
17622301--17622440	45	3.0	45	71	12	131	24	18	18	38	1.93
17622219--17622772	94	5.9	94	79	3	497	26	20	18	35	1.95
17622470--17622706	44	5.1	44	63	20	115	24	21	19	35	1.96
17622215--17622772	188	3.0	187	84	2	636	26	20	18	35	1.95
17632206--17632262	29	2.0	29	96	0	105	31	12	24	31	1.92
17650922--17650959	15	2.5	16	83	12	53	26	10	0	63	1.27
17656979--17657021	14	2.9	15	86	10	54	39	4	13	41	1.66
17658449--17658514	32	2.1	32	88	0	96	56	13	3	27	1.52
17659959--17660001	21	2.0	21	86	8	61	44	11	6	37	1.68
17671155--17671201	19	2.4	20	85	3	60	48	12	8	29	1.71
17674883--17674920	17	2.4	17	86	8	53	26	2	2	68	1.16
17676539--17676596	25	2.2	25	85	11	73	60	6	3	29	1.39
17678380--17678499	51	2.4	49	83	9	143	45	7	19	27	1.77
17686495--17686525	16	1.9	16	100	0	62	29	25	6	38	1.81
17686668--17686719	24	2.2	24	92	0	86	34	1	7	55	1.39
17687299--17687648	124	2.8	124	95	0	610	28	15	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17690253--17690348	49	2.0	49	85	0	129	12	41	23	21	1.87
17691138--17691162	7	3.6	7	100	0	50	60	12	0	28	1.32
17692393--17692448	22	2.5	22	91	2	85	37	0	30	32	1.58
17692306--17692421	51	2.3	51	93	0	196	45	0	25	29	1.54
17692818--17692923	52	2.0	52	98	0	203	32	4	16	46	1.68
17694698--17694754	25	2.3	25	84	6	71	38	1	1	57	1.19
17694740--17694803	30	2.2	29	82	2	74	51	1	0	46	1.10
17694737--17694806	29	2.4	30	82	2	88	50	1	0	48	1.09
17697800--17697876	27	2.9	27	80	3	84	40	14	22	23	1.90
17697826--17697883	27	2.1	27	87	0	80	36	13	24	25	1.92
17701126--17701205	25	3.2	25	82	5	92	35	21	27	16	1.94
17701162--17701304	24	5.8	24	69	13	101	31	20	27	19	1.97
17703057--17703085	15	1.9	15	100	0	58	20	13	34	31	1.92
17703538--17703610	33	2.2	33	97	2	137	38	12	12	36	1.81
17706827--17707007	90	2.0	93	83	11	232	19	15	4	60	1.51
17718536--17718566	15	2.1	15	93	0	53	29	0	6	64	1.18
17724047--17724079	17	1.9	17	93	0	57	57	15	12	15	1.65
17730754--17730778	9	2.8	9	100	0	50	68	0	0	32	0.90
17733591--17733777	93	2.0	93	94	0	329	31	19	18	29	1.96
17746431--17746464	17	2.0	17	88	11	52	26	5	26	41	1.78
17754781--17754975	98	2.0	98	91	0	318	38	24	10	26	1.87
17757003--17757809	44	18.5	44	71	13	331	27	23	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17756986--17757765	217	3.6	217	88	4	1067	27	23	19	29	1.98
17756987--17757809	89	9.4	86	70	13	400	27	23	19	29	1.98
17768534--17768728	98	2.0	98	92	0	327	36	24	11	27	1.90
17768819--17768856	20	1.9	20	84	10	51	39	7	10	42	1.69
17772841--17772909	23	2.9	24	78	2	77	27	8	15	47	1.75
17775530--17775591	18	3.3	19	79	16	67	35	1	0	62	1.05
17775530--17775591	19	3.3	18	76	12	63	35	1	0	62	1.05
17776287--17776332	23	2.0	22	87	4	65	65	2	4	28	1.23
17780341--17780374	18	1.9	17	88	5	50	35	2	11	50	1.54
17786377--17786416	16	2.7	14	88	7	53	42	5	0	52	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161