genome.fa.s22.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  15  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5039469--5039539	25	3.0	23	78	9	81	57	5	5	30	1.45
5040746--5040804	30	2.0	30	86	6	84	42	27	8	22	1.82
5040910--5041911	72	13.2	77	79	8	682	33	18	17	31	1.94
5041007--5041312	170	1.8	167	87	3	452	30	20	19	30	1.97
5040786--5041827	222	4.5	241	79	10	773	33	18	17	31	1.94
5041171--5041911	72	10.0	72	86	5	847	32	18	17	32	1.94
5041171--5041911	222	3.3	218	85	5	943	32	18	17	32	1.94
5049710--5049760	25	2.1	24	85	10	68	56	1	0	41	1.10
5050804--5050847	3	13.3	3	82	17	52	29	38	0	31	1.58
5050803--5050844	7	6.1	7	88	5	68	28	40	0	30	1.57
5059039--5059136	30	3.3	30	88	0	160	18	5	48	27	1.68
5059908--5060282	123	3.0	123	98	0	716	35	13	13	37	1.84
5081463--5081535	15	4.9	15	84	0	92	15	16	13	54	1.71
5089975--5090293	48	6.6	48	83	1	361	27	28	17	26	1.98
5089978--5090293	95	3.3	96	83	1	357	27	27	17	26	1.98
5089975--5090293	143	2.2	145	84	1	408	27	28	17	26	1.98
5095777--5095817	15	2.7	15	88	0	64	58	9	17	14	1.62
5098766--5099119	47	7.6	47	76	16	369	29	29	18	23	1.98
5098813--5099164	46	7.6	46	76	16	377	29	28	18	23	1.98
5098758--5099169	93	4.4	93	99	0	797	28	28	18	23	1.98
5098760--5099184	46	9.1	47	69	16	280	29	28	18	23	1.98
5100169--5100597	214	2.0	214	95	0	777	30	16	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5100579--5100901	104	3.1	104	86	0	448	33	16	21	28	1.95
5103069--5103130	30	2.1	30	96	0	115	33	6	29	30	1.83
5111802--5112033	48	4.8	48	78	4	234	24	27	18	29	1.98
5120532--5120681	67	2.2	67	81	8	171	32	17	28	21	1.96
5120556--5120739	67	2.8	64	76	8	185	30	17	29	22	1.96
5123061--5123120	30	2.0	30	86	0	84	28	23	8	40	1.83
5127049--5127097	23	2.1	23	92	0	80	51	26	0	22	1.49
5133347--5133579	48	4.8	47	75	7	209	25	28	17	28	1.97
5139527--5139560	16	2.2	15	89	5	50	55	0	0	44	0.99
5142452--5142483	16	2.0	16	100	0	64	25	31	31	12	1.92
5152668--5152723	27	2.1	27	86	0	76	26	23	10	39	1.87
5166714--5166861	48	3.1	47	87	1	197	38	8	24	29	1.84
5169021--5169184	40	4.1	40	89	3	224	21	22	28	26	1.99
5177645--5177690	19	2.4	19	96	0	83	2	23	43	30	1.66
5186091--5186353	40	6.6	39	86	4	278	26	27	20	25	1.99
5186285--5186362	40	1.9	41	82	10	97	26	28	20	24	1.99
5187612--5187671	30	2.0	30	100	0	120	30	13	33	23	1.93
5189560--5189668	32	3.4	32	75	6	105	36	21	22	20	1.95
5189837--5189966	24	5.4	23	79	8	95	44	23	6	25	1.78
5192814--5193080	27	9.9	27	92	2	421	41	16	18	22	1.89
5193435--5193528	28	3.4	27	86	2	125	24	23	23	28	1.99
5206420--5206484	33	2.0	33	84	6	87	23	26	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5206448--5206508	28	2.2	28	88	2	88	26	24	27	21	1.99
5206845--5206909	27	2.4	27	89	5	96	21	20	18	40	1.92
5206843--5206933	27	3.3	27	83	4	85	24	18	16	40	1.90
5208076--5212875	619	7.8	619	94	0	7659	31	22	17	28	1.97
5212875--5215899	618	4.9	618	88	1	4208	32	22	17	27	1.96
5216208--5219943	618	6.1	618	85	2	4946	32	22	17	26	1.97
5219821--5220090	134	2.0	134	97	0	513	30	18	20	30	1.96
5220162--5229926	617	15.7	617	82	7	11005	33	22	17	27	1.96
5222122--5222169	25	1.9	25	91	0	78	35	16	25	22	1.95
5223099--5223246	73	2.0	73	98	0	287	39	18	18	23	1.92
5222486--5223864	690	2.0	689	93	0	2357	33	21	18	27	1.96
5229561--5230294	375	2.0	375	86	3	1021	29	22	18	29	1.97
5231127--5239703	618	14.0	617	92	1	13974	33	21	17	27	1.96
5238108--5239685	615	2.6	613	91	1	2545	32	21	17	28	1.97
5239339--5240083	375	2.0	372	87	3	1068	27	23	19	29	1.98
5239712--5241334	570	2.9	561	81	7	1702	31	22	18	27	1.97
5240764--5243053	618	3.7	618	89	2	3279	32	22	17	27	1.96
5242689--5243428	375	2.0	373	87	2	1072	28	22	19	29	1.98
5243604--5244735	570	2.0	562	85	4	1506	32	22	17	28	1.96
5245051--5246749	614	2.8	613	90	2	2611	33	22	17	27	1.96
5246397--5247126	375	2.0	373	88	2	1079	28	22	18	30	1.97
5247312--5248444	570	2.0	563	83	4	1451	31	22	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5247874--5253216	616	8.7	618	87	2	7021	32	23	17	27	1.96
5254007--5255087	540	2.0	540	89	1	1668	33	20	18	27	1.96
5255554--5256741	619	1.9	619	93	0	2029	32	23	17	26	1.96
5257064--5270190	617	21.0	616	76	9	9771	32	22	17	27	1.96
5260904--5262008	569	1.9	568	90	1	1732	33	24	16	25	1.96
5270815--5270845	16	1.9	16	93	0	53	35	19	16	29	1.93
5272818--5272879	32	1.9	32	90	0	97	27	11	20	40	1.87
5274031--5275424	697	2.0	697	99	0	2743	20	28	20	29	1.98
5278251--5278538	75	3.8	75	86	2	391	33	27	17	21	1.96
5278261--5278538	150	1.8	152	90	1	452	34	27	16	21	1.95
5283849--5283894	20	2.2	21	88	7	76	47	17	2	32	1.60
5283849--5283895	11	4.5	11	82	12	64	46	17	2	34	1.59
5289027--5289064	20	1.9	20	94	0	67	42	5	0	52	1.24
5293420--5293553	50	2.6	51	83	3	164	23	18	26	31	1.98
5293562--5293647	45	1.9	45	90	4	138	29	12	23	34	1.92
5297749--5297806	22	2.6	22	81	7	64	41	17	5	36	1.72
5297785--5297859	19	3.8	19	89	6	123	36	17	10	36	1.84
5301118--5301303	51	3.7	50	77	7	166	25	16	26	31	1.96
5301317--5301404	45	2.0	45	86	4	124	27	15	22	34	1.95
5308309--5308572	102	2.6	102	89	1	395	32	29	19	18	1.96
5315616--5315771	33	4.6	34	70	24	114	34	28	19	16	1.94
5315521--5315774	102	2.5	103	91	0	420	32	30	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5319689--5319732	19	2.4	19	84	3	54	50	0	38	11	1.39
5329840--5329884	20	2.2	20	84	7	56	51	11	6	31	1.63
5334853--5335034	91	2.0	91	87	0	265	34	26	18	20	1.96
5342644--5342873	50	4.6	50	85	2	291	25	21	30	23	1.99
5344754--5345013	130	2.0	130	97	0	493	40	1	13	45	1.52
5351630--5351672	22	2.0	22	81	9	52	34	0	4	60	1.17
5356307--5356331	13	1.9	13	100	0	50	16	20	0	64	1.30
5358872--5358915	22	2.0	23	86	4	63	11	20	11	56	1.64
5362975--5363003	14	2.0	15	93	6	51	31	0	20	48	1.50
5382780--5382826	21	2.2	22	92	3	78	21	38	19	21	1.94
5388142--5388211	32	2.2	32	82	5	79	31	18	21	28	1.97
5388684--5389041	27	13.3	27	80	8	322	22	17	17	41	1.90
5388684--5389043	81	4.5	79	79	7	357	22	17	17	41	1.89
5391287--5391338	22	2.2	25	83	13	65	30	11	1	55	1.46
5393969--5394044	38	2.0	38	92	0	125	53	13	18	14	1.72
5403339--5403384	22	2.1	22	88	4	67	45	10	0	43	1.39
5404965--5405010	21	2.1	21	88	4	65	45	2	8	43	1.47
5405062--5405103	20	2.0	20	86	4	57	19	11	14	54	1.70
5410406--5410583	27	6.6	27	84	3	205	29	28	15	26	1.96
5410427--5410582	82	1.9	81	88	3	233	29	28	15	26	1.96
5419083--5419259	27	6.5	27	78	6	144	29	28	15	25	1.96
5426253--5426404	75	2.0	75	89	0	232	34	18	23	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5434234--5434285	20	2.8	18	78	21	63	51	3	1	42	1.31
5439418--5439721	40	7.7	40	90	4	431	25	21	27	25	1.99
5441852--5442028	30	6.0	30	70	12	107	40	14	24	20	1.89
5441972--5442027	29	1.9	29	96	0	103	42	16	26	14	1.86
5441823--5442104	120	2.4	119	85	3	370	38	14	25	21	1.91
5458357--5458397	19	2.2	19	100	0	82	14	0	19	65	1.26
5459756--5459786	12	2.6	12	100	0	62	74	6	0	19	1.03
5460617--5460759	41	3.5	41	84	0	187	35	16	23	25	1.94
5460767--5460915	42	3.6	41	78	7	147	21	16	26	36	1.94
5468031--5468166	41	3.3	40	83	6	166	34	17	23	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161