genome.fa.s22.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  123  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38928708--38928753	23	2.0	23	100	0	92	34	21	4	39	1.73
38929252--38929291	20	2.0	20	90	0	62	50	0	12	37	1.41
38930225--38930700	243	2.0	243	88	0	702	27	14	23	34	1.94
38930631--38930688	19	3.0	19	75	5	62	20	25	25	27	1.99
38935117--38935158	22	2.0	20	86	9	57	78	2	14	4	1.01
38936323--38936472	45	3.3	45	67	8	124	25	22	20	32	1.98
38936297--38936470	89	1.9	89	92	3	294	25	22	19	32	1.98
38971357--38971454	51	1.9	51	89	4	153	25	25	2	46	1.63
38973783--38974027	21	11.5	21	87	3	337	42	30	1	25	1.63
38973783--38974026	43	5.7	43	85	2	339	43	29	1	25	1.63
38973788--38974026	64	3.7	64	88	2	354	42	30	1	25	1.63
38974008--38974074	27	2.5	27	97	0	125	41	22	2	32	1.69
38974277--38974322	22	2.1	21	88	4	65	50	36	0	13	1.41
38976959--38977040	43	1.9	43	85	9	114	23	20	25	30	1.99
38985488--38985531	18	2.5	18	92	3	72	50	0	2	47	1.13
38986242--38986295	23	2.3	23	81	6	65	44	7	0	48	1.31
38986389--38986441	19	2.8	20	85	5	65	54	0	3	41	1.18
38993834--38993887	19	2.8	20	73	18	51	64	0	0	35	0.94
38994844--38995100	22	11.0	23	65	21	117	40	15	10	32	1.82
38994844--38995097	47	5.4	45	85	4	292	40	15	10	32	1.82
38994844--38995100	94	2.7	94	90	2	383	40	15	10	32	1.82
38994840--38995100	141	1.9	140	85	3	362	40	16	10	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38994941--38995062	23	5.2	23	67	21	74	40	17	10	31	1.84
38995336--38995384	15	3.2	15	85	8	55	48	20	0	30	1.50
38996035--38996156	43	2.8	43	83	11	160	31	27	19	21	1.97
38996798--38996828	12	2.6	12	89	0	53	54	3	0	41	1.16
38999601--38999713	32	3.5	32	80	9	131	33	11	10	44	1.75
39000194--39000247	21	2.6	21	100	0	108	70	0	9	20	1.14
39000487--39000512	7	3.7	7	100	0	52	0	26	11	61	1.30
39006987--39007042	7	8.0	7	100	0	112	14	0	0	85	0.59
39009347--39009422	31	2.5	30	86	2	107	43	5	1	50	1.33
39016369--39016425	20	2.9	19	82	7	62	49	15	7	28	1.71
39018345--39018391	19	2.5	19	86	10	62	57	8	10	23	1.60
39022082--39022138	15	3.5	15	71	17	51	45	0	1	52	1.11
39023899--39023974	40	2.0	39	82	10	95	67	1	11	19	1.29
39024606--39024694	28	3.2	27	69	15	74	34	1	4	59	1.25
39024606--39024712	55	1.9	54	81	11	126	35	0	3	59	1.21
39029927--39029980	22	2.5	22	78	6	65	46	3	1	48	1.30
39030093--39030123	3	10.3	3	100	0	62	67	0	32	0	0.91
39033498--39033524	9	3.0	9	100	0	54	33	0	0	66	0.92
39043740--39043846	52	2.1	52	92	0	178	36	15	22	25	1.94
39071718--39071746	14	2.0	15	93	6	51	13	17	0	68	1.20
39085186--39085213	6	4.7	6	100	0	56	32	0	0	67	0.91
39095675--39095744	29	2.3	31	80	7	81	42	4	1	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39096369--39096434	31	2.1	31	88	0	96	31	18	25	24	1.97
39096450--39096483	10	3.5	10	92	4	52	73	0	0	26	0.83
39100530--39100607	20	4.1	19	78	6	77	56	0	2	41	1.13
39101063--39101133	20	3.6	19	72	24	58	54	1	2	40	1.23
39101408--39101454	19	2.5	19	75	3	51	57	6	4	31	1.43
39101508--39101536	14	2.0	15	93	6	51	37	0	0	62	0.96
39101767--39101808	18	2.3	19	91	4	68	30	2	2	64	1.19
39101863--39101941	40	2.0	40	80	14	92	46	5	1	46	1.32
39107935--39108063	37	3.5	37	83	5	154	27	16	17	37	1.91
39111946--39112053	21	5.1	21	87	0	153	16	25	17	40	1.90
39111948--39112070	42	3.0	42	80	2	151	17	23	17	41	1.90
39118171--39118224	19	2.8	19	71	23	51	27	1	3	66	1.19
39118517--39118582	30	2.2	31	83	2	89	46	7	10	34	1.67
39121143--39121175	8	4.1	8	100	0	66	24	24	0	51	1.48
39123136--39123179	23	1.9	23	81	9	54	34	0	6	59	1.24
39136580--39136623	22	2.0	22	100	0	88	31	13	4	50	1.62
39145927--39145953	4	6.8	4	100	0	54	74	0	0	25	0.83
39150546--39150583	8	4.8	8	100	0	76	73	0	0	26	0.83
39152523--39152714	67	2.8	68	82	6	212	33	19	7	39	1.80
39155913--39156068	84	1.9	84	85	8	219	30	28	18	21	1.97
39155913--39156069	43	3.7	42	77	16	180	30	28	19	21	1.97
39159101--39159142	20	2.0	21	86	4	59	47	7	2	42	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39163014--39163076	19	3.2	20	86	11	85	42	6	4	46	1.50
39163219--39163395	71	2.5	72	81	8	195	35	16	4	42	1.69
39163377--39163417	22	1.9	22	95	5	75	43	7	2	46	1.44
39165158--39165204	25	1.9	24	83	12	60	61	0	6	31	1.21
39165297--39165359	31	2.0	31	84	6	83	53	1	6	38	1.36
39166803--39166833	13	2.4	13	100	0	62	0	0	41	58	0.98
39170330--39170359	11	2.6	11	94	5	51	60	0	3	36	1.14
39170353--39170377	8	3.1	8	100	0	50	88	0	0	12	0.53
39178410--39178459	21	2.4	21	82	0	64	24	24	22	30	1.99
39178410--39178466	21	2.7	20	81	5	60	28	21	22	28	1.99
39183478--39183670	50	3.9	50	85	2	230	27	19	28	23	1.98
39192052--39192109	25	2.3	25	75	3	62	58	6	3	31	1.41
39192318--39192347	15	2.0	15	93	0	51	73	0	10	16	1.09
39192622--39192798	90	2.0	90	100	0	354	51	14	11	22	1.73
39196444--39196497	28	1.9	28	88	0	81	29	24	24	22	1.99
39196613--39196665	26	2.0	26	88	0	79	32	20	28	18	1.97
39196659--39196723	22	3.0	21	76	13	60	43	16	20	20	1.89
39196715--39196949	32	7.4	32	79	5	219	38	21	20	20	1.94
39196735--39196952	64	3.4	63	80	11	255	37	22	20	19	1.94
39196715--39196952	96	2.5	94	82	8	284	38	21	20	19	1.94
39197121--39197169	23	2.1	24	88	3	73	46	20	8	24	1.77
39197219--39197493	27	10.2	27	85	0	325	23	21	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39197200--39197493	81	3.7	81	83	1	360	23	22	21	33	1.97
39204423--39204456	17	2.1	17	88	5	52	82	0	11	5	0.83
39204876--39204913	20	1.9	20	100	0	76	47	0	5	47	1.24
39207737--39207833	27	3.6	27	91	2	149	27	14	28	28	1.95
39224922--39224996	26	2.9	25	82	5	87	37	14	14	33	1.87
39227460--39227539	27	2.9	27	84	1	106	45	13	21	20	1.85
39231186--39231218	16	2.1	16	88	11	50	36	6	18	39	1.75
39238058--39238111	27	2.0	26	82	10	65	50	11	0	38	1.38
39238769--39239890	4	281.0	4	95	2	1954	23	0	26	50	1.50
39239886--39239929	20	2.2	20	100	0	88	20	4	11	63	1.44
39243686--39243831	73	2.0	73	95	0	265	33	25	11	29	1.91
39244159--39244200	18	2.2	20	83	8	52	73	14	7	4	1.21
39244481--39244510	15	2.0	15	93	0	51	63	3	26	6	1.35
39249434--39249463	15	2.0	15	93	0	51	63	0	26	10	1.26
39250998--39251038	21	1.9	22	90	5	66	36	0	0	63	0.95
39251914--39251939	9	2.9	9	100	0	52	0	42	0	57	0.98
39261262--39261304	18	2.4	18	80	3	52	30	18	4	46	1.69
39264561--39264657	38	2.6	36	83	6	115	49	8	5	37	1.55
39267376--39267442	20	3.0	22	77	18	68	58	4	0	37	1.19
39267560--39267771	104	2.0	104	99	0	415	54	5	8	31	1.52
39274249--39274294	20	2.3	20	88	0	65	54	4	0	41	1.20
39274257--39274310	20	2.8	20	88	5	76	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39274257--39274311	19	2.8	19	83	8	67	56	1	0	41	1.10
39274289--39274327	20	2.0	19	85	5	51	56	5	0	38	1.22
39278445--39278490	24	1.9	24	100	0	92	30	13	21	34	1.91
39291583--39291688	52	2.0	52	100	0	212	33	23	11	31	1.90
39293056--39293109	11	5.0	10	82	10	63	22	27	1	48	1.61
39293057--39293112	22	2.5	23	86	11	73	23	26	1	48	1.61
39293117--39293174	29	2.2	26	81	12	64	34	1	3	60	1.24
39294270--39294302	7	4.7	7	96	0	57	27	3	15	54	1.55
39294955--39294992	18	2.1	18	90	0	58	21	26	10	42	1.85
39295204--39295267	21	3.0	21	79	0	65	34	39	18	7	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161