genome.fa.s22.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  113  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35896243--35896279	13	3.1	12	92	7	58	24	8	2	64	1.34
35909660--35909695	5	7.2	5	96	0	54	75	0	5	19	1.00
35909660--35909710	15	3.4	16	79	15	56	72	1	5	19	1.15
35910889--35910992	51	2.0	51	100	0	208	15	8	17	58	1.61
35911046--35911087	5	8.4	5	79	10	50	19	2	2	76	1.01
35911039--35911091	21	2.5	22	75	12	56	16	5	1	75	1.08
35914694--35914736	10	4.4	9	82	11	50	18	2	2	76	1.00
35914695--35914736	14	2.9	15	82	7	50	16	2	2	78	0.96
35927284--35927352	35	2.0	35	100	0	138	1	34	0	63	1.03
35940887--35940925	18	2.2	17	86	13	53	33	0	20	46	1.51
35941151--35941248	23	4.3	23	90	2	162	20	21	26	31	1.98
35941153--35941241	45	2.0	45	95	0	160	19	22	26	31	1.97
35947847--35947890	18	2.4	18	81	7	54	47	0	25	27	1.52
35948237--35948277	18	2.4	17	88	12	57	36	0	17	46	1.48
35948501--35948553	23	2.3	23	93	0	97	20	20	26	32	1.98
35953740--35953812	38	1.9	38	86	2	103	38	19	17	24	1.93
35953730--35953819	38	2.4	38	79	1	101	43	18	16	21	1.88
35958309--35958406	51	1.9	51	87	4	144	18	19	31	30	1.96
35960558--35960626	11	6.1	11	77	12	59	27	0	2	69	1.02
35962291--35962415	64	2.0	64	80	0	142	20	21	24	34	1.97
35968471--35968532	20	3.3	19	70	25	60	48	4	4	41	1.46
35968953--35969048	20	4.9	19	71	9	52	39	2	15	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35971676--35972143	132	3.5	132	90	0	722	27	23	18	29	1.98
35982756--35982789	16	2.1	16	88	0	50	44	20	14	20	1.87
35993391--35993465	35	2.2	32	83	6	87	64	1	1	33	1.11
35993913--35993969	28	2.0	28	82	0	69	43	1	8	45	1.45
35995977--35996016	22	1.9	22	90	10	66	35	0	2	62	1.09
35997846--35997881	18	2.0	18	100	0	72	38	11	11	38	1.76
35997936--35997961	6	4.3	6	100	0	52	15	0	0	84	0.62
36000877--36001309	217	2.0	217	100	0	866	30	27	17	25	1.97
36002944--36002999	28	1.9	28	82	13	69	53	3	8	33	1.49
36004216--36004450	79	3.0	79	83	9	263	34	7	12	45	1.70
36005121--36005179	29	2.0	29	100	0	118	38	20	6	33	1.79
36005918--36005969	6	8.7	6	97	0	68	15	7	0	76	0.99
36005918--36005969	18	2.9	18	91	0	77	15	7	0	76	0.99
36010349--36010397	3	16.3	3	95	0	89	30	0	2	67	1.02
36014515--36014556	18	2.3	18	95	0	75	21	26	45	7	1.77
36023673--36024240	127	4.5	124	87	1	744	29	16	22	30	1.96
36023673--36024240	251	2.3	250	86	3	759	29	16	22	30	1.96
36027468--36027649	95	1.9	95	100	0	364	32	17	24	25	1.96
36027836--36027958	21	5.8	21	80	1	147	27	1	25	45	1.63
36027836--36027962	43	3.0	42	86	2	173	26	1	25	45	1.62
36027839--36027957	64	1.9	63	87	1	175	28	1	25	44	1.64
36027930--36027983	27	2.0	27	88	0	81	22	1	35	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36027942--36027990	14	3.6	14	71	17	50	22	0	34	42	1.54
36029383--36029421	20	2.0	20	85	10	53	58	2	2	35	1.25
36030389--36030499	11	10.4	11	68	15	72	43	1	30	24	1.65
36030365--36030464	51	2.0	51	86	4	139	44	2	28	26	1.65
36030424--36030500	22	3.5	22	78	19	88	44	1	29	24	1.62
36030424--36030499	33	2.3	35	81	9	95	43	1	30	25	1.63
36032025--36032073	16	3.1	16	84	0	71	40	4	32	22	1.73
36037455--36037497	18	2.4	18	88	7	61	53	0	0	46	1.00
36046390--36046417	3	9.3	3	100	0	56	32	0	0	67	0.91
36052220--36052258	7	5.1	8	87	6	55	74	2	0	23	0.94
36052221--36052254	15	2.4	14	90	5	50	76	2	0	20	0.92
36071658--36071697	20	2.0	20	100	0	80	30	20	15	35	1.93
36081450--36081489	14	2.9	14	84	0	53	32	7	17	42	1.77
36081473--36081512	20	2.0	20	90	0	62	27	10	12	50	1.72
36081458--36081524	34	1.9	35	90	3	109	31	8	13	46	1.74
36084326--36084376	18	2.8	18	75	0	66	39	5	43	11	1.66
36092733--36092759	5	5.4	5	100	0	54	81	18	0	0	0.69
36094145--36094191	24	2.0	24	91	0	76	48	2	19	29	1.60
36096520--36096553	17	1.9	17	88	5	50	35	20	0	44	1.52
36104291--36104362	34	2.1	34	81	0	81	33	18	16	31	1.93
36107856--36107914	24	2.5	23	83	10	75	49	5	8	37	1.55
36107912--36108014	47	2.2	45	83	6	118	54	4	6	33	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36108957--36108998	18	2.3	18	100	0	84	0	11	11	76	1.03
36109578--36109675	50	2.0	49	81	2	115	24	20	20	34	1.96
36109938--36110092	44	3.5	44	80	5	136	30	23	18	27	1.97
36111471--36111566	50	1.9	50	89	6	151	13	19	19	46	1.83
36112370--36112450	15	5.3	15	77	14	76	11	2	11	75	1.14
36112360--36112447	22	3.9	21	75	20	72	11	3	10	75	1.17
36112361--36112450	31	2.9	30	82	11	96	11	3	10	75	1.15
36114373--36114411	21	1.9	20	84	5	51	20	28	7	43	1.79
36117973--36118002	14	2.1	14	93	0	51	20	16	43	20	1.88
36118585--36118619	14	2.6	14	95	4	63	65	0	0	34	0.93
36121646--36121776	42	3.1	42	75	6	120	17	20	17	44	1.87
36122353--36122400	20	2.4	20	100	0	96	41	4	16	37	1.68
36123281--36123343	28	2.2	28	88	8	92	46	19	12	22	1.83
36126665--36126696	15	2.1	15	94	0	55	68	9	6	15	1.36
36127046--36127078	17	1.9	17	100	0	66	6	33	30	30	1.82
36129653--36129764	29	3.9	28	79	11	111	25	22	12	40	1.89
36135529--36135596	34	2.0	34	94	0	118	30	19	1	48	1.58
36140560--36140599	20	2.0	20	90	0	62	32	22	12	32	1.91
36141076--36141171	48	2.0	48	95	0	174	31	14	25	29	1.95
36148479--36149138	44	15.0	45	72	10	312	30	16	24	28	1.97
36148479--36148885	89	4.6	90	75	4	353	28	17	25	28	1.97
36148479--36148817	134	2.5	133	87	1	473	27	17	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36148939--36149133	45	4.3	47	75	16	160	33	13	24	28	1.93
36148955--36149096	49	3.0	47	78	9	157	37	14	21	26	1.92
36148939--36149138	93	2.2	93	86	7	277	34	13	24	27	1.93
36155028--36155074	23	2.0	23	83	0	58	25	10	14	48	1.76
36159461--36159508	19	2.4	21	79	6	55	41	8	2	47	1.45
36166263--36166327	10	6.6	10	81	15	82	84	6	9	0	0.77
36166263--36166327	29	2.2	30	91	8	107	84	6	9	0	0.77
36166262--36166328	19	3.4	19	79	20	75	85	5	8	0	0.75
36166827--36166890	20	3.1	22	82	17	68	70	0	14	15	1.17
36166830--36166890	6	9.0	7	80	20	76	72	0	13	14	1.13
36166830--36166890	14	4.6	12	88	11	68	72	0	13	14	1.13
36167433--36167484	26	2.0	26	96	0	95	46	17	7	28	1.75
36168169--36168396	44	5.2	45	64	10	137	30	19	25	24	1.98
36168168--36168482	88	3.6	88	87	0	434	29	20	26	24	1.99
36168798--36168909	40	2.6	44	79	6	133	29	18	23	28	1.98
36169728--36169762	11	3.3	11	88	4	54	5	14	0	80	0.89
36173899--36174098	41	4.9	41	90	1	310	19	20	32	28	1.97
36174418--36174518	43	2.3	43	81	6	107	22	0	32	43	1.60
36174405--36174535	14	9.2	14	69	9	68	22	0	30	46	1.57
36174722--36174763	17	2.5	17	88	7	59	54	0	2	42	1.13
36174871--36174907	7	4.9	8	90	6	51	13	0	48	37	1.43
36178709--36178733	11	2.3	11	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36196228--36196267	16	2.4	16	87	4	53	65	0	20	15	1.28
36196403--36196439	5	7.4	5	93	0	65	78	0	2	18	0.87
36197211--36197719	254	2.0	254	96	0	948	33	13	11	41	1.80
36200507--36200539	17	1.9	17	100	0	66	21	18	42	18	1.89
36213621--36213698	23	3.4	23	92	0	129	47	39	2	10	1.51
36215965--36216029	32	2.0	32	85	5	87	40	3	12	44	1.57
36217641--36217727	40	2.2	40	89	4	131	19	12	22	44	1.84
36217667--36217751	40	2.1	40	89	4	127	21	9	24	44	1.81
36224974--36225046	30	2.4	30	81	0	83	27	23	9	39	1.85
36225025--36225307	91	3.2	90	84	2	365	22	25	13	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161