genome.fa.s22.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  128  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40263968--40264011	14	3.4	14	70	23	51	29	11	22	36	1.89
40263968--40264015	24	2.0	24	100	0	96	33	12	20	33	1.90
40267815--40267856	20	2.2	19	91	4	66	33	7	0	59	1.25
40271573--40271656	44	1.9	44	92	0	141	26	16	25	32	1.96
40275201--40275252	26	1.9	28	84	7	72	50	5	1	42	1.37
40275516--40275581	18	3.7	17	77	20	64	33	0	1	65	1.02
40275542--40275587	16	2.7	17	86	10	67	30	2	0	67	1.03
40275527--40275581	16	3.2	16	82	12	65	32	0	0	67	0.91
40275542--40275588	8	5.6	8	78	16	51	29	2	0	68	1.02
40277266--40277300	18	2.0	17	94	5	61	45	22	0	31	1.53
40278566--40278774	80	2.6	80	82	10	214	23	16	20	39	1.91
40278566--40278774	27	7.8	26	80	11	167	23	16	20	39	1.91
40278581--40278774	54	3.6	53	82	6	187	23	15	20	39	1.91
40278634--40278784	81	1.9	80	87	1	221	23	17	20	39	1.92
40282996--40283079	37	2.3	37	82	0	105	28	23	23	23	2.00
40289565--40289637	4	17.8	4	76	20	64	23	2	0	73	0.95
40289565--40289632	12	5.6	12	81	13	77	23	2	0	73	0.97
40289566--40289639	25	3.0	25	90	9	109	24	2	0	72	0.97
40291318--40291342	13	1.9	13	100	0	50	32	0	12	56	1.36
40300132--40300226	46	2.1	46	97	0	181	41	22	2	34	1.66
40303554--40303643	34	2.7	34	87	1	128	32	34	15	17	1.92
40303555--40303655	34	3.0	33	85	4	114	33	33	14	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40313479--40313542	32	2.0	31	81	3	74	21	18	31	26	1.96
40322721--40322752	14	2.1	16	88	11	50	46	0	25	28	1.53
40324534--40324559	12	2.2	12	100	0	52	26	42	15	15	1.87
40330262--40330540	30	9.4	29	74	7	134	22	24	13	39	1.90
40330322--40330483	60	2.7	60	78	6	168	19	25	14	40	1.89
40330292--40330541	90	2.8	88	81	3	288	21	25	14	39	1.90
40330292--40330483	30	6.4	30	76	4	147	20	25	14	39	1.90
40330471--40330540	29	2.4	30	80	7	90	24	27	10	38	1.87
40333594--40333637	23	1.9	23	90	9	72	38	0	2	59	1.10
40341402--40341434	17	2.0	17	88	5	50	18	3	27	51	1.60
40344929--40345010	42	2.0	42	100	0	164	31	20	24	23	1.98
40354996--40355070	38	2.0	38	97	0	141	34	18	2	44	1.64
40355551--40355594	23	2.0	22	86	4	61	54	2	9	34	1.44
40356327--40356381	21	2.7	21	88	5	87	36	12	10	40	1.79
40357015--40357397	44	8.7	45	69	12	179	26	25	18	30	1.98
40357060--40357441	175	2.2	175	89	3	590	26	25	18	29	1.98
40357366--40357661	44	6.7	44	89	2	443	30	26	17	26	1.97
40358975--40359018	21	2.2	19	88	8	61	0	0	20	79	0.73
40364175--40364217	23	1.9	22	90	4	68	55	2	6	34	1.39
40364615--40364672	22	2.6	22	81	7	64	41	17	5	36	1.72
40377082--40377137	28	2.0	28	96	0	103	46	0	16	37	1.47
40378894--40378941	21	2.2	21	96	3	87	25	4	37	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40391303--40391519	82	2.6	82	99	0	425	47	4	13	34	1.64
40392954--40394007	132	8.0	131	89	2	1499	30	23	17	28	1.97
40392954--40394206	264	4.8	263	87	3	1753	30	23	17	28	1.97
40392954--40394206	396	3.2	393	89	4	1825	30	23	17	28	1.97
40393896--40394113	112	1.9	112	96	0	400	30	25	15	29	1.95
40393764--40394206	244	1.8	244	89	3	696	31	23	16	28	1.96
40395613--40395662	7	6.6	8	80	15	54	12	14	0	74	1.09
40395613--40395662	15	3.3	15	83	13	59	12	14	0	74	1.09
40395614--40395656	21	2.0	21	95	0	77	11	16	0	72	1.13
40396518--40396566	13	3.8	12	84	12	62	10	4	0	85	0.71
40396520--40396605	27	3.1	27	80	12	88	10	6	4	77	1.10
40396549--40396614	27	2.5	26	85	4	96	9	7	7	75	1.18
40402596--40402646	24	2.1	24	92	0	84	23	19	3	52	1.62
40403192--40403251	14	4.5	13	78	14	52	66	1	5	26	1.21
40403190--40403251	19	3.4	18	80	6	72	66	1	4	27	1.21
40403190--40403251	22	2.8	22	80	9	65	66	1	4	27	1.21
40403985--40404039	24	2.2	26	78	18	64	40	0	16	43	1.48
40404472--40404520	22	2.3	20	80	16	55	46	2	22	28	1.63
40409250--40409294	24	1.9	24	86	4	65	4	22	15	57	1.56
40417579--40418339	378	2.0	378	99	0	1504	33	12	21	33	1.90
40419082--40419148	21	3.2	20	77	8	62	31	19	46	2	1.65
40419095--40419152	21	2.8	21	89	0	80	29	18	48	3	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40419369--40419402	14	2.4	14	100	0	68	11	8	23	55	1.63
40419467--40419556	43	2.1	43	87	0	126	42	16	14	26	1.87
40420865--40420920	17	3.2	17	80	14	53	57	3	35	3	1.34
40424821--40424882	30	2.1	30	96	0	115	24	3	14	58	1.51
40424965--40425004	18	2.1	18	86	9	53	25	0	10	65	1.24
40427733--40427974	133	1.8	132	83	7	319	42	14	13	29	1.83
40427744--40428012	133	2.0	132	80	8	296	42	14	13	29	1.84
40432218--40432323	53	2.0	53	96	0	194	41	6	8	43	1.61
40439825--40439877	7	7.3	7	80	16	63	54	1	0	43	1.11
40447236--40447301	30	2.2	29	81	10	89	51	6	10	31	1.61
40453914--40453959	20	2.4	19	82	7	56	50	6	4	39	1.48
40458528--40458608	31	2.6	31	94	0	144	24	25	6	43	1.77
40461711--40461749	21	1.9	20	84	5	51	43	17	0	38	1.50
40466065--40466096	15	2.0	17	88	11	50	37	6	6	50	1.53
40466407--40466469	30	2.1	31	82	8	76	19	15	12	52	1.74
40467877--40467932	27	2.1	27	83	6	69	42	7	10	39	1.67
40470028--40470116	45	2.0	44	95	0	151	23	19	22	33	1.96
40471051--40471106	20	2.7	21	83	5	69	32	0	7	60	1.24
40471153--40471348	61	3.2	61	81	6	225	22	19	11	46	1.82
40471545--40471587	22	2.0	22	86	9	61	55	4	2	37	1.33
40471738--40471921	92	2.0	90	83	7	228	42	12	19	26	1.86
40471797--40471921	31	4.1	31	74	18	118	44	10	18	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40477633--40477735	52	2.0	52	96	0	188	17	21	20	40	1.91
40478484--40478537	23	2.3	23	83	0	63	24	29	18	27	1.98
40478384--40478764	191	2.0	191	96	0	699	22	23	22	30	1.99
40478675--40478728	23	2.3	23	87	0	72	22	29	20	27	1.98
40493519--40493604	36	2.4	36	86	3	102	47	18	11	22	1.80
40497254--40497291	18	2.1	18	90	0	58	18	18	15	47	1.83
40500108--40500187	31	2.5	31	88	11	119	38	16	7	37	1.77
40500997--40501111	9	12.0	9	68	17	54	62	4	0	33	1.15
40500995--40501128	49	2.7	49	84	7	166	61	3	0	35	1.14
40511988--40512034	23	2.1	22	84	4	58	21	2	0	76	0.89
40512191--40512257	27	2.5	26	78	7	73	14	4	4	76	1.11
40513233--40513266	16	2.2	16	89	5	52	82	2	14	0	0.79
40518279--40518390	38	2.9	38	97	0	215	28	19	8	43	1.79
40521458--40521506	24	2.0	24	100	0	98	44	18	0	36	1.50
40526179--40526235	17	3.5	16	72	9	53	33	1	12	52	1.49
40528247--40528286	19	2.2	19	86	4	55	40	0	30	30	1.57
40529574--40529774	43	4.5	43	75	11	154	31	29	16	21	1.96
40529574--40529741	92	1.8	91	83	7	223	30	29	18	21	1.97
40534390--40534435	23	2.0	23	83	8	58	19	0	6	73	1.04
40535115--40535139	7	3.6	7	100	0	50	44	56	0	0	0.99
40535130--40535291	82	2.0	82	90	2	254	45	27	1	25	1.61
40535133--40535316	82	2.2	82	82	3	228	46	26	1	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40535378--40535409	14	2.2	15	94	5	57	37	31	0	31	1.58
40535765--40536093	41	8.2	41	85	8	430	30	23	20	25	1.99
40535985--40536048	31	2.0	32	90	3	103	31	23	20	25	1.98
40535944--40536090	72	2.0	74	96	2	271	29	24	20	25	1.99
40536126--40536261	40	3.4	40	79	5	143	20	21	21	36	1.95
40538850--40539184	44	7.7	43	73	8	203	28	24	19	27	1.98
40538943--40539182	129	1.9	129	81	3	295	29	25	20	25	1.99
40539347--40539760	87	4.7	87	88	0	567	24	22	22	30	1.99
40539625--40539762	45	3.1	45	66	10	111	26	24	18	29	1.98
40541919--40541958	17	2.3	18	82	4	55	2	20	2	75	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161