genome.fa.s22.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  145  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45167882--45168106	50	4.5	50	75	4	229	29	20	25	24	1.99
45167932--45168112	100	1.8	100	91	0	299	28	19	26	25	1.99
45167918--45168140	50	4.5	49	71	6	144	29	19	26	24	1.99
45167928--45168140	100	2.1	100	83	5	286	29	19	25	24	1.99
45168265--45168362	44	2.2	46	82	8	123	31	13	25	29	1.93
45181380--45181450	35	2.1	35	84	7	92	35	15	9	39	1.81
45185902--45185958	28	1.9	29	83	16	73	3	35	1	59	1.25
45187626--45188211	150	3.9	149	88	3	851	32	18	26	22	1.97
45189686--45189759	24	3.4	24	66	24	72	40	10	2	45	1.53
45189672--45189784	41	2.8	41	97	2	210	44	9	2	43	1.51
45189668--45189801	41	3.2	41	91	3	198	42	8	2	47	1.46
45198296--45198492	41	4.8	41	92	5	317	27	22	20	28	1.99
45202958--45203019	26	2.4	27	84	10	76	33	1	1	62	1.14
45203439--45203478	2	20.0	2	100	0	80	50	0	50	0	1.00
45209354--45209397	20	2.2	19	88	8	61	68	0	22	9	1.18
45211733--45211757	6	4.2	6	100	0	50	16	16	0	68	1.22
45211733--45211913	51	3.3	56	83	9	239	30	19	6	44	1.75
45212656--45213415	397	1.9	396	81	5	926	34	17	12	35	1.88
45215762--45215994	42	5.5	43	75	10	178	35	25	16	22	1.94
45215768--45215995	85	2.7	85	87	2	316	35	26	15	22	1.94
45215973--45216022	25	2.0	25	96	0	91	26	28	24	22	1.99
45223985--45224378	126	3.1	125	85	2	522	30	16	15	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45224446--45224550	34	3.1	33	74	19	99	40	14	0	45	1.45
45224598--45224683	42	2.1	42	84	6	113	47	26	1	24	1.59
45225341--45225383	22	2.0	22	86	9	61	55	0	0	44	0.99
45225453--45225515	30	2.2	29	88	5	92	22	12	15	49	1.79
45236879--45236913	13	2.7	13	95	0	61	22	25	17	34	1.96
45251873--45251953	34	2.3	36	93	6	141	66	2	2	28	1.17
45251873--45251963	34	2.7	35	89	6	125	67	2	2	28	1.15
45252093--45252148	23	2.2	26	84	12	73	48	3	0	48	1.19
45252682--45253108	110	4.0	107	90	2	660	34	19	16	30	1.94
45252682--45253108	108	4.0	107	90	3	662	34	19	16	30	1.94
45252682--45253101	218	1.9	216	90	2	673	34	19	16	29	1.94
45254347--45254382	14	2.7	13	91	8	63	69	13	16	0	1.19
45255549--45255585	17	2.1	18	90	5	58	43	5	5	45	1.49
45257980--45258319	44	7.6	44	68	11	154	28	23	16	31	1.96
45268500--45268534	16	2.2	16	89	0	52	42	17	17	22	1.88
45269462--45269903	110	4.1	107	91	2	643	35	18	14	30	1.92
45269462--45269881	218	1.9	216	89	1	653	35	19	15	29	1.93
45302688--45302740	24	2.4	21	90	9	79	32	5	0	62	1.19
45308854--45308959	35	3.1	35	97	1	196	15	16	14	54	1.71
45309707--45309740	17	1.9	18	88	5	52	14	29	5	50	1.67
45312833--45312913	41	2.0	41	97	0	153	29	7	14	48	1.71
45314200--45314291	46	2.0	46	100	0	184	36	13	13	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45338452--45338480	3	10.0	3	92	7	51	31	0	0	68	0.89
45341336--45341363	4	7.0	4	100	0	56	50	0	0	50	1.00
45341392--45341438	24	1.9	25	91	4	78	48	2	8	40	1.45
45342528--45342557	8	3.9	8	95	4	53	63	0	0	36	0.95
45350118--45350159	17	2.4	18	77	18	52	35	4	0	59	1.19
45351992--45352024	17	1.9	17	100	0	66	48	3	0	48	1.17
45353960--45354409	228	2.0	228	89	0	695	34	22	15	27	1.94
45355801--45355876	37	2.1	37	97	0	143	32	27	11	27	1.92
45364086--45364128	22	2.0	22	90	4	70	11	23	34	30	1.90
45371591--45371628	15	2.5	15	87	12	51	78	0	21	0	0.74
45371595--45371628	8	4.2	8	88	11	52	79	0	20	0	0.73
45375744--45375889	53	2.8	53	88	0	202	26	23	12	37	1.90
45377463--45377541	41	1.9	41	86	0	113	22	37	25	13	1.91
45378098--45378151	11	4.7	12	78	19	53	81	0	12	5	0.85
45378107--45378171	28	2.5	27	87	9	91	78	1	13	6	1.01
45378107--45378170	13	4.9	13	75	21	62	78	1	14	6	1.02
45380547--45380605	27	2.3	26	79	5	66	44	1	3	50	1.28
45380925--45381071	78	1.9	77	84	2	186	42	14	8	33	1.77
45381281--45381349	9	7.4	9	76	11	59	65	1	4	28	1.21
45381251--45381340	38	2.4	36	76	16	85	61	1	3	34	1.20
45381280--45381349	28	2.5	26	78	13	68	64	1	4	30	1.21
45382238--45382267	5	6.0	5	96	0	51	0	20	36	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45384026--45384057	10	3.2	10	95	0	55	28	0	6	65	1.16
45384343--45384406	32	2.0	32	93	0	110	37	1	10	50	1.47
45389190--45389286	33	2.8	35	72	20	89	45	3	1	50	1.24
45390090--45390302	116	1.8	117	92	3	367	26	15	25	32	1.96
45392312--45392423	38	2.8	40	77	5	120	30	27	19	22	1.98
45393782--45393876	40	2.3	40	90	3	145	0	28	8	63	1.24
45393890--45393935	8	5.8	8	76	19	51	58	0	2	39	1.10
45394995--45395391	200	2.0	200	96	0	740	32	25	12	28	1.92
45396002--45396054	11	4.5	11	75	11	52	60	1	5	32	1.31
45396273--45396298	13	2.0	13	100	0	52	15	46	30	7	1.74
45400565--45400607	17	2.4	17	84	7	50	30	0	4	65	1.13
45406195--45406243	3	16.3	3	100	0	98	67	0	0	32	0.91
45411103--45411136	15	2.3	15	90	10	52	17	17	29	35	1.93
45417944--45418190	44	5.6	43	80	5	264	29	20	17	32	1.96
45417944--45418190	132	1.9	132	88	3	381	29	20	17	32	1.96
45418801--45418924	63	2.0	63	98	0	239	41	16	16	25	1.88
45430061--45430099	5	7.8	5	94	0	69	58	0	0	41	0.98
45432624--45432675	26	1.9	28	85	14	74	57	0	1	40	1.10
45438215--45438299	24	3.5	24	82	6	109	18	8	56	16	1.64
45442245--45442373	42	3.1	41	80	6	134	44	16	23	16	1.86
45442245--45442301	21	2.7	22	78	10	75	40	17	24	17	1.91
45446697--45446751	17	3.3	15	79	18	56	49	1	1	47	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45446734--45446776	13	3.3	13	78	12	52	55	0	2	41	1.12
45453439--45453471	15	2.3	15	90	10	52	21	3	0	75	0.93
45453448--45453481	17	2.0	17	88	0	50	26	5	0	67	1.13
45463408--45463448	21	2.0	21	90	4	66	46	0	0	53	1.00
45465572--45465694	28	4.4	28	92	2	185	33	27	12	26	1.92
45471547--45471808	46	5.8	46	92	3	433	33	14	22	29	1.94
45473171--45473212	22	1.9	23	90	9	70	52	4	23	19	1.65
45478193--45478263	24	2.8	25	78	20	76	64	1	4	29	1.20
45478278--45478345	36	1.9	35	82	5	84	63	1	2	32	1.18
45478470--45478510	16	2.7	16	77	11	50	60	0	2	36	1.10
45481942--45481977	15	2.4	15	90	0	54	19	2	0	77	0.88
45481951--45481977	5	5.4	5	100	0	54	18	0	0	81	0.69
45491577--45491634	16	3.2	18	77	20	59	24	29	0	46	1.53
45492251--45492276	5	5.2	5	100	0	52	19	19	19	42	1.90
45517041--45517189	3	49.7	3	100	0	298	32	0	0	67	0.91
45528346--45528379	3	11.3	3	87	0	50	61	2	2	32	1.26
45530366--45530421	22	2.5	22	94	2	94	28	32	1	37	1.68
45530508--45530841	116	2.9	116	97	0	623	39	9	8	42	1.69
45532607--45533130	42	12.5	42	84	7	593	27	23	20	29	1.99
45532620--45533105	83	5.8	84	87	7	621	27	23	20	28	1.99
45532607--45533105	125	3.9	127	86	6	633	27	23	20	29	1.99
45537297--45537649	126	2.8	126	87	2	530	33	22	14	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45541117--45541193	20	3.8	20	75	13	68	22	37	16	23	1.94
45543986--45544033	24	2.0	25	87	4	71	41	22	18	16	1.90
45546811--45546948	66	2.1	65	86	4	188	34	13	8	42	1.75
45549085--45549113	15	1.9	15	100	0	58	27	13	6	51	1.66
45549268--45549398	13	10.5	12	65	24	51	49	0	2	47	1.19
45549255--45549326	36	2.0	36	83	5	92	50	1	2	45	1.25
45549877--45549910	16	2.2	16	89	5	52	55	8	5	29	1.54
45554022--45555604	789	2.0	789	96	0	2887	27	22	14	35	1.93
45562082--45562122	13	3.2	13	80	13	57	65	0	0	34	0.93
45562089--45562118	14	2.1	15	93	6	53	73	0	0	26	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161