genome.fa.s22.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  147  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45849956--45849998	21	2.0	21	86	0	59	27	23	20	27	1.99
45849924--45850446	196	2.7	195	94	0	920	26	19	21	33	1.97
45851231--45851264	17	1.9	18	88	5	52	50	8	5	35	1.58
45852293--45852361	24	2.9	24	73	0	66	20	21	18	39	1.93
45852321--45852360	18	2.2	18	86	0	53	20	25	15	40	1.90
45852387--45852442	24	2.3	24	81	0	67	37	8	16	37	1.80
45854905--45854929	12	2.1	12	100	0	50	0	16	0	84	0.63
45855477--45855554	41	1.9	41	91	0	129	16	15	34	33	1.90
45855535--45855590	29	1.9	29	85	0	76	14	21	35	28	1.92
45859793--45859835	18	2.5	17	85	10	61	25	11	20	41	1.86
45874860--45874937	40	2.0	40	82	10	97	52	2	0	44	1.14
45879921--45880037	44	2.7	42	79	13	130	24	19	28	27	1.99
45879923--45880037	43	2.6	44	79	14	121	25	19	27	27	1.98
45881545--45881735	23	8.2	23	80	4	195	28	12	16	42	1.84
45881533--45881735	46	4.4	46	87	1	298	28	12	16	42	1.84
45881534--45881735	93	2.2	93	89	0	305	28	12	16	42	1.85
45882820--45882868	24	2.0	25	88	4	73	36	2	10	51	1.48
45887210--45887267	27	2.1	27	81	12	66	46	15	18	18	1.84
45892671--45892730	30	2.0	30	86	0	84	21	10	16	51	1.73
45893037--45893109	33	2.2	33	81	11	89	46	15	8	30	1.74
45898024--45898110	3	29.0	3	80	9	88	28	4	3	63	1.31
45899341--45899409	30	2.2	31	87	5	95	33	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45924653--45924738	42	2.0	42	100	0	172	53	9	2	34	1.46
45926586--45926627	18	2.5	18	88	11	63	26	0	4	69	1.08
45926848--45926907	32	1.9	31	82	3	75	28	8	23	40	1.83
45931370--45931452	5	15.8	5	71	9	58	34	18	2	44	1.63
45931381--45931437	22	2.6	22	82	0	78	35	17	1	45	1.59
45931370--45931452	15	5.6	15	72	13	73	34	18	2	44	1.63
45934985--45935037	27	2.0	27	81	7	63	24	9	1	64	1.34
45935173--45935253	9	9.4	9	71	22	50	29	1	2	66	1.12
45934865--45935311	244	1.8	248	82	9	581	31	9	7	51	1.61
45940429--45940500	17	4.1	16	82	13	81	16	2	6	73	1.17
45940428--45940471	21	2.2	20	88	12	63	15	0	4	79	0.89
45948760--45949326	125	4.5	124	86	3	744	29	16	23	30	1.96
45950497--45951280	22	36.0	22	86	5	1060	23	1	30	44	1.61
45951573--45951619	21	2.2	21	85	7	60	10	19	31	38	1.86
45952521--45952546	7	3.7	7	100	0	52	57	15	0	26	1.38
45952715--45952752	20	1.9	20	84	10	51	55	10	2	31	1.48
45953751--45953805	11	4.9	11	73	20	51	43	1	27	27	1.65
45953751--45953805	22	2.5	22	80	16	60	43	1	27	27	1.65
45967264--45967321	22	2.5	23	83	8	73	41	1	1	55	1.20
45981130--45981210	40	2.0	41	85	2	110	30	25	19	23	1.98
45988218--45989031	265	3.1	261	88	5	1147	29	14	12	43	1.83
45990326--45990369	19	2.4	19	85	7	56	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45993132--45993175	20	2.2	20	84	8	54	72	9	2	15	1.19
45995242--45995356	44	2.6	45	87	2	153	27	26	20	24	1.99
45995626--45996049	45	9.4	45	81	5	455	29	24	16	29	1.96
45995626--45996057	135	3.2	134	85	2	512	30	23	16	29	1.96
45999775--45999810	18	2.0	18	89	10	56	22	0	11	66	1.22
46013848--46013892	14	3.1	14	78	12	54	51	6	4	37	1.49
46015612--46015901	130	2.2	130	82	3	343	26	24	20	27	1.99
46015906--46016086	99	1.8	99	86	4	267	27	24	18	29	1.98
46021388--46021462	37	2.0	37	100	0	150	32	25	21	21	1.98
46022901--46022925	9	2.8	9	100	0	50	60	0	8	32	1.26
46024629--46024692	32	2.0	32	96	0	119	18	26	21	32	1.97
46030650--46030693	20	2.2	20	84	8	54	72	9	2	15	1.19
46031863--46031900	6	6.2	6	82	17	51	81	2	0	15	0.80
46032959--46033021	31	2.0	31	81	6	74	60	3	1	34	1.22
46035067--46035092	8	3.2	8	100	0	52	26	11	15	46	1.80
46038030--46038067	15	2.6	14	88	8	58	63	0	0	36	0.95
46042349--46042378	6	4.8	6	95	4	51	33	0	16	50	1.46
46043492--46043552	29	2.2	28	85	11	81	77	1	14	6	1.05
46044082--46044120	20	2.0	21	90	10	64	35	0	2	61	1.10
46046085--46046126	21	2.0	21	90	0	66	23	26	26	23	2.00
46047872--46047915	23	2.0	23	90	4	72	20	22	2	54	1.56
46050470--46050509	20	2.0	20	90	0	62	30	5	15	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46051872--46051932	32	1.9	32	93	0	104	47	18	4	29	1.69
46051872--46051945	32	2.5	30	85	10	91	48	18	4	28	1.66
46051905--46051958	27	2.0	27	85	7	74	51	18	3	25	1.62
46056959--46057197	30	8.0	30	78	7	211	29	14	17	38	1.89
46056968--46057197	60	3.8	60	77	6	250	29	14	18	37	1.91
46056970--46057197	90	2.5	90	79	2	233	29	14	17	37	1.91
46057987--46058027	19	2.1	20	90	4	66	48	2	2	46	1.28
46058538--46058685	71	2.1	70	92	2	244	52	6	12	29	1.63
46060981--46061056	22	3.5	21	71	8	62	28	10	21	39	1.86
46062957--46062987	15	2.1	15	100	0	62	48	6	6	38	1.55
46073934--46073965	15	2.1	15	94	0	55	34	18	3	43	1.66
46074371--46074407	16	2.2	17	90	4	58	27	0	2	70	1.01
46077573--46077950	126	3.0	126	86	0	533	38	15	17	28	1.90
46081474--46081516	18	2.4	18	92	0	68	41	9	27	20	1.83
46083237--46083303	32	2.1	32	83	10	84	40	1	20	37	1.62
46086050--46086081	16	2.0	16	100	0	64	43	18	12	25	1.85
46087911--46088049	70	2.0	70	98	0	269	32	13	17	36	1.89
46089876--46089931	20	2.8	20	76	15	53	73	3	8	14	1.21
46090550--46090606	22	2.6	22	85	0	69	47	10	19	22	1.80
46090853--46090882	16	1.9	16	93	6	53	43	13	13	30	1.82
46100073--46100133	22	2.9	22	88	9	83	49	18	4	27	1.68
46108391--46108814	213	2.0	213	99	0	839	33	18	12	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46122028--46122069	12	3.6	12	78	15	52	21	23	0	54	1.44
46126658--46126695	20	1.9	20	84	10	51	57	5	5	31	1.43
46126761--46126794	10	3.2	10	84	15	50	38	0	11	50	1.39
46126757--46126785	14	2.1	14	100	0	58	34	0	13	51	1.42
46126893--46126947	3	18.7	3	90	3	76	63	1	3	30	1.22
46147674--46147709	15	2.4	15	95	0	63	61	13	0	25	1.33
46155568--46155592	12	2.1	12	100	0	50	68	8	0	24	1.16
46155729--46155770	20	2.1	20	86	0	57	47	0	7	45	1.30
46167109--46167136	13	2.2	13	100	0	56	35	7	42	14	1.73
46168608--46168863	54	4.7	54	72	10	200	32	15	25	26	1.96
46168656--46168872	27	8.0	27	77	9	160	31	16	24	27	1.96
46168608--46168879	81	3.3	81	75	9	264	31	15	25	27	1.96
46169958--46170033	9	8.4	9	85	5	91	27	7	19	44	1.78
46169958--46170034	27	2.9	27	82	3	102	27	7	19	45	1.77
46170755--46170846	46	2.0	46	93	4	161	26	4	30	39	1.75
46170755--46170863	46	2.5	44	85	11	147	28	3	31	36	1.75
46171006--46171251	110	2.1	110	83	10	296	53	4	1	41	1.28
46171107--46171161	18	3.4	17	82	14	55	54	0	0	45	0.99
46171104--46171167	28	2.4	28	89	5	96	57	0	0	42	0.98
46173795--46173836	22	1.9	22	95	0	75	57	16	4	21	1.58
46174044--46174104	25	2.5	25	94	2	106	42	19	8	29	1.80
46175701--46175741	12	3.4	12	100	0	82	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46183081--46183118	20	2.0	20	84	5	51	2	21	0	76	0.91
46183715--46183820	44	2.4	44	76	6	108	33	22	17	26	1.96
46184004--46184269	87	3.1	86	90	0	397	24	22	22	31	1.99
46185936--46185995	26	2.3	26	86	11	79	6	10	11	71	1.30
46185947--46186007	32	1.9	31	90	3	95	6	6	13	73	1.22
46185947--46186007	26	2.4	26	81	8	63	6	6	13	73	1.22
46193715--46193776	31	2.0	31	96	0	115	16	30	16	37	1.90
46196498--46196535	20	2.0	20	84	5	51	2	21	0	76	0.91
46207208--46207259	23	2.2	25	86	6	72	51	5	1	40	1.37
46209745--46209787	22	2.0	22	90	0	68	34	6	25	32	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161