genome.fa.s22.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  110  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35013719--35013792	27	2.7	27	81	8	87	41	20	18	18	1.90
35013809--35013877	27	2.6	27	79	4	68	36	28	15	18	1.92
35013908--35013963	24	2.3	24	78	0	67	32	5	21	41	1.76
35014116--35014167	26	2.0	26	88	0	77	13	19	26	40	1.88
35014171--35014322	32	4.8	32	75	0	133	21	22	21	34	1.96
35014171--35014311	64	2.2	64	89	0	219	19	21	22	35	1.96
35014532--35014588	28	2.0	28	86	0	78	24	19	22	33	1.97
35015291--35015800	27	18.9	27	86	2	582	38	20	18	22	1.93
35015969--35016071	26	4.0	26	83	0	134	17	18	25	38	1.92
35015969--35016071	52	2.0	52	88	0	152	17	18	25	38	1.92
35016182--35016258	28	2.8	28	91	0	127	23	19	24	32	1.97
35016182--35016272	28	3.3	27	84	6	119	21	18	24	35	1.96
35016232--35016300	33	2.1	34	86	2	95	21	21	26	30	1.99
35017484--35017527	19	2.3	19	84	7	54	50	6	18	25	1.71
35020817--35020974	35	4.5	35	88	4	205	18	10	29	41	1.85
35020817--35020974	69	2.3	71	84	6	207	18	10	29	41	1.85
35021162--35021203	22	1.9	23	85	9	61	54	4	19	21	1.62
35024627--35024701	33	2.2	34	92	2	125	42	10	6	40	1.66
35033537--35033571	16	2.2	16	90	10	54	20	5	5	68	1.31
35035203--35036548	676	2.0	675	90	0	2143	31	15	21	30	1.95
35045245--35045287	19	2.3	18	84	4	50	51	0	39	9	1.34
35051243--35051270	14	2.0	14	100	0	56	21	28	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35060149--35060173	13	1.9	13	100	0	50	12	24	32	32	1.91
35060610--35060651	15	2.7	16	82	14	52	45	0	2	52	1.13
35060601--35060642	15	2.9	15	82	10	52	47	0	0	52	1.00
35060792--35060886	45	2.1	45	86	5	131	38	27	2	31	1.68
35060865--35060934	16	4.4	16	90	0	95	27	34	2	35	1.72
35065545--35065798	128	2.0	129	85	3	350	30	25	3	40	1.71
35071983--35072054	25	2.9	24	80	12	74	29	22	27	20	1.99
35072104--35072154	24	2.1	24	85	0	66	35	19	23	21	1.96
35081680--35081774	25	3.8	25	85	0	118	22	20	18	38	1.93
35081681--35081776	50	1.9	50	91	0	156	21	19	18	39	1.92
35081775--35081856	22	3.6	22	83	5	101	19	23	14	42	1.88
35083752--35083942	28	6.9	28	91	1	303	31	23	20	24	1.98
35083752--35083942	83	2.3	84	90	3	305	31	23	20	24	1.98
35083969--35084017	23	2.1	23	100	0	98	32	57	4	6	1.42
35084334--35084717	27	14.2	27	76	10	260	19	22	19	39	1.93
35084414--35084717	54	5.6	53	81	6	299	18	22	19	39	1.93
35084414--35084717	81	3.8	81	80	1	358	18	22	19	39	1.93
35089811--35089876	25	2.6	25	75	13	64	30	22	25	21	1.99
35089940--35089990	24	2.1	24	85	0	66	31	17	29	21	1.96
35103813--35104310	248	2.0	248	98	0	960	31	17	16	34	1.93
35106013--35106083	36	2.0	36	100	0	142	25	25	19	29	1.99
35106479--35106509	10	3.1	10	95	0	53	74	6	0	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35106479--35106515	15	2.6	14	87	8	56	72	5	0	21	1.04
35108588--35108671	29	2.8	30	75	7	91	36	25	17	20	1.94
35108730--35108881	61	2.5	61	82	3	164	35	26	16	21	1.94
35113704--35113768	32	2.0	32	96	0	121	16	20	18	44	1.87
35115275--35115310	18	2.0	18	88	0	54	25	25	8	41	1.83
35115688--35115802	62	1.9	60	83	3	149	34	5	9	50	1.57
35118842--35119224	125	3.1	125	85	3	502	28	17	15	38	1.90
35119431--35119471	14	2.8	15	86	13	59	51	31	0	17	1.46
35119431--35119471	15	2.8	15	89	10	59	51	31	0	17	1.46
35119868--35119901	18	1.9	18	88	5	52	64	2	5	26	1.30
35125231--35125271	9	4.2	10	82	14	50	51	0	12	36	1.40
35133389--35133464	35	2.2	35	90	0	116	40	26	17	15	1.89
35139202--35139282	21	4.0	21	82	3	85	17	22	17	43	1.88
35139849--35139879	13	2.4	13	94	0	53	41	3	19	35	1.67
35148117--35148153	9	4.1	9	92	0	65	45	13	10	29	1.77
35149148--35149179	15	2.1	15	94	0	55	37	9	6	46	1.61
35150591--35150626	16	2.2	16	95	0	63	36	5	33	25	1.79
35150606--35150745	45	3.1	45	90	3	212	31	5	27	35	1.80
35150904--35150938	18	2.0	17	88	5	52	54	0	0	45	0.99
35150919--35151109	61	3.2	61	70	11	194	50	5	1	42	1.34
35150880--35151122	120	2.0	120	94	0	423	49	4	1	44	1.31
35152563--35152614	25	2.1	25	85	7	70	42	13	25	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35173854--35173904	13	3.9	13	80	10	68	33	5	25	35	1.80
35176847--35176879	17	1.9	17	93	0	57	48	27	9	15	1.74
35177106--35177139	17	1.9	18	88	5	52	41	20	11	26	1.87
35179806--35179874	30	2.3	31	85	7	88	62	5	20	11	1.49
35197968--35198051	42	2.0	42	95	0	150	47	11	8	32	1.70
35198082--35198121	19	2.2	18	86	4	53	40	12	2	45	1.56
35200121--35200319	104	1.9	104	96	0	371	30	12	17	39	1.87
35210012--35210150	34	4.1	34	77	3	145	45	12	12	30	1.78
35209961--35210160	68	2.9	68	81	4	206	44	12	12	31	1.79
35214013--35214063	21	2.4	22	90	6	79	31	5	37	25	1.80
35214368--35214399	14	2.2	15	94	5	57	68	0	31	0	0.90
35215083--35215108	9	2.9	9	100	0	52	57	0	0	42	0.98
35218890--35219067	27	6.6	27	83	3	205	26	15	28	29	1.96
35218891--35219046	82	1.9	81	88	3	233	26	15	28	29	1.96
35218887--35219067	82	2.2	81	83	2	229	27	15	27	29	1.96
35226953--35227130	27	6.6	27	83	3	205	26	15	28	29	1.96
35226954--35227109	82	1.9	81	88	3	233	26	15	28	29	1.96
35226950--35227130	82	2.2	81	83	2	229	27	15	27	29	1.96
35232397--35232474	38	2.1	37	92	2	129	14	21	29	34	1.93
35235631--35235728	43	2.3	43	89	0	151	20	16	21	41	1.90
35235730--35235889	43	3.7	43	87	5	216	21	18	18	41	1.90
35237863--35237911	3	16.3	3	95	0	89	30	0	2	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35237935--35237959	6	4.2	6	100	0	50	16	0	0	84	0.63
35238295--35238328	9	3.8	9	88	11	52	32	2	0	64	1.08
35238331--35238383	12	4.3	12	78	2	52	20	3	7	67	1.31
35238515--35238942	109	3.9	108	85	4	549	30	15	17	35	1.92
35242027--35242069	9	4.7	9	85	5	59	86	6	0	6	0.72
35244087--35244708	88	7.1	87	92	1	958	27	22	26	24	1.99
35244717--35244831	45	2.6	45	80	5	117	26	20	26	26	1.99
35246205--35246253	3	16.3	3	95	0	89	30	0	2	67	1.02
35246524--35246623	39	2.6	39	96	3	184	42	3	2	53	1.28
35246710--35246762	12	4.3	12	78	2	52	20	3	7	67	1.31
35246894--35247321	109	3.9	108	84	4	538	30	15	18	35	1.92
35249425--35249467	20	2.2	20	82	0	50	30	23	11	34	1.90
35257462--35257538	14	5.0	15	71	20	52	42	15	9	32	1.78
35257478--35257517	20	2.0	20	90	0	62	50	12	10	27	1.72
35257466--35257532	34	1.9	35	90	3	109	46	13	8	31	1.74
35257501--35257540	14	2.9	14	84	0	53	42	17	7	32	1.77
35262150--35262218	13	5.3	13	82	0	84	28	15	23	31	1.95
35262149--35262218	26	2.7	26	81	0	95	30	15	22	31	1.95
35266423--35266552	47	2.8	47	87	0	188	24	24	16	33	1.96
35266485--35266684	92	2.2	91	80	9	210	26	24	18	31	1.97
35270478--35270615	66	2.1	65	91	2	233	46	10	13	29	1.77
35285357--35285600	119	2.1	119	96	0	452	31	10	25	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35286057--35286157	50	2.0	50	100	0	202	21	15	23	38	1.92
35294769--35294810	22	1.9	22	85	9	59	26	0	4	69	1.08
35294849--35294882	6	5.8	6	96	3	61	35	0	17	47	1.48
35294849--35294896	18	2.6	17	84	12	60	33	0	16	50	1.46
35297445--35297481	19	1.9	19	100	0	74	81	0	5	13	0.86
35297454--35297483	13	2.3	13	94	0	51	80	0	3	16	0.85
35298329--35298398	35	2.0	35	100	0	140	22	17	17	42	1.88
35301172--35301489	153	2.1	150	83	6	385	42	10	3	43	1.55
35305010--35305043	16	2.2	15	89	5	50	82	0	17	0	0.67
35305021--35305045	13	1.9	13	100	0	50	84	0	16	0	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161