genome.fa.s22.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr2
Parameters: 2 7 7 80 10 50 1000
Length:  50190067

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   

This is table  100  of  161  ( 19208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31657283--31657330	21	2.3	21	92	0	78	27	22	33	16	1.96
31658314--31658356	22	1.9	22	85	4	59	48	0	25	25	1.51
31658324--31658366	22	2.0	22	90	0	68	46	0	27	25	1.53
31662719--31662843	56	2.2	56	90	2	189	41	7	13	37	1.72
31662837--31662945	23	4.7	23	91	0	164	34	0	20	44	1.51
31662944--31663736	29	28.2	29	87	7	1160	28	0	26	44	1.57
31663375--31663425	22	2.3	22	100	0	102	25	0	29	45	1.54
31662844--31663736	391	2.3	394	87	8	1272	29	0	25	44	1.57
31663654--31663708	23	2.4	21	100	0	74	27	0	25	47	1.52
31663740--31663797	26	2.2	25	80	14	64	44	10	3	41	1.55
31665518--31665583	10	6.5	10	73	3	60	65	0	1	33	1.02
31665518--31665583	31	2.2	30	94	2	114	65	0	1	33	1.02
31665524--31665565	21	2.0	21	85	0	57	64	0	0	35	0.94
31665617--31665667	22	2.3	21	87	9	75	35	0	33	31	1.58
31665620--31665718	52	1.9	52	95	0	180	38	0	32	29	1.58
31665672--31665718	22	2.1	22	96	0	85	40	0	34	25	1.56
31665687--31665821	69	2.0	68	94	1	234	34	0	37	27	1.62
31672027--31672087	29	2.1	30	90	3	97	54	6	14	24	1.64
31678538--31678607	35	2.0	35	97	0	131	11	41	8	38	1.72
31679703--31679740	20	1.9	20	94	0	67	26	18	5	50	1.68
31690431--31690499	34	2.0	34	94	0	120	27	24	10	37	1.88
31692116--31692168	23	2.3	23	93	0	97	20	20	26	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31692298--31692370	38	1.9	37	86	8	103	45	1	21	31	1.61
31707792--31707839	13	3.7	13	88	0	69	31	25	6	37	1.81
31709385--31709513	45	2.9	43	78	10	125	20	13	27	39	1.89
31710868--31711377	255	2.0	255	98	0	993	37	5	22	34	1.78
31716218--31716248	14	2.1	15	94	5	55	64	0	6	29	1.18
31717011--31717227	40	5.4	40	80	0	211	23	27	15	34	1.94
31722503--31722542	6	6.7	6	88	0	62	32	0	20	47	1.50
31723928--31723988	3	20.0	3	86	3	77	72	0	26	1	0.94
31723926--31723976	25	2.0	25	100	0	102	68	0	27	3	1.07
31726185--31726221	20	1.9	19	89	10	58	75	2	8	13	1.13
31726373--31726400	3	9.3	3	100	0	56	67	0	0	32	0.91
31728070--31728612	44	12.5	44	69	14	164	28	24	20	27	1.99
31728026--31728649	217	2.9	217	92	0	998	27	24	20	27	1.99
31728249--31728978	401	1.8	401	94	0	1309	28	23	20	27	1.99
31728466--31728833	184	2.0	184	94	0	646	27	24	21	26	1.99
31728774--31728887	44	2.6	44	82	9	133	26	26	21	25	2.00
31741018--31741067	24	2.1	23	92	3	82	62	6	0	32	1.20
31752778--31752831	27	2.0	28	88	3	83	16	12	20	50	1.78
31760264--31760292	14	2.0	15	93	6	51	20	0	27	51	1.47
31764623--31764764	76	1.9	76	88	2	214	42	18	13	26	1.87
31766871--31766925	24	2.3	24	83	0	65	29	20	16	34	1.94
31766963--31766992	16	1.9	16	93	6	53	40	0	10	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31787635--31787659	10	2.5	10	100	0	50	0	20	0	80	0.72
31788801--31788972	56	3.1	56	72	15	192	38	1	6	52	1.39
31788773--31789002	113	2.0	113	97	0	435	38	2	6	52	1.41
31790444--31790792	26	13.8	26	71	11	208	32	6	3	57	1.41
31790439--31790637	51	3.9	49	77	13	165	31	6	3	59	1.37
31790711--31790785	24	3.0	24	80	5	78	37	5	1	56	1.31
31792151--31792240	27	3.4	27	79	11	105	30	7	2	60	1.37
31792151--31792382	26	9.1	25	74	13	145	30	6	3	59	1.42
31794857--31794910	25	2.2	25	86	0	72	16	24	16	42	1.88
31796010--31796039	12	2.6	11	94	5	51	3	16	0	80	0.85
31797253--31797302	24	2.1	24	84	0	64	30	20	16	34	1.94
31798281--31798330	23	2.1	24	88	3	75	28	8	8	56	1.57
31801307--31801389	22	3.8	22	72	3	69	32	7	18	42	1.77
31805305--31805412	31	3.6	31	72	18	111	25	18	11	44	1.83
31805305--31805469	59	2.8	60	83	7	192	27	16	11	44	1.83
31805334--31805469	60	2.3	60	85	5	177	27	16	12	43	1.84
31807403--31807439	18	2.1	18	94	0	65	62	8	10	18	1.52
31812750--31812857	56	1.9	55	83	7	137	28	14	11	45	1.79
31812942--31813056	27	4.3	27	90	0	149	20	26	27	25	1.99
31812944--31813073	27	4.8	27	85	3	138	21	26	27	24	1.99
31812926--31813073	54	2.7	54	78	4	154	21	25	27	26	1.99
31816559--31816622	33	1.9	33	83	0	83	29	12	43	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31816576--31816647	33	2.2	33	89	0	108	27	11	43	18	1.83
31820655--31820695	22	2.0	20	85	9	55	68	2	0	29	1.03
31820662--31820696	18	1.9	18	94	0	61	71	2	0	25	1.00
31820663--31820704	18	2.4	18	88	4	59	76	2	0	21	0.90
31821176--31821216	21	2.0	21	100	0	82	43	4	9	41	1.59
31821479--31821559	8	10.4	8	75	18	57	0	28	1	70	0.95
31821479--31821559	11	6.9	11	72	19	58	0	28	1	70	0.95
31821484--31821560	13	6.0	13	78	17	74	0	29	1	68	0.97
31821586--31821629	20	2.2	20	91	0	70	38	20	27	13	1.90
31823626--31823848	79	2.8	78	82	9	265	24	27	22	25	2.00
31823626--31823848	39	5.7	40	86	8	266	24	27	22	25	2.00
31831639--31831823	79	2.3	81	84	7	236	25	27	22	24	2.00
31831639--31831823	40	4.7	40	83	7	234	25	27	22	24	2.00
31833754--31833801	23	2.1	23	92	0	78	31	20	10	37	1.87
31849215--31849246	16	2.0	16	100	0	64	31	25	6	37	1.81
31849534--31849594	28	2.2	28	87	0	86	11	21	13	54	1.70
31859954--31860009	6	8.8	6	76	18	51	26	1	1	69	1.08
31859954--31860010	14	4.5	13	79	16	66	26	1	1	70	1.07
31862763--31862805	17	2.5	17	80	0	50	18	25	27	27	1.98
31862963--31863007	16	2.8	16	83	9	56	15	8	2	73	1.18
31866095--31866258	75	2.2	75	83	5	206	31	23	20	25	1.98
31866716--31866807	14	6.4	14	82	5	103	32	26	23	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31867336--31867399	27	2.2	29	81	8	69	4	18	3	73	1.14
31867365--31867423	18	3.2	19	75	18	52	3	23	1	71	1.11
31867442--31867485	22	2.0	21	86	4	61	25	29	11	34	1.91
31882666--31882888	79	2.8	78	83	7	272	24	27	22	25	2.00
31882666--31882888	39	5.7	40	87	6	280	24	27	22	25	2.00
31894747--31894809	28	2.3	28	86	2	83	31	23	20	23	1.98
31894976--31895040	26	2.5	26	84	0	94	35	23	20	21	1.96
31895185--31895381	27	7.4	26	73	16	104	19	18	19	43	1.89
31895186--31895372	53	3.5	54	75	10	179	18	18	20	42	1.90
31895186--31895353	27	6.3	26	75	9	126	19	18	19	42	1.89
31899697--31899738	21	2.0	20	82	13	50	35	21	2	40	1.66
31899735--31899780	19	2.5	19	82	10	60	34	4	2	58	1.30
31902344--31902511	76	2.2	76	84	0	219	30	23	19	26	1.98
31903341--31903876	290	1.8	290	95	0	984	29	14	18	37	1.91
31904108--31904247	70	2.0	70	92	2	237	36	22	11	29	1.89
31906901--31906939	16	2.5	16	87	4	53	35	7	2	53	1.43
31907480--31907520	20	2.1	19	86	4	55	14	12	0	73	1.11
31909541--31909594	21	2.6	21	87	0	81	27	7	35	29	1.84
31929241--31929273	15	2.3	15	89	5	50	54	18	0	27	1.44
31942186--31942210	13	1.9	13	100	0	50	32	16	12	40	1.84
31942691--31942754	13	4.9	13	83	7	85	37	25	6	31	1.81
31944619--31944701	9	9.2	9	86	0	103	31	3	34	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31944619--31944701	6	13.8	6	87	0	103	31	3	34	30	1.75
31945374--31945484	52	2.1	53	94	1	197	30	16	10	42	1.82
31958353--31958440	27	3.3	27	80	0	95	28	23	9	38	1.85
31961619--31961707	25	3.6	25	80	4	83	31	17	26	23	1.97
31969486--31969838	47	7.4	47	94	2	589	32	7	29	29	1.86
31969486--31969838	96	3.7	96	94	2	606	32	7	29	29	1.86
31977005--31977140	50	2.6	52	79	8	159	25	30	18	25	1.98
31983038--31983093	26	2.1	27	78	15	64	51	16	0	32	1.44
31984900--31985242	29	11.8	29	70	9	126	21	26	13	37	1.91
31984930--31985183	87	2.9	87	88	0	373	20	27	14	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161